Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2322 and Psest_2323 are separated by 171 nucleotides Psest_2323 and Psest_2324 are separated by 5 nucleotides Psest_2324 and Psest_2325 are separated by 3 nucleotides
Psest_2322: Psest_2322 - Transcriptional regulators, at 2,476,141 to 2,476,866
_2322
Psest_2323: Psest_2323 - Uncharacterized protein conserved in archaea, at 2,477,038 to 2,477,670
_2323
Psest_2324: Psest_2324 - hypothetical protein, at 2,477,676 to 2,479,202
_2324
Psest_2325: Psest_2325 - alpha-L-glutamate ligase-related protein, at 2,479,206 to 2,480,189
_2325
Position (kb)
2477
2478
2479
2480 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2476.715 kb on + strand, within Psest_2322 at 2476.715 kb on + strand, within Psest_2322 at 2476.716 kb on - strand, within Psest_2322 at 2476.716 kb on - strand, within Psest_2322 at 2476.911 kb on + strand at 2476.911 kb on + strand at 2476.958 kb on - strand at 2476.981 kb on - strand at 2477.042 kb on + strand at 2477.042 kb on + strand at 2477.043 kb on - strand at 2477.043 kb on - strand at 2477.043 kb on - strand at 2477.043 kb on - strand at 2477.142 kb on + strand, within Psest_2323 at 2477.142 kb on + strand, within Psest_2323 at 2477.142 kb on + strand, within Psest_2323 at 2477.143 kb on - strand, within Psest_2323 at 2477.169 kb on - strand, within Psest_2323 at 2477.169 kb on - strand, within Psest_2323 at 2477.169 kb on - strand, within Psest_2323 at 2477.212 kb on + strand, within Psest_2323 at 2477.212 kb on + strand, within Psest_2323 at 2477.212 kb on + strand, within Psest_2323 at 2477.212 kb on + strand, within Psest_2323 at 2477.212 kb on + strand, within Psest_2323 at 2477.213 kb on - strand, within Psest_2323 at 2477.213 kb on - strand, within Psest_2323 at 2477.213 kb on - strand, within Psest_2323 at 2477.213 kb on - strand, within Psest_2323 at 2477.213 kb on - strand, within Psest_2323 at 2477.298 kb on + strand, within Psest_2323 at 2477.298 kb on + strand, within Psest_2323 at 2477.298 kb on + strand, within Psest_2323 at 2477.299 kb on - strand, within Psest_2323 at 2477.299 kb on - strand, within Psest_2323 at 2477.299 kb on - strand, within Psest_2323 at 2477.299 kb on - strand, within Psest_2323 at 2477.299 kb on - strand, within Psest_2323 at 2477.299 kb on - strand, within Psest_2323 at 2477.299 kb on - strand, within Psest_2323 at 2477.299 kb on - strand, within Psest_2323 at 2477.299 kb on - strand, within Psest_2323 at 2477.299 kb on - strand, within Psest_2323 at 2477.354 kb on - strand, within Psest_2323 at 2477.354 kb on - strand, within Psest_2323 at 2477.354 kb on - strand, within Psest_2323 at 2477.354 kb on - strand, within Psest_2323 at 2477.354 kb on - strand, within Psest_2323 at 2477.354 kb on - strand, within Psest_2323 at 2477.461 kb on + strand, within Psest_2323 at 2477.461 kb on + strand, within Psest_2323 at 2477.461 kb on + strand, within Psest_2323 at 2477.461 kb on + strand, within Psest_2323 at 2477.462 kb on - strand, within Psest_2323 at 2477.462 kb on - strand, within Psest_2323 at 2477.462 kb on - strand, within Psest_2323 at 2477.508 kb on + strand, within Psest_2323 at 2477.508 kb on + strand, within Psest_2323 at 2477.509 kb on - strand, within Psest_2323 at 2477.622 kb on + strand at 2477.668 kb on + strand at 2477.668 kb on + strand at 2477.669 kb on - strand at 2477.669 kb on - strand at 2477.669 kb on - strand at 2477.669 kb on - strand at 2477.672 kb on - strand at 2477.865 kb on + strand, within Psest_2324 at 2477.865 kb on + strand, within Psest_2324 at 2477.865 kb on + strand, within Psest_2324 at 2477.865 kb on + strand, within Psest_2324 at 2477.865 kb on + strand, within Psest_2324 at 2477.865 kb on + strand, within Psest_2324 at 2477.865 kb on + strand, within Psest_2324 at 2477.865 kb on + strand, within Psest_2324 at 2477.866 kb on - strand, within Psest_2324 at 2477.866 kb on - strand, within Psest_2324 at 2477.866 kb on - strand, within Psest_2324 at 2477.866 kb on - strand, within Psest_2324 at 2477.866 kb on - strand, within Psest_2324 at 2477.866 kb on - strand, within Psest_2324 at 2477.866 kb on - strand, within Psest_2324 at 2477.866 kb on - strand, within Psest_2324 at 2477.866 kb on - strand, within Psest_2324 at 2477.866 kb on - strand, within Psest_2324 at 2477.866 kb on - strand, within Psest_2324 at 2477.866 kb on - strand, within Psest_2324 at 2477.925 kb on + strand, within Psest_2324 at 2477.925 kb on + strand, within Psest_2324 at 2477.925 kb on + strand, within Psest_2324 at 2477.925 kb on + strand, within Psest_2324 at 2477.925 kb on + strand, within Psest_2324 at 2477.925 kb on + strand, within Psest_2324 at 2477.925 kb on + strand, within Psest_2324 at 2477.925 kb on + strand, within Psest_2324 at 2477.925 kb on + strand, within Psest_2324 at 2477.925 kb on + strand, within Psest_2324 at 2477.925 kb on + strand, within Psest_2324 at 2477.925 kb on + strand, within Psest_2324 at 2477.925 kb on + strand, within Psest_2324 at 2477.926 kb on - strand, within Psest_2324 at 2477.926 kb on - strand, within Psest_2324 at 2477.926 kb on - strand, within Psest_2324 at 2477.926 kb on - strand, within Psest_2324 at 2477.926 kb on - strand, within Psest_2324 at 2477.926 kb on - strand, within Psest_2324 at 2477.926 kb on - strand, within Psest_2324 at 2477.926 kb on - strand, within Psest_2324 at 2477.926 kb on - strand, within Psest_2324 at 2477.926 kb on - strand, within Psest_2324 at 2478.006 kb on + strand, within Psest_2324 at 2478.006 kb on + strand, within Psest_2324 at 2478.006 kb on + strand, within Psest_2324 at 2478.007 kb on - strand, within Psest_2324 at 2478.007 kb on - strand, within Psest_2324 at 2478.007 kb on - strand, within Psest_2324 at 2478.007 kb on - strand, within Psest_2324 at 2478.007 kb on - strand, within Psest_2324 at 2478.007 kb on - strand, within Psest_2324 at 2478.007 kb on - strand, within Psest_2324 at 2478.220 kb on + strand, within Psest_2324 at 2478.220 kb on + strand, within Psest_2324 at 2478.305 kb on - strand, within Psest_2324 at 2478.305 kb on - strand, within Psest_2324 at 2478.577 kb on - strand, within Psest_2324 at 2478.585 kb on + strand, within Psest_2324 at 2478.615 kb on + strand, within Psest_2324 at 2478.615 kb on + strand, within Psest_2324 at 2478.646 kb on + strand, within Psest_2324 at 2478.653 kb on - strand, within Psest_2324 at 2478.801 kb on + strand, within Psest_2324 at 2478.802 kb on - strand, within Psest_2324 at 2478.802 kb on - strand, within Psest_2324 at 2478.802 kb on - strand, within Psest_2324 at 2478.896 kb on + strand, within Psest_2324 at 2478.897 kb on - strand, within Psest_2324 at 2479.080 kb on + strand at 2479.080 kb on + strand at 2479.080 kb on + strand at 2479.081 kb on - strand at 2479.081 kb on - strand at 2479.081 kb on - strand at 2479.081 kb on - strand at 2479.147 kb on - strand at 2479.281 kb on + strand at 2479.281 kb on + strand at 2479.281 kb on + strand at 2479.281 kb on + strand at 2479.282 kb on - strand at 2479.282 kb on - strand at 2479.282 kb on - strand at 2479.282 kb on - strand at 2479.282 kb on - strand at 2479.293 kb on + strand at 2479.294 kb on - strand at 2479.383 kb on + strand, within Psest_2325 at 2479.383 kb on + strand, within Psest_2325 at 2479.384 kb on - strand, within Psest_2325 at 2479.384 kb on - strand, within Psest_2325 at 2479.384 kb on - strand, within Psest_2325 at 2479.521 kb on + strand, within Psest_2325 at 2479.522 kb on - strand, within Psest_2325 at 2479.597 kb on - strand, within Psest_2325 at 2479.597 kb on - strand, within Psest_2325 at 2479.674 kb on + strand, within Psest_2325 at 2479.674 kb on + strand, within Psest_2325 at 2479.675 kb on - strand, within Psest_2325 at 2479.675 kb on - strand, within Psest_2325 at 2479.675 kb on - strand, within Psest_2325 at 2479.675 kb on - strand, within Psest_2325 at 2479.675 kb on - strand, within Psest_2325 at 2479.769 kb on + strand, within Psest_2325 at 2479.938 kb on + strand, within Psest_2325 at 2479.938 kb on + strand, within Psest_2325 at 2479.939 kb on - strand, within Psest_2325 at 2479.959 kb on + strand, within Psest_2325 at 2479.959 kb on + strand, within Psest_2325 at 2479.959 kb on + strand, within Psest_2325 at 2479.960 kb on - strand, within Psest_2325
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,476,715 + Psest_2322 0.79 -1.3 2,476,715 + Psest_2322 0.79 -0.1 2,476,716 - Psest_2322 0.79 +2.1 2,476,716 - Psest_2322 0.79 -0.6 2,476,911 + +1.3 2,476,911 + -1.2 2,476,958 - -0.3 2,476,981 - -2.2 2,477,042 + -2.1 2,477,042 + +0.3 2,477,043 - -3.1 2,477,043 - +1.1 2,477,043 - -2.3 2,477,043 - -3.1 2,477,142 + Psest_2323 0.16 -1.3 2,477,142 + Psest_2323 0.16 -3.6 2,477,142 + Psest_2323 0.16 -2.8 2,477,143 - Psest_2323 0.17 -1.9 2,477,169 - Psest_2323 0.21 -0.9 2,477,169 - Psest_2323 0.21 -1.9 2,477,169 - Psest_2323 0.21 -0.6 2,477,212 + Psest_2323 0.27 -2.9 2,477,212 + Psest_2323 0.27 -2.9 2,477,212 + Psest_2323 0.27 -3.7 2,477,212 + Psest_2323 0.27 -1.0 2,477,212 + Psest_2323 0.27 -2.3 2,477,213 - Psest_2323 0.28 -2.5 2,477,213 - Psest_2323 0.28 -3.5 2,477,213 - Psest_2323 0.28 -0.7 2,477,213 - Psest_2323 0.28 -2.3 2,477,213 - Psest_2323 0.28 -2.4 2,477,298 + Psest_2323 0.41 -3.1 2,477,298 + Psest_2323 0.41 -1.9 2,477,298 + Psest_2323 0.41 -1.8 2,477,299 - Psest_2323 0.41 -0.7 2,477,299 - Psest_2323 0.41 -1.8 2,477,299 - Psest_2323 0.41 -2.6 2,477,299 - Psest_2323 0.41 -1.0 2,477,299 - Psest_2323 0.41 -3.5 2,477,299 - Psest_2323 0.41 -3.8 2,477,299 - Psest_2323 0.41 -2.2 2,477,299 - Psest_2323 0.41 -2.2 2,477,299 - Psest_2323 0.41 -3.6 2,477,299 - Psest_2323 0.41 +0.3 2,477,354 - Psest_2323 0.50 -1.5 2,477,354 - Psest_2323 0.50 -4.1 2,477,354 - Psest_2323 0.50 -3.4 2,477,354 - Psest_2323 0.50 -3.1 2,477,354 - Psest_2323 0.50 -2.9 2,477,354 - Psest_2323 0.50 -2.8 2,477,461 + Psest_2323 0.67 -3.6 2,477,461 + Psest_2323 0.67 -3.9 2,477,461 + Psest_2323 0.67 -3.0 2,477,461 + Psest_2323 0.67 -2.5 2,477,462 - Psest_2323 0.67 -3.9 2,477,462 - Psest_2323 0.67 -1.7 2,477,462 - Psest_2323 0.67 -0.3 2,477,508 + Psest_2323 0.74 -2.5 2,477,508 + Psest_2323 0.74 -1.6 2,477,509 - Psest_2323 0.74 -3.2 2,477,622 + -0.0 2,477,668 + -2.7 2,477,668 + -0.7 2,477,669 - -1.9 2,477,669 - -1.6 2,477,669 - -2.8 2,477,669 - +0.7 2,477,672 - -3.6 2,477,865 + Psest_2324 0.12 -3.0 2,477,865 + Psest_2324 0.12 -3.5 2,477,865 + Psest_2324 0.12 -2.0 2,477,865 + Psest_2324 0.12 -3.7 2,477,865 + Psest_2324 0.12 -0.3 2,477,865 + Psest_2324 0.12 -1.7 2,477,865 + Psest_2324 0.12 -1.2 2,477,865 + Psest_2324 0.12 -2.8 2,477,866 - Psest_2324 0.12 -2.1 2,477,866 - Psest_2324 0.12 -1.7 2,477,866 - Psest_2324 0.12 -3.2 2,477,866 - Psest_2324 0.12 -3.2 2,477,866 - Psest_2324 0.12 -2.6 2,477,866 - Psest_2324 0.12 -2.3 2,477,866 - Psest_2324 0.12 -3.4 2,477,866 - Psest_2324 0.12 -0.4 2,477,866 - Psest_2324 0.12 -0.2 2,477,866 - Psest_2324 0.12 -1.7 2,477,866 - Psest_2324 0.12 -3.1 2,477,866 - Psest_2324 0.12 -3.8 2,477,925 + Psest_2324 0.16 -0.3 2,477,925 + Psest_2324 0.16 -3.4 2,477,925 + Psest_2324 0.16 -3.0 2,477,925 + Psest_2324 0.16 -1.7 2,477,925 + Psest_2324 0.16 -0.8 2,477,925 + Psest_2324 0.16 -1.8 2,477,925 + Psest_2324 0.16 -2.6 2,477,925 + Psest_2324 0.16 -2.8 2,477,925 + Psest_2324 0.16 -3.2 2,477,925 + Psest_2324 0.16 -1.5 2,477,925 + Psest_2324 0.16 -2.4 2,477,925 + Psest_2324 0.16 -3.5 2,477,925 + Psest_2324 0.16 -3.1 2,477,926 - Psest_2324 0.16 -0.7 2,477,926 - Psest_2324 0.16 -2.6 2,477,926 - Psest_2324 0.16 -3.3 2,477,926 - Psest_2324 0.16 -3.0 2,477,926 - Psest_2324 0.16 -4.4 2,477,926 - Psest_2324 0.16 -3.6 2,477,926 - Psest_2324 0.16 -2.4 2,477,926 - Psest_2324 0.16 -1.0 2,477,926 - Psest_2324 0.16 -1.8 2,477,926 - Psest_2324 0.16 -1.7 2,478,006 + Psest_2324 0.22 -2.8 2,478,006 + Psest_2324 0.22 -3.9 2,478,006 + Psest_2324 0.22 -1.5 2,478,007 - Psest_2324 0.22 -4.7 2,478,007 - Psest_2324 0.22 -2.4 2,478,007 - Psest_2324 0.22 -1.3 2,478,007 - Psest_2324 0.22 -1.4 2,478,007 - Psest_2324 0.22 -1.5 2,478,007 - Psest_2324 0.22 -1.7 2,478,007 - Psest_2324 0.22 -4.0 2,478,220 + Psest_2324 0.36 -2.8 2,478,220 + Psest_2324 0.36 -2.3 2,478,305 - Psest_2324 0.41 -0.7 2,478,305 - Psest_2324 0.41 -3.9 2,478,577 - Psest_2324 0.59 -2.5 2,478,585 + Psest_2324 0.60 -4.3 2,478,615 + Psest_2324 0.61 -1.0 2,478,615 + Psest_2324 0.61 -1.9 2,478,646 + Psest_2324 0.64 -1.0 2,478,653 - Psest_2324 0.64 -2.0 2,478,801 + Psest_2324 0.74 -3.0 2,478,802 - Psest_2324 0.74 -3.0 2,478,802 - Psest_2324 0.74 -3.7 2,478,802 - Psest_2324 0.74 -2.3 2,478,896 + Psest_2324 0.80 -0.7 2,478,897 - Psest_2324 0.80 -1.2 2,479,080 + +0.3 2,479,080 + -0.3 2,479,080 + -1.7 2,479,081 - -2.1 2,479,081 - -1.1 2,479,081 - -0.1 2,479,081 - -1.7 2,479,147 - -1.1 2,479,281 + -2.6 2,479,281 + -1.1 2,479,281 + -3.0 2,479,281 + -3.4 2,479,282 - -1.3 2,479,282 - -1.9 2,479,282 - -3.1 2,479,282 - -2.7 2,479,282 - -4.0 2,479,293 + -1.5 2,479,294 - -1.2 2,479,383 + Psest_2325 0.18 -2.3 2,479,383 + Psest_2325 0.18 -3.6 2,479,384 - Psest_2325 0.18 -3.5 2,479,384 - Psest_2325 0.18 -2.0 2,479,384 - Psest_2325 0.18 -3.6 2,479,521 + Psest_2325 0.32 -3.3 2,479,522 - Psest_2325 0.32 -2.4 2,479,597 - Psest_2325 0.40 -3.2 2,479,597 - Psest_2325 0.40 -2.6 2,479,674 + Psest_2325 0.48 -3.2 2,479,674 + Psest_2325 0.48 -2.5 2,479,675 - Psest_2325 0.48 -4.4 2,479,675 - Psest_2325 0.48 -4.0 2,479,675 - Psest_2325 0.48 -1.3 2,479,675 - Psest_2325 0.48 -2.9 2,479,675 - Psest_2325 0.48 -0.3 2,479,769 + Psest_2325 0.57 -2.7 2,479,938 + Psest_2325 0.74 -2.1 2,479,938 + Psest_2325 0.74 -2.6 2,479,939 - Psest_2325 0.74 -1.5 2,479,959 + Psest_2325 0.77 +1.3 2,479,959 + Psest_2325 0.77 -2.7 2,479,959 + Psest_2325 0.77 -0.7 2,479,960 - Psest_2325 0.77 -3.7
Or see this region's nucleotide sequence