Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2232 and Psest_2233 are separated by 595 nucleotides Psest_2233 and Psest_2234 are separated by 235 nucleotides
Psest_2232: Psest_2232 - UTP-glucose-1-phosphate uridylyltransferase, at 2,381,791 to 2,382,630
_2232
Psest_2233: Psest_2233 - Methyl-accepting chemotaxis protein, at 2,383,226 to 2,384,845
_2233
Psest_2234: Psest_2234 - oxygen-independent coproporphyrinogen III oxidase, at 2,385,081 to 2,386,469
_2234
Position (kb)
2383
2384
2385 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6 at 2382.380 kb on + strand, within Psest_2232 at 2382.380 kb on + strand, within Psest_2232 at 2382.380 kb on + strand, within Psest_2232 at 2382.380 kb on + strand, within Psest_2232 at 2382.381 kb on - strand, within Psest_2232 at 2382.381 kb on - strand, within Psest_2232 at 2382.381 kb on - strand, within Psest_2232 at 2382.381 kb on - strand, within Psest_2232 at 2382.381 kb on - strand, within Psest_2232 at 2382.381 kb on - strand, within Psest_2232 at 2382.422 kb on + strand, within Psest_2232 at 2382.423 kb on - strand, within Psest_2232 at 2382.723 kb on + strand at 2382.723 kb on + strand at 2382.723 kb on + strand at 2382.724 kb on - strand at 2382.768 kb on - strand at 2382.780 kb on + strand at 2382.804 kb on + strand at 2382.804 kb on + strand at 2382.838 kb on + strand at 2382.839 kb on - strand at 2382.892 kb on + strand at 2383.001 kb on + strand at 2383.001 kb on + strand at 2383.002 kb on - strand at 2383.038 kb on - strand at 2383.039 kb on + strand at 2383.039 kb on + strand at 2383.039 kb on + strand at 2383.039 kb on + strand at 2383.040 kb on - strand at 2383.040 kb on - strand at 2383.040 kb on - strand at 2383.040 kb on - strand at 2383.040 kb on - strand at 2383.054 kb on + strand at 2383.178 kb on + strand at 2383.178 kb on + strand at 2383.179 kb on - strand at 2383.179 kb on - strand at 2383.179 kb on - strand at 2383.209 kb on + strand at 2383.284 kb on + strand at 2383.285 kb on - strand at 2383.394 kb on + strand, within Psest_2233 at 2383.394 kb on + strand, within Psest_2233 at 2383.395 kb on - strand, within Psest_2233 at 2383.482 kb on + strand, within Psest_2233 at 2383.482 kb on + strand, within Psest_2233 at 2383.739 kb on + strand, within Psest_2233 at 2383.739 kb on + strand, within Psest_2233 at 2383.740 kb on - strand, within Psest_2233 at 2383.831 kb on + strand, within Psest_2233 at 2383.831 kb on + strand, within Psest_2233 at 2383.832 kb on - strand, within Psest_2233 at 2383.885 kb on + strand, within Psest_2233 at 2384.520 kb on + strand, within Psest_2233 at 2384.520 kb on + strand, within Psest_2233 at 2384.521 kb on - strand, within Psest_2233 at 2384.521 kb on - strand, within Psest_2233 at 2384.521 kb on - strand, within Psest_2233 at 2385.066 kb on + strand at 2385.066 kb on + strand at 2385.123 kb on + strand at 2385.124 kb on - strand at 2385.124 kb on - strand at 2385.255 kb on + strand, within Psest_2234 at 2385.255 kb on + strand, within Psest_2234 at 2385.255 kb on + strand, within Psest_2234 at 2385.255 kb on + strand, within Psest_2234 at 2385.255 kb on + strand, within Psest_2234 at 2385.256 kb on - strand, within Psest_2234 at 2385.256 kb on - strand, within Psest_2234 at 2385.256 kb on - strand, within Psest_2234 at 2385.256 kb on - strand, within Psest_2234 at 2385.256 kb on - strand, within Psest_2234 at 2385.256 kb on - strand, within Psest_2234 at 2385.256 kb on - strand, within Psest_2234 at 2385.256 kb on - strand, within Psest_2234 at 2385.256 kb on - strand, within Psest_2234 at 2385.291 kb on + strand, within Psest_2234 at 2385.291 kb on + strand, within Psest_2234 at 2385.292 kb on - strand, within Psest_2234 at 2385.343 kb on - strand, within Psest_2234 at 2385.441 kb on + strand, within Psest_2234 at 2385.441 kb on + strand, within Psest_2234 at 2385.441 kb on + strand, within Psest_2234 at 2385.732 kb on + strand, within Psest_2234 at 2385.733 kb on - strand, within Psest_2234 at 2385.733 kb on - strand, within Psest_2234 at 2385.733 kb on - strand, within Psest_2234 at 2385.733 kb on - strand, within Psest_2234 at 2385.733 kb on - strand, within Psest_2234 at 2385.733 kb on - strand, within Psest_2234
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,382,380 + Psest_2232 0.70 +5.6 2,382,380 + Psest_2232 0.70 +5.4 2,382,380 + Psest_2232 0.70 +5.4 2,382,380 + Psest_2232 0.70 +5.9 2,382,381 - Psest_2232 0.70 +5.5 2,382,381 - Psest_2232 0.70 +4.8 2,382,381 - Psest_2232 0.70 +4.6 2,382,381 - Psest_2232 0.70 +4.9 2,382,381 - Psest_2232 0.70 +5.5 2,382,381 - Psest_2232 0.70 +4.9 2,382,422 + Psest_2232 0.75 +5.3 2,382,423 - Psest_2232 0.75 +4.6 2,382,723 + +2.8 2,382,723 + +3.6 2,382,723 + +3.3 2,382,724 - -0.4 2,382,768 - +1.0 2,382,780 + -1.6 2,382,804 + -0.5 2,382,804 + -1.0 2,382,838 + -0.4 2,382,839 - +0.8 2,382,892 + -0.7 2,383,001 + -0.5 2,383,001 + -0.3 2,383,002 - -2.6 2,383,038 - -0.8 2,383,039 + -0.4 2,383,039 + -1.2 2,383,039 + -1.8 2,383,039 + -0.3 2,383,040 - -1.0 2,383,040 - -1.0 2,383,040 - -1.5 2,383,040 - +0.1 2,383,040 - +0.3 2,383,054 + -1.6 2,383,178 + +1.5 2,383,178 + -0.4 2,383,179 - +0.7 2,383,179 - -3.0 2,383,179 - -0.4 2,383,209 + -1.1 2,383,284 + -1.6 2,383,285 - -0.2 2,383,394 + Psest_2233 0.10 -0.2 2,383,394 + Psest_2233 0.10 -1.1 2,383,395 - Psest_2233 0.10 -0.4 2,383,482 + Psest_2233 0.16 +0.2 2,383,482 + Psest_2233 0.16 -0.5 2,383,739 + Psest_2233 0.32 -0.9 2,383,739 + Psest_2233 0.32 +0.5 2,383,740 - Psest_2233 0.32 -2.0 2,383,831 + Psest_2233 0.37 -0.2 2,383,831 + Psest_2233 0.37 -2.5 2,383,832 - Psest_2233 0.37 -0.3 2,383,885 + Psest_2233 0.41 -0.8 2,384,520 + Psest_2233 0.80 +0.5 2,384,520 + Psest_2233 0.80 -0.6 2,384,521 - Psest_2233 0.80 -0.5 2,384,521 - Psest_2233 0.80 -1.3 2,384,521 - Psest_2233 0.80 -1.1 2,385,066 + -0.5 2,385,066 + +0.0 2,385,123 + -1.7 2,385,124 - -1.1 2,385,124 - +0.9 2,385,255 + Psest_2234 0.13 -0.2 2,385,255 + Psest_2234 0.13 -0.8 2,385,255 + Psest_2234 0.13 -3.1 2,385,255 + Psest_2234 0.13 +0.2 2,385,255 + Psest_2234 0.13 -2.5 2,385,256 - Psest_2234 0.13 -0.3 2,385,256 - Psest_2234 0.13 -1.2 2,385,256 - Psest_2234 0.13 -1.0 2,385,256 - Psest_2234 0.13 +0.2 2,385,256 - Psest_2234 0.13 -0.4 2,385,256 - Psest_2234 0.13 -0.1 2,385,256 - Psest_2234 0.13 -0.6 2,385,256 - Psest_2234 0.13 -1.5 2,385,256 - Psest_2234 0.13 -0.8 2,385,291 + Psest_2234 0.15 -0.9 2,385,291 + Psest_2234 0.15 -1.7 2,385,292 - Psest_2234 0.15 +0.6 2,385,343 - Psest_2234 0.19 +1.2 2,385,441 + Psest_2234 0.26 -1.4 2,385,441 + Psest_2234 0.26 -1.5 2,385,441 + Psest_2234 0.26 +0.9 2,385,732 + Psest_2234 0.47 -0.4 2,385,733 - Psest_2234 0.47 +0.9 2,385,733 - Psest_2234 0.47 -0.5 2,385,733 - Psest_2234 0.47 +1.2 2,385,733 - Psest_2234 0.47 -0.4 2,385,733 - Psest_2234 0.47 -0.8 2,385,733 - Psest_2234 0.47 -1.4
Or see this region's nucleotide sequence