Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2381

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2380 and Psest_2381 are separated by 326 nucleotidesPsest_2381 and Psest_2382 are separated by 270 nucleotides Psest_2380: Psest_2380 - Uncharacterized conserved protein, at 2,531,577 to 2,532,740 _2380 Psest_2381: Psest_2381 - hypothetical protein, at 2,533,067 to 2,534,272 _2381 Psest_2382: Psest_2382 - coenzyme PQQ biosynthesis probable peptidase PqqF, at 2,534,543 to 2,537,083 _2382 Position (kb) 2533 2534 2535Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2532.163 kb on - strand, within Psest_2380at 2532.184 kb on + strand, within Psest_2380at 2532.185 kb on - strand, within Psest_2380at 2532.185 kb on - strand, within Psest_2380at 2532.185 kb on - strand, within Psest_2380at 2532.185 kb on - strand, within Psest_2380at 2532.200 kb on - strand, within Psest_2380at 2532.202 kb on + strand, within Psest_2380at 2532.202 kb on + strand, within Psest_2380at 2532.203 kb on - strand, within Psest_2380at 2532.203 kb on - strand, within Psest_2380at 2532.203 kb on - strand, within Psest_2380at 2532.203 kb on - strand, within Psest_2380at 2532.203 kb on - strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.208 kb on + strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.209 kb on - strand, within Psest_2380at 2532.212 kb on + strand, within Psest_2380at 2532.212 kb on + strand, within Psest_2380at 2532.213 kb on - strand, within Psest_2380at 2532.213 kb on - strand, within Psest_2380at 2532.213 kb on - strand, within Psest_2380at 2532.522 kb on - strand, within Psest_2380at 2532.522 kb on - strand, within Psest_2380at 2532.568 kb on + strand, within Psest_2380at 2532.605 kb on - strand, within Psest_2380at 2532.717 kb on + strandat 2532.718 kb on - strandat 2532.793 kb on + strandat 2532.809 kb on + strandat 2532.810 kb on - strandat 2532.835 kb on + strandat 2532.835 kb on + strandat 2532.835 kb on + strandat 2532.836 kb on - strandat 2532.836 kb on - strandat 2532.839 kb on + strandat 2532.869 kb on + strandat 2532.992 kb on + strandat 2532.992 kb on + strandat 2532.992 kb on + strandat 2532.993 kb on - strandat 2532.993 kb on - strandat 2533.026 kb on + strandat 2533.026 kb on + strandat 2533.026 kb on + strandat 2533.027 kb on - strandat 2533.027 kb on - strandat 2533.069 kb on - strandat 2533.069 kb on - strandat 2533.069 kb on - strandat 2533.069 kb on - strandat 2533.234 kb on + strand, within Psest_2381at 2533.303 kb on - strand, within Psest_2381at 2533.527 kb on + strand, within Psest_2381at 2533.527 kb on + strand, within Psest_2381at 2533.527 kb on + strand, within Psest_2381at 2533.527 kb on + strand, within Psest_2381at 2533.527 kb on + strand, within Psest_2381at 2533.527 kb on + strand, within Psest_2381at 2533.527 kb on + strand, within Psest_2381at 2533.528 kb on - strand, within Psest_2381at 2533.528 kb on - strand, within Psest_2381at 2533.557 kb on + strand, within Psest_2381at 2533.611 kb on + strand, within Psest_2381at 2533.643 kb on - strand, within Psest_2381at 2533.645 kb on + strand, within Psest_2381at 2533.646 kb on - strand, within Psest_2381at 2533.646 kb on - strand, within Psest_2381at 2533.705 kb on - strand, within Psest_2381at 2533.705 kb on - strand, within Psest_2381at 2533.705 kb on - strand, within Psest_2381at 2533.911 kb on + strand, within Psest_2381at 2533.912 kb on - strand, within Psest_2381at 2533.922 kb on + strand, within Psest_2381at 2533.922 kb on + strand, within Psest_2381at 2533.922 kb on + strand, within Psest_2381at 2533.923 kb on - strand, within Psest_2381at 2533.923 kb on - strand, within Psest_2381at 2533.923 kb on - strand, within Psest_2381at 2533.923 kb on - strand, within Psest_2381at 2533.923 kb on - strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.118 kb on + strand, within Psest_2381at 2534.119 kb on - strand, within Psest_2381at 2534.119 kb on - strand, within Psest_2381at 2534.119 kb on - strand, within Psest_2381at 2534.119 kb on - strand, within Psest_2381at 2534.119 kb on - strand, within Psest_2381at 2534.134 kb on - strand, within Psest_2381at 2534.169 kb on + strandat 2534.170 kb on - strandat 2534.170 kb on - strandat 2534.288 kb on - strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.344 kb on + strandat 2534.345 kb on - strandat 2534.345 kb on - strandat 2534.345 kb on - strandat 2534.345 kb on - strandat 2534.345 kb on - strandat 2534.410 kb on - strandat 2534.410 kb on - strandat 2534.436 kb on + strandat 2534.436 kb on + strandat 2534.436 kb on + strandat 2534.437 kb on - strandat 2534.437 kb on - strandat 2534.437 kb on - strandat 2534.437 kb on - strandat 2534.437 kb on - strandat 2534.443 kb on + strandat 2534.444 kb on - strandat 2535.212 kb on + strand, within Psest_2382at 2535.213 kb on - strand, within Psest_2382

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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2,532,163 - Psest_2380 0.50 -0.1
2,532,184 + Psest_2380 0.52 -2.5
2,532,185 - Psest_2380 0.52 +2.0
2,532,185 - Psest_2380 0.52 +2.0
2,532,185 - Psest_2380 0.52 -0.2
2,532,185 - Psest_2380 0.52 +1.8
2,532,200 - Psest_2380 0.54 +1.2
2,532,202 + Psest_2380 0.54 -0.1
2,532,202 + Psest_2380 0.54 -4.1
2,532,203 - Psest_2380 0.54 +0.2
2,532,203 - Psest_2380 0.54 +1.1
2,532,203 - Psest_2380 0.54 +1.5
2,532,203 - Psest_2380 0.54 +1.2
2,532,203 - Psest_2380 0.54 +0.0
2,532,208 + Psest_2380 0.54 -3.7
2,532,208 + Psest_2380 0.54 -2.9
2,532,208 + Psest_2380 0.54 -1.9
2,532,208 + Psest_2380 0.54 -2.4
2,532,208 + Psest_2380 0.54 -1.9
2,532,208 + Psest_2380 0.54 -2.9
2,532,208 + Psest_2380 0.54 -2.5
2,532,208 + Psest_2380 0.54 -1.6
2,532,208 + Psest_2380 0.54 -2.9
2,532,208 + Psest_2380 0.54 -3.8
2,532,208 + Psest_2380 0.54 -3.5
2,532,208 + Psest_2380 0.54 -2.2
2,532,208 + Psest_2380 0.54 -2.1
2,532,208 + Psest_2380 0.54 -3.0
2,532,208 + Psest_2380 0.54 -2.2
2,532,208 + Psest_2380 0.54 -2.1
2,532,208 + Psest_2380 0.54 -1.8
2,532,208 + Psest_2380 0.54 -2.9
2,532,208 + Psest_2380 0.54 -2.7
2,532,208 + Psest_2380 0.54 -2.6
2,532,208 + Psest_2380 0.54 -1.1
2,532,208 + Psest_2380 0.54 -2.2
2,532,208 + Psest_2380 0.54 -4.0
2,532,208 + Psest_2380 0.54 -3.1
2,532,208 + Psest_2380 0.54 -2.9
2,532,208 + Psest_2380 0.54 -2.8
2,532,208 + Psest_2380 0.54 -3.9
2,532,208 + Psest_2380 0.54 -1.4
2,532,209 - Psest_2380 0.54 +0.4
2,532,209 - Psest_2380 0.54 +1.2
2,532,209 - Psest_2380 0.54 -0.2
2,532,209 - Psest_2380 0.54 +1.2
2,532,209 - Psest_2380 0.54 +0.9
2,532,209 - Psest_2380 0.54 -0.5
2,532,209 - Psest_2380 0.54 +0.7
2,532,209 - Psest_2380 0.54 +1.1
2,532,209 - Psest_2380 0.54 +2.8
2,532,209 - Psest_2380 0.54 +0.9
2,532,209 - Psest_2380 0.54 +0.9
2,532,209 - Psest_2380 0.54 +1.5
2,532,209 - Psest_2380 0.54 +0.0
2,532,209 - Psest_2380 0.54 +0.4
2,532,209 - Psest_2380 0.54 +0.6
2,532,209 - Psest_2380 0.54 +1.0
2,532,209 - Psest_2380 0.54 -0.0
2,532,209 - Psest_2380 0.54 -1.1
2,532,209 - Psest_2380 0.54 +1.2
2,532,209 - Psest_2380 0.54 +1.4
2,532,209 - Psest_2380 0.54 +0.9
2,532,209 - Psest_2380 0.54 +0.3
2,532,209 - Psest_2380 0.54 +0.2
2,532,209 - Psest_2380 0.54 +1.2
2,532,209 - Psest_2380 0.54 +1.5
2,532,209 - Psest_2380 0.54 +1.0
2,532,209 - Psest_2380 0.54 +1.3
2,532,209 - Psest_2380 0.54 +2.0
2,532,209 - Psest_2380 0.54 +2.2
2,532,209 - Psest_2380 0.54 +0.4
2,532,209 - Psest_2380 0.54 +1.5
2,532,209 - Psest_2380 0.54 +0.8
2,532,209 - Psest_2380 0.54 +0.6
2,532,209 - Psest_2380 0.54 +1.5
2,532,209 - Psest_2380 0.54 -1.0
2,532,209 - Psest_2380 0.54 +0.9
2,532,209 - Psest_2380 0.54 +0.3
2,532,212 + Psest_2380 0.55 -1.9
2,532,212 + Psest_2380 0.55 -1.8
2,532,213 - Psest_2380 0.55 -0.4
2,532,213 - Psest_2380 0.55 -0.9
2,532,213 - Psest_2380 0.55 -0.4
2,532,522 - Psest_2380 0.81 -2.9
2,532,522 - Psest_2380 0.81 -1.8
2,532,568 + Psest_2380 0.85 -1.4
2,532,605 - Psest_2380 0.88 -1.1
2,532,717 + -1.4
2,532,718 - -2.2
2,532,793 + -1.8
2,532,809 + -3.2
2,532,810 - +0.6
2,532,835 + -2.6
2,532,835 + -1.9
2,532,835 + -2.4
2,532,836 - +0.4
2,532,836 - -1.9
2,532,839 + -1.6
2,532,869 + +0.8
2,532,992 + -0.6
2,532,992 + -0.1
2,532,992 + +1.2
2,532,993 - +0.6
2,532,993 - -0.4
2,533,026 + +1.7
2,533,026 + +1.0
2,533,026 + +1.6
2,533,027 - +1.8
2,533,027 - +1.1
2,533,069 - +1.2
2,533,069 - +3.9
2,533,069 - +2.1
2,533,069 - +1.7
2,533,234 + Psest_2381 0.14 +2.9
2,533,303 - Psest_2381 0.20 +2.1
2,533,527 + Psest_2381 0.38 +0.9
2,533,527 + Psest_2381 0.38 +0.7
2,533,527 + Psest_2381 0.38 +1.6
2,533,527 + Psest_2381 0.38 +1.8
2,533,527 + Psest_2381 0.38 +1.2
2,533,527 + Psest_2381 0.38 +2.5
2,533,527 + Psest_2381 0.38 +1.5
2,533,528 - Psest_2381 0.38 +2.2
2,533,528 - Psest_2381 0.38 +1.7
2,533,557 + Psest_2381 0.41 +1.1
2,533,611 + Psest_2381 0.45 +1.5
2,533,643 - Psest_2381 0.48 +1.2
2,533,645 + Psest_2381 0.48 +2.1
2,533,646 - Psest_2381 0.48 +1.2
2,533,646 - Psest_2381 0.48 +1.9
2,533,705 - Psest_2381 0.53 +3.1
2,533,705 - Psest_2381 0.53 +1.6
2,533,705 - Psest_2381 0.53 +1.4
2,533,911 + Psest_2381 0.70 +1.9
2,533,912 - Psest_2381 0.70 +3.1
2,533,922 + Psest_2381 0.71 +1.2
2,533,922 + Psest_2381 0.71 +2.1
2,533,922 + Psest_2381 0.71 +2.7
2,533,923 - Psest_2381 0.71 +1.0
2,533,923 - Psest_2381 0.71 +1.8
2,533,923 - Psest_2381 0.71 +2.8
2,533,923 - Psest_2381 0.71 -0.8
2,533,923 - Psest_2381 0.71 +0.5
2,534,118 + Psest_2381 0.87 +2.3
2,534,118 + Psest_2381 0.87 +2.2
2,534,118 + Psest_2381 0.87 -0.1
2,534,118 + Psest_2381 0.87 -0.1
2,534,118 + Psest_2381 0.87 +2.4
2,534,118 + Psest_2381 0.87 +0.3
2,534,118 + Psest_2381 0.87 -0.4
2,534,118 + Psest_2381 0.87 +0.6
2,534,118 + Psest_2381 0.87 +1.4
2,534,119 - Psest_2381 0.87 +2.2
2,534,119 - Psest_2381 0.87 +1.4
2,534,119 - Psest_2381 0.87 +0.9
2,534,119 - Psest_2381 0.87 +1.0
2,534,119 - Psest_2381 0.87 +3.2
2,534,134 - Psest_2381 0.88 +0.2
2,534,169 + +1.1
2,534,170 - +0.6
2,534,170 - +0.2
2,534,288 - -0.2
2,534,344 + -1.1
2,534,344 + +2.4
2,534,344 + +0.9
2,534,344 + +1.8
2,534,344 + +2.5
2,534,344 + +3.4
2,534,344 + +2.0
2,534,344 + +0.9
2,534,344 + +2.5
2,534,345 - +1.9
2,534,345 - -0.2
2,534,345 - -0.8
2,534,345 - +0.6
2,534,345 - -1.1
2,534,410 - +2.2
2,534,410 - +1.4
2,534,436 + +0.2
2,534,436 + +2.8
2,534,436 + +2.6
2,534,437 - -0.3
2,534,437 - +0.0
2,534,437 - +0.7
2,534,437 - +1.2
2,534,437 - +0.9
2,534,443 + +0.2
2,534,444 - +0.6
2,535,212 + Psest_2382 0.26 +0.7
2,535,213 - Psest_2382 0.26 +0.5

Or see this region's nucleotide sequence