Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2307 and Psest_2308 are separated by 33 nucleotides Psest_2308 and Psest_2309 are separated by 358 nucleotides Psest_2309 and Psest_2310 are separated by 279 nucleotides
Psest_2307: Psest_2307 - Universal stress protein UspA and related nucleotide-binding proteins, at 2,457,318 to 2,458,178
_2307
Psest_2308: Psest_2308 - Predicted Fe-S protein, at 2,458,212 to 2,458,718
_2308
Psest_2309: Psest_2309 - aconitate hydratase 2, at 2,459,077 to 2,461,704
_2309
Psest_2310: Psest_2310 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 2,461,984 to 2,462,976
_2310
Position (kb)
2459
2460
2461
2462 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2458.082 kb on + strand, within Psest_2307 at 2458.412 kb on - strand, within Psest_2308 at 2458.574 kb on - strand, within Psest_2308 at 2458.688 kb on + strand at 2458.689 kb on - strand at 2458.689 kb on - strand at 2458.689 kb on - strand at 2458.751 kb on + strand at 2458.751 kb on + strand at 2458.751 kb on + strand at 2458.752 kb on - strand at 2458.752 kb on - strand at 2458.752 kb on - strand at 2458.752 kb on - strand at 2458.752 kb on - strand at 2458.809 kb on + strand at 2461.769 kb on - strand at 2461.867 kb on - strand at 2461.867 kb on - strand at 2461.971 kb on + strand at 2461.972 kb on - strand at 2461.972 kb on - strand at 2462.003 kb on - strand at 2462.003 kb on - strand at 2462.535 kb on - strand, within Psest_2310
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,458,082 + Psest_2307 0.89 +3.3 2,458,412 - Psest_2308 0.39 +2.3 2,458,574 - Psest_2308 0.71 -2.1 2,458,688 + -1.1 2,458,689 - +0.9 2,458,689 - +1.3 2,458,689 - +3.2 2,458,751 + -0.2 2,458,751 + -0.7 2,458,751 + +0.5 2,458,752 - -0.3 2,458,752 - +0.2 2,458,752 - +2.0 2,458,752 - +2.0 2,458,752 - +1.5 2,458,809 + +0.6 2,461,769 - +2.5 2,461,867 - +0.1 2,461,867 - +0.3 2,461,971 + -2.4 2,461,972 - +1.4 2,461,972 - +2.1 2,462,003 - +1.9 2,462,003 - +1.8 2,462,535 - Psest_2310 0.55 +0.5
Or see this region's nucleotide sequence