Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2282
Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Def Benzalkonium Chloride 0.002 mg/ml |
---|---|---|---|---|---|
remove | |||||
2,429,458 | + | Psest_2281 | 0.18 | +0.9 | |
2,429,478 | + | Psest_2281 | 0.20 | +0.1 | |
2,429,479 | - | Psest_2281 | 0.20 | +0.1 | |
2,429,479 | - | Psest_2281 | 0.20 | -0.1 | |
2,429,776 | + | Psest_2281 | 0.47 | +1.8 | |
2,429,848 | - | Psest_2281 | 0.53 | +0.1 | |
2,429,848 | - | Psest_2281 | 0.53 | +0.1 | |
2,429,890 | + | Psest_2281 | 0.57 | +0.4 | |
2,429,890 | + | Psest_2281 | 0.57 | +0.9 | |
2,429,891 | - | Psest_2281 | 0.57 | -0.0 | |
2,429,891 | - | Psest_2281 | 0.57 | -1.3 | |
2,429,897 | - | Psest_2281 | 0.58 | +0.0 | |
2,429,953 | - | Psest_2281 | 0.63 | -0.3 | |
2,429,953 | - | Psest_2281 | 0.63 | +2.1 | |
2,430,045 | - | Psest_2281 | 0.71 | +1.0 | |
2,430,126 | + | Psest_2281 | 0.79 | -0.7 | |
2,430,126 | + | Psest_2281 | 0.79 | +0.8 | |
2,430,272 | - | -0.2 | |||
2,430,272 | - | +1.1 | |||
2,430,347 | + | -1.0 | |||
2,430,348 | - | -0.2 | |||
2,430,357 | + | +0.5 | |||
2,430,358 | - | +0.1 | |||
2,430,479 | + | Psest_2282 | 0.15 | +1.2 | |
2,430,479 | + | Psest_2282 | 0.15 | -0.1 | |
2,430,722 | - | Psest_2282 | 0.44 | +0.2 | |
2,430,866 | + | Psest_2282 | 0.61 | +1.8 | |
2,430,939 | - | Psest_2282 | 0.69 | +1.1 |
Or see this region's nucleotide sequence