Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2382

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2381 and Psest_2382 are separated by 270 nucleotidesPsest_2382 and Psest_2383 are separated by 34 nucleotides Psest_2381: Psest_2381 - hypothetical protein, at 2,533,067 to 2,534,272 _2381 Psest_2382: Psest_2382 - coenzyme PQQ biosynthesis probable peptidase PqqF, at 2,534,543 to 2,537,083 _2382 Psest_2383: Psest_2383 - Predicted transcriptional regulators, at 2,537,118 to 2,538,065 _2383 Position (kb) 2534 2535 2536 2537 2538Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2533.557 kb on + strand, within Psest_2381at 2533.611 kb on + strand, within Psest_2381at 2533.643 kb on - strand, within Psest_2381at 2533.645 kb on + strand, within Psest_2381at 2533.646 kb on - strand, within Psest_2381at 2533.646 kb on - strand, within Psest_2381at 2533.705 kb on - strand, within Psest_2381at 2533.705 kb on - strand, within Psest_2381at 2533.705 kb on - strand, within Psest_2381at 2533.911 kb on + strand, within Psest_2381at 2533.912 kb on - strand, within Psest_2381at 2533.922 kb on + strand, within Psest_2381at 2533.922 kb on + strand, within Psest_2381at 2533.922 kb on + strand, within Psest_2381at 2533.923 kb on - strand, within Psest_2381at 2533.923 kb on - strand, within Psest_2381at 2533.923 kb on - strand, within Psest_2381at 2533.923 kb on - strand, within Psest_2381at 2533.923 kb on - strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.119 kb on - strand, within Psest_2381at 2534.119 kb on - strand, within Psest_2381at 2534.119 kb on - strand, within Psest_2381at 2534.119 kb on - strand, within Psest_2381at 2534.119 kb on - strand, within Psest_2381at 2534.134 kb on - strand, within Psest_2381at 2534.169 kb on + strandat 2534.170 kb on - strandat 2534.170 kb on - strandat 2534.288 kb on - strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.345 kb on - strandat 2534.345 kb on - strandat 2534.345 kb on - strandat 2534.345 kb on - strandat 2534.345 kb on - strandat 2534.410 kb on - strandat 2534.410 kb on - strandat 2534.436 kb on + strandat 2534.436 kb on + strandat 2534.436 kb on + strandat 2534.437 kb on - strandat 2534.437 kb on - strandat 2534.437 kb on - strandat 2534.437 kb on - strandat 2534.437 kb on - strandat 2534.443 kb on + strandat 2534.444 kb on - strandat 2535.212 kb on + strand, within Psest_2382at 2535.213 kb on - strand, within Psest_2382at 2535.278 kb on - strand, within Psest_2382at 2535.278 kb on - strand, within Psest_2382at 2535.280 kb on + strand, within Psest_2382at 2535.280 kb on + strand, within Psest_2382at 2535.281 kb on - strand, within Psest_2382at 2535.281 kb on - strand, within Psest_2382at 2535.336 kb on - strand, within Psest_2382at 2535.341 kb on + strand, within Psest_2382at 2535.341 kb on + strand, within Psest_2382at 2535.341 kb on + strand, within Psest_2382at 2535.342 kb on - strand, within Psest_2382at 2535.342 kb on - strand, within Psest_2382at 2535.342 kb on - strand, within Psest_2382at 2535.622 kb on - strand, within Psest_2382at 2535.622 kb on - strand, within Psest_2382at 2535.622 kb on - strand, within Psest_2382at 2535.704 kb on + strand, within Psest_2382at 2535.833 kb on - strand, within Psest_2382at 2536.023 kb on + strand, within Psest_2382at 2536.023 kb on + strand, within Psest_2382at 2536.024 kb on - strand, within Psest_2382at 2536.024 kb on - strand, within Psest_2382at 2536.024 kb on - strand, within Psest_2382at 2536.024 kb on - strand, within Psest_2382at 2536.065 kb on + strand, within Psest_2382at 2536.223 kb on - strand, within Psest_2382at 2536.484 kb on + strand, within Psest_2382at 2536.506 kb on + strand, within Psest_2382at 2536.506 kb on + strand, within Psest_2382at 2536.506 kb on + strand, within Psest_2382at 2536.507 kb on - strand, within Psest_2382at 2536.507 kb on - strand, within Psest_2382at 2536.683 kb on - strand, within Psest_2382at 2536.683 kb on - strand, within Psest_2382at 2536.683 kb on - strand, within Psest_2382at 2536.738 kb on + strand, within Psest_2382at 2537.656 kb on + strand, within Psest_2383at 2537.656 kb on + strand, within Psest_2383at 2537.657 kb on - strand, within Psest_2383at 2537.657 kb on - strand, within Psest_2383at 2537.657 kb on - strand, within Psest_2383at 2537.657 kb on - strand, within Psest_2383at 2537.677 kb on + strand, within Psest_2383at 2537.677 kb on + strand, within Psest_2383at 2537.678 kb on - strand, within Psest_2383at 2537.678 kb on - strand, within Psest_2383at 2537.678 kb on - strand, within Psest_2383at 2537.678 kb on - strand, within Psest_2383at 2537.891 kb on - strand, within Psest_2383at 2537.912 kb on + strand, within Psest_2383at 2537.912 kb on + strand, within Psest_2383at 2538.006 kb on + strandat 2538.006 kb on + strandat 2538.006 kb on + strandat 2538.007 kb on - strandat 2538.007 kb on - strandat 2538.007 kb on - strandat 2538.007 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
remove
2,533,557 + Psest_2381 0.41 +1.1
2,533,611 + Psest_2381 0.45 +1.5
2,533,643 - Psest_2381 0.48 +1.2
2,533,645 + Psest_2381 0.48 +2.1
2,533,646 - Psest_2381 0.48 +1.2
2,533,646 - Psest_2381 0.48 +1.9
2,533,705 - Psest_2381 0.53 +3.1
2,533,705 - Psest_2381 0.53 +1.6
2,533,705 - Psest_2381 0.53 +1.4
2,533,911 + Psest_2381 0.70 +1.9
2,533,912 - Psest_2381 0.70 +3.1
2,533,922 + Psest_2381 0.71 +1.2
2,533,922 + Psest_2381 0.71 +2.1
2,533,922 + Psest_2381 0.71 +2.7
2,533,923 - Psest_2381 0.71 +1.0
2,533,923 - Psest_2381 0.71 +1.8
2,533,923 - Psest_2381 0.71 +2.8
2,533,923 - Psest_2381 0.71 -0.8
2,533,923 - Psest_2381 0.71 +0.5
2,534,118 + Psest_2381 0.87 +2.3
2,534,118 + Psest_2381 0.87 +2.2
2,534,118 + Psest_2381 0.87 -0.1
2,534,118 + Psest_2381 0.87 -0.1
2,534,118 + Psest_2381 0.87 +2.4
2,534,118 + Psest_2381 0.87 +0.3
2,534,118 + Psest_2381 0.87 -0.4
2,534,118 + Psest_2381 0.87 +0.6
2,534,118 + Psest_2381 0.87 +1.4
2,534,119 - Psest_2381 0.87 +2.2
2,534,119 - Psest_2381 0.87 +1.4
2,534,119 - Psest_2381 0.87 +0.9
2,534,119 - Psest_2381 0.87 +1.0
2,534,119 - Psest_2381 0.87 +3.2
2,534,134 - Psest_2381 0.88 +0.2
2,534,169 + +1.1
2,534,170 - +0.6
2,534,170 - +0.2
2,534,288 - -0.2
2,534,344 + -1.1
2,534,344 + +2.4
2,534,344 + +0.9
2,534,344 + +1.8
2,534,344 + +2.5
2,534,344 + +3.4
2,534,344 + +2.0
2,534,344 + +0.9
2,534,344 + +2.5
2,534,345 - +1.9
2,534,345 - -0.2
2,534,345 - -0.8
2,534,345 - +0.6
2,534,345 - -1.1
2,534,410 - +2.2
2,534,410 - +1.4
2,534,436 + +0.2
2,534,436 + +2.8
2,534,436 + +2.6
2,534,437 - -0.3
2,534,437 - +0.0
2,534,437 - +0.7
2,534,437 - +1.2
2,534,437 - +0.9
2,534,443 + +0.2
2,534,444 - +0.6
2,535,212 + Psest_2382 0.26 +0.7
2,535,213 - Psest_2382 0.26 +0.5
2,535,278 - Psest_2382 0.29 +1.5
2,535,278 - Psest_2382 0.29 +1.3
2,535,280 + Psest_2382 0.29 +0.3
2,535,280 + Psest_2382 0.29 +0.7
2,535,281 - Psest_2382 0.29 +2.6
2,535,281 - Psest_2382 0.29 +1.0
2,535,336 - Psest_2382 0.31 -0.2
2,535,341 + Psest_2382 0.31 +1.4
2,535,341 + Psest_2382 0.31 +1.4
2,535,341 + Psest_2382 0.31 +0.7
2,535,342 - Psest_2382 0.31 +2.2
2,535,342 - Psest_2382 0.31 +1.3
2,535,342 - Psest_2382 0.31 +0.8
2,535,622 - Psest_2382 0.42 -0.6
2,535,622 - Psest_2382 0.42 +1.9
2,535,622 - Psest_2382 0.42 +2.9
2,535,704 + Psest_2382 0.46 -0.2
2,535,833 - Psest_2382 0.51 +1.5
2,536,023 + Psest_2382 0.58 +0.1
2,536,023 + Psest_2382 0.58 +2.2
2,536,024 - Psest_2382 0.58 +1.2
2,536,024 - Psest_2382 0.58 +2.2
2,536,024 - Psest_2382 0.58 +0.8
2,536,024 - Psest_2382 0.58 +1.2
2,536,065 + Psest_2382 0.60 +1.3
2,536,223 - Psest_2382 0.66 -0.6
2,536,484 + Psest_2382 0.76 -0.4
2,536,506 + Psest_2382 0.77 -0.4
2,536,506 + Psest_2382 0.77 -0.7
2,536,506 + Psest_2382 0.77 +1.1
2,536,507 - Psest_2382 0.77 +0.8
2,536,507 - Psest_2382 0.77 +0.4
2,536,683 - Psest_2382 0.84 +1.1
2,536,683 - Psest_2382 0.84 -0.1
2,536,683 - Psest_2382 0.84 -1.1
2,536,738 + Psest_2382 0.86 +1.3
2,537,656 + Psest_2383 0.57 -2.4
2,537,656 + Psest_2383 0.57 -2.6
2,537,657 - Psest_2383 0.57 -0.4
2,537,657 - Psest_2383 0.57 -0.4
2,537,657 - Psest_2383 0.57 -0.4
2,537,657 - Psest_2383 0.57 -0.4
2,537,677 + Psest_2383 0.59 -0.4
2,537,677 + Psest_2383 0.59 -1.1
2,537,678 - Psest_2383 0.59 -2.2
2,537,678 - Psest_2383 0.59 +0.0
2,537,678 - Psest_2383 0.59 -3.0
2,537,678 - Psest_2383 0.59 -1.7
2,537,891 - Psest_2383 0.82 -0.3
2,537,912 + Psest_2383 0.84 -0.4
2,537,912 + Psest_2383 0.84 +0.0
2,538,006 + -1.4
2,538,006 + -0.5
2,538,006 + -0.5
2,538,007 - -0.1
2,538,007 - +0.0
2,538,007 - +0.2
2,538,007 - -0.8

Or see this region's nucleotide sequence