Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0233 and Psest_0234 are separated by 67 nucleotides Psest_0234 and Psest_0235 are separated by 500 nucleotides
Psest_0233: Psest_0233 - hypothetical protein, at 241,746 to 243,479
_0233
Psest_0234: Psest_0234 - dihydroxy-acid dehydratase, at 243,547 to 245,385
_0234
Psest_0235: Psest_0235 - isoform II., at 245,886 to 246,734
_0235
Position (kb) 243
244
245
246 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 242.653 kb on - strand, within Psest_0233 at 242.951 kb on - strand, within Psest_0233 at 243.084 kb on + strand, within Psest_0233 at 243.084 kb on + strand, within Psest_0233 at 243.119 kb on + strand, within Psest_0233 at 243.119 kb on + strand, within Psest_0233 at 243.232 kb on + strand, within Psest_0233 at 243.232 kb on + strand, within Psest_0233 at 243.232 kb on + strand, within Psest_0233 at 243.232 kb on + strand, within Psest_0233 at 243.232 kb on + strand, within Psest_0233 at 243.233 kb on - strand, within Psest_0233 at 243.233 kb on - strand, within Psest_0233 at 243.233 kb on - strand, within Psest_0233 at 243.233 kb on - strand, within Psest_0233 at 243.233 kb on - strand, within Psest_0233 at 243.233 kb on - strand, within Psest_0233 at 243.406 kb on + strand at 243.407 kb on - strand at 243.526 kb on + strand at 243.526 kb on + strand at 243.527 kb on - strand at 245.419 kb on + strand at 245.419 kb on + strand at 245.419 kb on + strand at 245.419 kb on + strand at 245.420 kb on - strand at 245.420 kb on - strand at 245.420 kb on - strand at 245.420 kb on - strand at 245.425 kb on + strand at 245.425 kb on + strand at 245.426 kb on - strand at 245.550 kb on + strand at 245.551 kb on - strand at 245.562 kb on + strand at 245.562 kb on + strand at 245.563 kb on - strand at 245.563 kb on - strand at 245.654 kb on - strand at 245.747 kb on + strand at 245.747 kb on + strand at 245.747 kb on + strand at 245.748 kb on - strand at 245.826 kb on + strand at 245.851 kb on - strand at 245.851 kb on - strand at 245.851 kb on - strand at 245.857 kb on + strand at 245.859 kb on + strand at 245.859 kb on + strand at 245.859 kb on + strand at 245.859 kb on + strand at 245.859 kb on + strand at 245.907 kb on + strand at 245.908 kb on - strand at 245.908 kb on - strand at 245.908 kb on - strand at 245.908 kb on - strand at 245.908 kb on - strand at 245.911 kb on + strand at 245.911 kb on + strand at 245.912 kb on - strand at 246.022 kb on - strand, within Psest_0235 at 246.147 kb on + strand, within Psest_0235 at 246.147 kb on + strand, within Psest_0235 at 246.148 kb on - strand, within Psest_0235 at 246.148 kb on - strand, within Psest_0235 at 246.148 kb on - strand, within Psest_0235 at 246.249 kb on + strand, within Psest_0235 at 246.249 kb on + strand, within Psest_0235 at 246.250 kb on - strand, within Psest_0235 at 246.276 kb on + strand, within Psest_0235 at 246.276 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.285 kb on + strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.286 kb on - strand, within Psest_0235 at 246.318 kb on - strand, within Psest_0235 at 246.318 kb on - strand, within Psest_0235
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 242,653 - Psest_0233 0.52 -0.1 242,951 - Psest_0233 0.69 -1.1 243,084 + Psest_0233 0.77 -1.0 243,084 + Psest_0233 0.77 +0.2 243,119 + Psest_0233 0.79 +1.9 243,119 + Psest_0233 0.79 +1.1 243,232 + Psest_0233 0.86 +1.1 243,232 + Psest_0233 0.86 +2.2 243,232 + Psest_0233 0.86 +0.2 243,232 + Psest_0233 0.86 +2.1 243,232 + Psest_0233 0.86 +1.1 243,233 - Psest_0233 0.86 +0.9 243,233 - Psest_0233 0.86 +0.9 243,233 - Psest_0233 0.86 -1.1 243,233 - Psest_0233 0.86 +0.0 243,233 - Psest_0233 0.86 +0.0 243,233 - Psest_0233 0.86 +0.1 243,406 + +1.3 243,407 - +0.6 243,526 + +0.3 243,526 + -1.1 243,527 - +0.4 245,419 + -1.9 245,419 + -1.4 245,419 + -0.1 245,419 + -1.9 245,420 - -1.6 245,420 - -0.2 245,420 - -3.0 245,420 - -1.1 245,425 + -1.9 245,425 + -0.8 245,426 - +0.9 245,550 + +0.1 245,551 - -1.5 245,562 + +0.8 245,562 + -0.7 245,563 - -2.1 245,563 - -0.8 245,654 - -1.9 245,747 + -0.4 245,747 + +0.4 245,747 + -0.2 245,748 - -0.7 245,826 + -0.3 245,851 - -0.1 245,851 - -0.3 245,851 - +0.8 245,857 + -0.9 245,859 + +0.3 245,859 + +0.0 245,859 + -1.1 245,859 + +0.2 245,859 + -0.7 245,907 + -1.1 245,908 - +0.3 245,908 - -0.1 245,908 - -1.7 245,908 - +0.1 245,908 - -0.7 245,911 + +0.1 245,911 + -0.3 245,912 - +0.4 246,022 - Psest_0235 0.16 -0.2 246,147 + Psest_0235 0.31 -0.1 246,147 + Psest_0235 0.31 -1.9 246,148 - Psest_0235 0.31 +2.2 246,148 - Psest_0235 0.31 -1.0 246,148 - Psest_0235 0.31 +0.2 246,249 + Psest_0235 0.43 -0.5 246,249 + Psest_0235 0.43 -0.0 246,250 - Psest_0235 0.43 +1.1 246,276 + Psest_0235 0.46 +0.6 246,276 + Psest_0235 0.46 -0.1 246,285 + Psest_0235 0.47 +0.7 246,285 + Psest_0235 0.47 -0.2 246,285 + Psest_0235 0.47 +0.9 246,285 + Psest_0235 0.47 +0.2 246,285 + Psest_0235 0.47 +0.2 246,285 + Psest_0235 0.47 +0.2 246,285 + Psest_0235 0.47 +0.1 246,285 + Psest_0235 0.47 +0.7 246,285 + Psest_0235 0.47 +0.9 246,286 - Psest_0235 0.47 +0.9 246,286 - Psest_0235 0.47 -2.1 246,286 - Psest_0235 0.47 +1.4 246,286 - Psest_0235 0.47 +0.0 246,286 - Psest_0235 0.47 -0.7 246,286 - Psest_0235 0.47 +0.6 246,286 - Psest_0235 0.47 +0.3 246,286 - Psest_0235 0.47 -0.6 246,318 - Psest_0235 0.51 -0.2 246,318 - Psest_0235 0.51 +0.9
Or see this region's nucleotide sequence