Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2270

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2269 and Psest_2270 overlap by 4 nucleotidesPsest_2270 and Psest_2271 overlap by 29 nucleotidesPsest_2271 and Psest_2272 are separated by 93 nucleotides Psest_2269: Psest_2269 - Dipeptidyl aminopeptidases/acylaminoacyl-peptidases, at 2,418,399 to 2,420,312 _2269 Psest_2270: Psest_2270 - coenzyme PQQ biosynthesis protein E, at 2,420,309 to 2,421,463 _2270 Psest_2271: Psest_2271 - coenzyme PQQ biosynthesis protein PqqD, at 2,421,435 to 2,421,713 _2271 Psest_2272: Psest_2272 - coenzyme PQQ biosynthesis protein C, at 2,421,807 to 2,422,559 _2272 Position (kb) 2420 2421 2422Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2419.441 kb on + strand, within Psest_2269at 2419.484 kb on - strand, within Psest_2269at 2419.572 kb on + strand, within Psest_2269at 2419.573 kb on - strand, within Psest_2269at 2419.781 kb on - strand, within Psest_2269at 2420.066 kb on - strand, within Psest_2269at 2420.071 kb on + strand, within Psest_2269at 2420.168 kb on - strandat 2420.179 kb on + strandat 2420.312 kb on + strandat 2420.313 kb on - strandat 2420.548 kb on - strand, within Psest_2270at 2420.610 kb on - strand, within Psest_2270at 2420.730 kb on + strand, within Psest_2270at 2420.733 kb on + strand, within Psest_2270at 2420.819 kb on + strand, within Psest_2270at 2420.819 kb on + strand, within Psest_2270at 2420.820 kb on - strand, within Psest_2270at 2420.874 kb on + strand, within Psest_2270at 2420.887 kb on + strand, within Psest_2270at 2421.104 kb on - strand, within Psest_2270at 2421.180 kb on + strand, within Psest_2270at 2421.180 kb on + strand, within Psest_2270at 2421.180 kb on + strand, within Psest_2270at 2421.181 kb on - strand, within Psest_2270at 2421.215 kb on + strand, within Psest_2270at 2421.215 kb on + strand, within Psest_2270at 2421.294 kb on - strand, within Psest_2270at 2421.384 kb on + strandat 2421.384 kb on + strandat 2421.385 kb on - strandat 2421.385 kb on - strandat 2421.385 kb on - strandat 2421.630 kb on + strand, within Psest_2271at 2421.631 kb on - strand, within Psest_2271at 2421.631 kb on - strand, within Psest_2271at 2421.631 kb on - strand, within Psest_2271at 2421.631 kb on - strand, within Psest_2271at 2421.631 kb on - strand, within Psest_2271at 2421.731 kb on + strandat 2421.731 kb on + strandat 2421.809 kb on - strandat 2421.857 kb on - strandat 2421.877 kb on + strandat 2421.877 kb on + strandat 2421.877 kb on + strandat 2421.944 kb on + strand, within Psest_2272at 2421.944 kb on + strand, within Psest_2272at 2421.944 kb on + strand, within Psest_2272at 2421.944 kb on + strand, within Psest_2272at 2421.944 kb on + strand, within Psest_2272at 2421.944 kb on + strand, within Psest_2272at 2421.945 kb on - strand, within Psest_2272at 2421.945 kb on - strand, within Psest_2272at 2421.945 kb on - strand, within Psest_2272at 2422.039 kb on + strand, within Psest_2272at 2422.086 kb on - strand, within Psest_2272at 2422.180 kb on + strand, within Psest_2272at 2422.180 kb on + strand, within Psest_2272at 2422.181 kb on - strand, within Psest_2272at 2422.181 kb on - strand, within Psest_2272at 2422.181 kb on - strand, within Psest_2272at 2422.181 kb on - strand, within Psest_2272at 2422.395 kb on - strand, within Psest_2272at 2422.409 kb on - strand, within Psest_2272at 2422.409 kb on - strand, within Psest_2272at 2422.409 kb on - strand, within Psest_2272at 2422.462 kb on + strand, within Psest_2272at 2422.462 kb on + strand, within Psest_2272at 2422.462 kb on + strand, within Psest_2272at 2422.462 kb on + strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272at 2422.463 kb on - strand, within Psest_2272

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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2,419,441 + Psest_2269 0.54 +1.2
2,419,484 - Psest_2269 0.57 +1.4
2,419,572 + Psest_2269 0.61 +2.3
2,419,573 - Psest_2269 0.61 -0.1
2,419,781 - Psest_2269 0.72 +2.1
2,420,066 - Psest_2269 0.87 +0.2
2,420,071 + Psest_2269 0.87 +1.9
2,420,168 - +0.3
2,420,179 + +1.2
2,420,312 + -0.3
2,420,313 - +0.3
2,420,548 - Psest_2270 0.21 +0.9
2,420,610 - Psest_2270 0.26 +1.6
2,420,730 + Psest_2270 0.36 +2.0
2,420,733 + Psest_2270 0.37 +1.4
2,420,819 + Psest_2270 0.44 +1.3
2,420,819 + Psest_2270 0.44 -0.8
2,420,820 - Psest_2270 0.44 +0.7
2,420,874 + Psest_2270 0.49 +0.2
2,420,887 + Psest_2270 0.50 +1.7
2,421,104 - Psest_2270 0.69 +3.1
2,421,180 + Psest_2270 0.75 +1.2
2,421,180 + Psest_2270 0.75 +2.2
2,421,180 + Psest_2270 0.75 +1.6
2,421,181 - Psest_2270 0.75 -0.5
2,421,215 + Psest_2270 0.78 +1.6
2,421,215 + Psest_2270 0.78 +1.7
2,421,294 - Psest_2270 0.85 +1.0
2,421,384 + +2.3
2,421,384 + -0.3
2,421,385 - +2.4
2,421,385 - +0.6
2,421,385 - +1.0
2,421,630 + Psest_2271 0.70 +2.2
2,421,631 - Psest_2271 0.70 +0.9
2,421,631 - Psest_2271 0.70 +0.8
2,421,631 - Psest_2271 0.70 +0.4
2,421,631 - Psest_2271 0.70 +0.6
2,421,631 - Psest_2271 0.70 +0.2
2,421,731 + -1.3
2,421,731 + +1.3
2,421,809 - +0.5
2,421,857 - +1.8
2,421,877 + +1.5
2,421,877 + +2.1
2,421,877 + +1.5
2,421,944 + Psest_2272 0.18 +1.1
2,421,944 + Psest_2272 0.18 +1.1
2,421,944 + Psest_2272 0.18 +1.8
2,421,944 + Psest_2272 0.18 +2.1
2,421,944 + Psest_2272 0.18 +1.2
2,421,944 + Psest_2272 0.18 +2.5
2,421,945 - Psest_2272 0.18 +1.4
2,421,945 - Psest_2272 0.18 +0.0
2,421,945 - Psest_2272 0.18 +0.9
2,422,039 + Psest_2272 0.31 +0.0
2,422,086 - Psest_2272 0.37 +0.5
2,422,180 + Psest_2272 0.50 +0.3
2,422,180 + Psest_2272 0.50 -2.7
2,422,181 - Psest_2272 0.50 +2.1
2,422,181 - Psest_2272 0.50 +0.2
2,422,181 - Psest_2272 0.50 +0.6
2,422,181 - Psest_2272 0.50 +1.4
2,422,395 - Psest_2272 0.78 +1.1
2,422,409 - Psest_2272 0.80 +1.0
2,422,409 - Psest_2272 0.80 +1.9
2,422,409 - Psest_2272 0.80 +1.9
2,422,462 + Psest_2272 0.87 -2.4
2,422,462 + Psest_2272 0.87 +1.9
2,422,462 + Psest_2272 0.87 -0.9
2,422,462 + Psest_2272 0.87 +1.7
2,422,463 - Psest_2272 0.87 +0.7
2,422,463 - Psest_2272 0.87 +1.3
2,422,463 - Psest_2272 0.87 +2.1
2,422,463 - Psest_2272 0.87 +1.3
2,422,463 - Psest_2272 0.87 +1.9
2,422,463 - Psest_2272 0.87 +2.1
2,422,463 - Psest_2272 0.87 +2.2
2,422,463 - Psest_2272 0.87 -0.0
2,422,463 - Psest_2272 0.87 +1.8
2,422,463 - Psest_2272 0.87 +1.8

Or see this region's nucleotide sequence