Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2336

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2334 and Psest_2335 are separated by 66 nucleotidesPsest_2335 and Psest_2336 are separated by 43 nucleotidesPsest_2336 and Psest_2337 are separated by 11 nucleotidesPsest_2337 and Psest_2338 overlap by 4 nucleotides Psest_2334: Psest_2334 - Uncharacterized protein conserved in bacteria, at 2,487,726 to 2,488,691 _2334 Psest_2335: Psest_2335 - hypothetical protein, at 2,488,758 to 2,489,039 _2335 Psest_2336: Psest_2336 - Lysophospholipase L1 and related esterases, at 2,489,083 to 2,489,688 _2336 Psest_2337: Psest_2337 - Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component, at 2,489,700 to 2,490,386 _2337 Psest_2338: Psest_2338 - Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component, at 2,490,383 to 2,492,887 _2338 Position (kb) 2489 2490Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2488.150 kb on + strand, within Psest_2334at 2488.151 kb on - strand, within Psest_2334at 2488.151 kb on - strand, within Psest_2334at 2488.274 kb on + strand, within Psest_2334at 2488.274 kb on + strand, within Psest_2334at 2488.274 kb on + strand, within Psest_2334at 2488.274 kb on + strand, within Psest_2334at 2488.275 kb on - strand, within Psest_2334at 2488.275 kb on - strand, within Psest_2334at 2488.275 kb on - strand, within Psest_2334at 2488.275 kb on - strand, within Psest_2334at 2488.331 kb on + strand, within Psest_2334at 2488.331 kb on + strand, within Psest_2334at 2488.331 kb on + strand, within Psest_2334at 2488.331 kb on + strand, within Psest_2334at 2488.331 kb on + strand, within Psest_2334at 2488.332 kb on - strand, within Psest_2334at 2488.332 kb on - strand, within Psest_2334at 2488.332 kb on - strand, within Psest_2334at 2488.332 kb on - strand, within Psest_2334at 2488.332 kb on - strand, within Psest_2334at 2488.332 kb on - strand, within Psest_2334at 2488.332 kb on - strand, within Psest_2334at 2488.332 kb on - strand, within Psest_2334at 2488.357 kb on + strand, within Psest_2334at 2488.358 kb on - strand, within Psest_2334at 2488.360 kb on + strand, within Psest_2334at 2488.360 kb on + strand, within Psest_2334at 2488.360 kb on + strand, within Psest_2334at 2488.360 kb on + strand, within Psest_2334at 2488.360 kb on + strand, within Psest_2334at 2488.360 kb on + strand, within Psest_2334at 2488.360 kb on + strand, within Psest_2334at 2488.360 kb on + strand, within Psest_2334at 2488.360 kb on + strand, within Psest_2334at 2488.361 kb on - strand, within Psest_2334at 2488.361 kb on - strand, within Psest_2334at 2488.361 kb on - strand, within Psest_2334at 2488.361 kb on - strand, within Psest_2334at 2488.361 kb on - strand, within Psest_2334at 2488.363 kb on + strand, within Psest_2334at 2488.363 kb on + strand, within Psest_2334at 2488.363 kb on + strand, within Psest_2334at 2488.363 kb on + strand, within Psest_2334at 2488.364 kb on - strand, within Psest_2334at 2488.382 kb on + strand, within Psest_2334at 2488.383 kb on - strand, within Psest_2334at 2488.550 kb on - strand, within Psest_2334at 2488.550 kb on - strand, within Psest_2334at 2488.550 kb on - strand, within Psest_2334at 2488.550 kb on - strand, within Psest_2334at 2488.734 kb on + strandat 2488.734 kb on + strandat 2488.760 kb on - strandat 2489.014 kb on + strandat 2489.067 kb on + strandat 2489.154 kb on + strand, within Psest_2336at 2489.154 kb on + strand, within Psest_2336at 2489.154 kb on + strand, within Psest_2336at 2489.155 kb on - strand, within Psest_2336at 2489.213 kb on + strand, within Psest_2336at 2489.213 kb on + strand, within Psest_2336at 2489.213 kb on + strand, within Psest_2336at 2489.213 kb on + strand, within Psest_2336at 2489.213 kb on + strand, within Psest_2336at 2489.213 kb on + strand, within Psest_2336at 2489.213 kb on + strand, within Psest_2336at 2489.213 kb on + strand, within Psest_2336at 2489.213 kb on + strand, within Psest_2336at 2489.214 kb on - strand, within Psest_2336at 2489.214 kb on - strand, within Psest_2336at 2489.214 kb on - strand, within Psest_2336at 2489.214 kb on - strand, within Psest_2336at 2489.214 kb on - strand, within Psest_2336at 2489.214 kb on - strand, within Psest_2336at 2489.214 kb on - strand, within Psest_2336at 2489.214 kb on - strand, within Psest_2336at 2489.295 kb on + strand, within Psest_2336at 2489.295 kb on + strand, within Psest_2336at 2489.296 kb on - strand, within Psest_2336at 2489.446 kb on + strand, within Psest_2336at 2489.496 kb on + strand, within Psest_2336at 2489.496 kb on + strand, within Psest_2336at 2489.598 kb on + strand, within Psest_2336at 2489.599 kb on - strand, within Psest_2336at 2489.599 kb on - strand, within Psest_2336at 2489.602 kb on - strand, within Psest_2336at 2489.682 kb on + strandat 2489.682 kb on + strandat 2489.683 kb on - strandat 2489.683 kb on - strandat 2489.683 kb on - strandat 2489.683 kb on - strandat 2489.733 kb on - strandat 2489.788 kb on + strand, within Psest_2337at 2489.789 kb on - strand, within Psest_2337at 2490.190 kb on + strand, within Psest_2337at 2490.190 kb on + strand, within Psest_2337at 2490.190 kb on + strand, within Psest_2337at 2490.191 kb on - strand, within Psest_2337at 2490.191 kb on - strand, within Psest_2337at 2490.191 kb on - strand, within Psest_2337at 2490.282 kb on - strand, within Psest_2337at 2490.582 kb on + strandat 2490.583 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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2,488,150 + Psest_2334 0.44 -1.6
2,488,151 - Psest_2334 0.44 -1.5
2,488,151 - Psest_2334 0.44 -1.4
2,488,274 + Psest_2334 0.57 -0.6
2,488,274 + Psest_2334 0.57 -2.1
2,488,274 + Psest_2334 0.57 -1.8
2,488,274 + Psest_2334 0.57 -1.5
2,488,275 - Psest_2334 0.57 -2.5
2,488,275 - Psest_2334 0.57 -1.9
2,488,275 - Psest_2334 0.57 +0.1
2,488,275 - Psest_2334 0.57 -0.7
2,488,331 + Psest_2334 0.63 -0.3
2,488,331 + Psest_2334 0.63 -1.3
2,488,331 + Psest_2334 0.63 -2.2
2,488,331 + Psest_2334 0.63 -2.9
2,488,331 + Psest_2334 0.63 -2.2
2,488,332 - Psest_2334 0.63 +0.1
2,488,332 - Psest_2334 0.63 +2.2
2,488,332 - Psest_2334 0.63 -1.3
2,488,332 - Psest_2334 0.63 +0.4
2,488,332 - Psest_2334 0.63 +0.3
2,488,332 - Psest_2334 0.63 -1.9
2,488,332 - Psest_2334 0.63 -0.9
2,488,332 - Psest_2334 0.63 +0.2
2,488,357 + Psest_2334 0.65 -1.7
2,488,358 - Psest_2334 0.65 -0.1
2,488,360 + Psest_2334 0.66 -1.2
2,488,360 + Psest_2334 0.66 -1.5
2,488,360 + Psest_2334 0.66 -1.3
2,488,360 + Psest_2334 0.66 -1.3
2,488,360 + Psest_2334 0.66 -1.8
2,488,360 + Psest_2334 0.66 -2.1
2,488,360 + Psest_2334 0.66 -0.9
2,488,360 + Psest_2334 0.66 -2.9
2,488,360 + Psest_2334 0.66 -3.4
2,488,361 - Psest_2334 0.66 -0.5
2,488,361 - Psest_2334 0.66 -1.7
2,488,361 - Psest_2334 0.66 -0.6
2,488,361 - Psest_2334 0.66 -2.8
2,488,361 - Psest_2334 0.66 -0.6
2,488,363 + Psest_2334 0.66 -1.3
2,488,363 + Psest_2334 0.66 +1.2
2,488,363 + Psest_2334 0.66 -2.1
2,488,363 + Psest_2334 0.66 -2.9
2,488,364 - Psest_2334 0.66 -0.8
2,488,382 + Psest_2334 0.68 -1.1
2,488,383 - Psest_2334 0.68 +1.2
2,488,550 - Psest_2334 0.85 -2.5
2,488,550 - Psest_2334 0.85 -3.2
2,488,550 - Psest_2334 0.85 -0.6
2,488,550 - Psest_2334 0.85 -2.4
2,488,734 + +0.1
2,488,734 + -1.8
2,488,760 - -1.3
2,489,014 + +1.7
2,489,067 + -1.6
2,489,154 + Psest_2336 0.12 +0.6
2,489,154 + Psest_2336 0.12 -2.2
2,489,154 + Psest_2336 0.12 -0.8
2,489,155 - Psest_2336 0.12 -1.8
2,489,213 + Psest_2336 0.21 -0.6
2,489,213 + Psest_2336 0.21 -2.6
2,489,213 + Psest_2336 0.21 -0.8
2,489,213 + Psest_2336 0.21 -2.2
2,489,213 + Psest_2336 0.21 -1.2
2,489,213 + Psest_2336 0.21 -1.0
2,489,213 + Psest_2336 0.21 +0.2
2,489,213 + Psest_2336 0.21 -0.7
2,489,213 + Psest_2336 0.21 -2.7
2,489,214 - Psest_2336 0.22 -2.1
2,489,214 - Psest_2336 0.22 -1.0
2,489,214 - Psest_2336 0.22 -0.5
2,489,214 - Psest_2336 0.22 +0.5
2,489,214 - Psest_2336 0.22 +0.3
2,489,214 - Psest_2336 0.22 -0.0
2,489,214 - Psest_2336 0.22 +4.7
2,489,214 - Psest_2336 0.22 +0.2
2,489,295 + Psest_2336 0.35 -1.1
2,489,295 + Psest_2336 0.35 -1.6
2,489,296 - Psest_2336 0.35 -0.5
2,489,446 + Psest_2336 0.60 +0.2
2,489,496 + Psest_2336 0.68 -2.9
2,489,496 + Psest_2336 0.68 -1.8
2,489,598 + Psest_2336 0.85 -0.7
2,489,599 - Psest_2336 0.85 -1.4
2,489,599 - Psest_2336 0.85 +1.5
2,489,602 - Psest_2336 0.86 -0.1
2,489,682 + +0.5
2,489,682 + +1.2
2,489,683 - -1.0
2,489,683 - +1.5
2,489,683 - +0.6
2,489,683 - -0.8
2,489,733 - +0.2
2,489,788 + Psest_2337 0.13 +0.7
2,489,789 - Psest_2337 0.13 +0.3
2,490,190 + Psest_2337 0.71 +1.2
2,490,190 + Psest_2337 0.71 -0.5
2,490,190 + Psest_2337 0.71 -1.0
2,490,191 - Psest_2337 0.71 +0.4
2,490,191 - Psest_2337 0.71 -0.6
2,490,191 - Psest_2337 0.71 +0.2
2,490,282 - Psest_2337 0.85 +0.3
2,490,582 + +0.2
2,490,583 - -0.0

Or see this region's nucleotide sequence