Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2180 and Psest_2181 are separated by 91 nucleotides Psest_2181 and Psest_2182 are separated by 175 nucleotides Psest_2182 and Psest_2183 are separated by 217 nucleotides
Psest_2180: Psest_2180 - Curlin associated repeat., at 2,337,019 to 2,338,083
_2180
Psest_2181: Psest_2181 - Protein of unknown function (DUF1615)., at 2,338,175 to 2,339,341
_2181
Psest_2182: Psest_2182 - Protein of unknown function (DUF2790)., at 2,339,517 to 2,339,819
_2182
Psest_2183: Psest_2183 - Transcriptional regulator, at 2,340,037 to 2,340,972
_2183
Position (kb)
2338
2339
2340 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2337.331 kb on + strand, within Psest_2180 at 2337.332 kb on - strand, within Psest_2180 at 2337.332 kb on - strand, within Psest_2180 at 2337.332 kb on - strand, within Psest_2180 at 2337.332 kb on - strand, within Psest_2180 at 2337.332 kb on - strand, within Psest_2180 at 2337.442 kb on - strand, within Psest_2180 at 2337.453 kb on - strand, within Psest_2180 at 2337.464 kb on - strand, within Psest_2180 at 2337.464 kb on - strand, within Psest_2180 at 2337.464 kb on - strand, within Psest_2180 at 2337.467 kb on - strand, within Psest_2180 at 2337.483 kb on + strand, within Psest_2180 at 2337.762 kb on + strand, within Psest_2180 at 2337.944 kb on - strand, within Psest_2180 at 2338.081 kb on + strand at 2338.082 kb on - strand at 2338.177 kb on - strand at 2338.177 kb on - strand at 2338.347 kb on + strand, within Psest_2181 at 2338.348 kb on - strand, within Psest_2181 at 2338.349 kb on + strand, within Psest_2181 at 2338.349 kb on + strand, within Psest_2181 at 2338.350 kb on - strand, within Psest_2181 at 2338.350 kb on - strand, within Psest_2181 at 2338.350 kb on - strand, within Psest_2181 at 2338.350 kb on - strand, within Psest_2181 at 2338.350 kb on - strand, within Psest_2181 at 2338.529 kb on + strand, within Psest_2181 at 2338.530 kb on - strand, within Psest_2181 at 2338.647 kb on + strand, within Psest_2181 at 2338.647 kb on + strand, within Psest_2181 at 2338.647 kb on + strand, within Psest_2181 at 2338.647 kb on + strand, within Psest_2181 at 2338.647 kb on + strand, within Psest_2181 at 2338.647 kb on + strand, within Psest_2181 at 2338.647 kb on + strand, within Psest_2181 at 2338.648 kb on - strand, within Psest_2181 at 2338.648 kb on - strand, within Psest_2181 at 2338.648 kb on - strand, within Psest_2181 at 2338.648 kb on - strand, within Psest_2181 at 2338.648 kb on - strand, within Psest_2181 at 2338.648 kb on - strand, within Psest_2181 at 2338.648 kb on - strand, within Psest_2181 at 2338.648 kb on - strand, within Psest_2181 at 2338.702 kb on - strand, within Psest_2181 at 2338.707 kb on + strand, within Psest_2181 at 2338.838 kb on + strand, within Psest_2181 at 2338.838 kb on + strand, within Psest_2181 at 2338.838 kb on + strand, within Psest_2181 at 2338.838 kb on + strand, within Psest_2181 at 2338.838 kb on + strand, within Psest_2181 at 2338.839 kb on - strand, within Psest_2181 at 2338.839 kb on - strand, within Psest_2181 at 2338.839 kb on - strand, within Psest_2181 at 2338.839 kb on - strand, within Psest_2181 at 2338.839 kb on - strand, within Psest_2181 at 2338.878 kb on + strand, within Psest_2181 at 2338.878 kb on + strand, within Psest_2181 at 2338.878 kb on + strand, within Psest_2181 at 2338.879 kb on - strand, within Psest_2181 at 2338.879 kb on - strand, within Psest_2181 at 2338.960 kb on - strand, within Psest_2181 at 2339.097 kb on + strand, within Psest_2181 at 2339.097 kb on + strand, within Psest_2181 at 2339.097 kb on + strand, within Psest_2181 at 2339.097 kb on + strand, within Psest_2181 at 2339.098 kb on - strand, within Psest_2181 at 2339.098 kb on - strand, within Psest_2181 at 2339.098 kb on - strand, within Psest_2181 at 2339.098 kb on - strand, within Psest_2181 at 2339.380 kb on + strand at 2339.380 kb on + strand at 2339.381 kb on - strand at 2339.551 kb on + strand, within Psest_2182 at 2339.552 kb on - strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.587 kb on + strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.588 kb on - strand, within Psest_2182 at 2339.628 kb on + strand, within Psest_2182 at 2339.628 kb on + strand, within Psest_2182 at 2339.628 kb on + strand, within Psest_2182 at 2339.628 kb on + strand, within Psest_2182 at 2339.628 kb on + strand, within Psest_2182 at 2339.629 kb on - strand, within Psest_2182 at 2339.629 kb on - strand, within Psest_2182 at 2339.671 kb on + strand, within Psest_2182 at 2339.672 kb on - strand, within Psest_2182 at 2339.677 kb on + strand, within Psest_2182 at 2339.702 kb on - strand, within Psest_2182 at 2339.757 kb on + strand, within Psest_2182 at 2339.757 kb on + strand, within Psest_2182 at 2339.758 kb on - strand, within Psest_2182 at 2339.852 kb on + strand at 2339.852 kb on + strand at 2339.852 kb on + strand at 2339.943 kb on - strand at 2340.245 kb on + strand, within Psest_2183 at 2340.245 kb on + strand, within Psest_2183 at 2340.245 kb on + strand, within Psest_2183 at 2340.245 kb on + strand, within Psest_2183 at 2340.245 kb on + strand, within Psest_2183 at 2340.245 kb on + strand, within Psest_2183
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,337,331 + Psest_2180 0.29 -0.0 2,337,332 - Psest_2180 0.29 -0.3 2,337,332 - Psest_2180 0.29 +0.3 2,337,332 - Psest_2180 0.29 -1.2 2,337,332 - Psest_2180 0.29 -2.2 2,337,332 - Psest_2180 0.29 -0.0 2,337,442 - Psest_2180 0.40 -0.3 2,337,453 - Psest_2180 0.41 +0.2 2,337,464 - Psest_2180 0.42 -1.2 2,337,464 - Psest_2180 0.42 -0.5 2,337,464 - Psest_2180 0.42 +0.8 2,337,467 - Psest_2180 0.42 -1.4 2,337,483 + Psest_2180 0.44 -0.6 2,337,762 + Psest_2180 0.70 -0.0 2,337,944 - Psest_2180 0.87 -1.2 2,338,081 + +0.5 2,338,082 - -1.8 2,338,177 - +0.9 2,338,177 - -0.7 2,338,347 + Psest_2181 0.15 -0.7 2,338,348 - Psest_2181 0.15 +1.1 2,338,349 + Psest_2181 0.15 -0.2 2,338,349 + Psest_2181 0.15 -0.5 2,338,350 - Psest_2181 0.15 -1.9 2,338,350 - Psest_2181 0.15 -1.8 2,338,350 - Psest_2181 0.15 -1.9 2,338,350 - Psest_2181 0.15 +0.1 2,338,350 - Psest_2181 0.15 -1.2 2,338,529 + Psest_2181 0.30 -1.4 2,338,530 - Psest_2181 0.30 -0.7 2,338,647 + Psest_2181 0.40 -0.1 2,338,647 + Psest_2181 0.40 -0.9 2,338,647 + Psest_2181 0.40 -0.1 2,338,647 + Psest_2181 0.40 -0.9 2,338,647 + Psest_2181 0.40 -0.1 2,338,647 + Psest_2181 0.40 -0.3 2,338,647 + Psest_2181 0.40 -1.1 2,338,648 - Psest_2181 0.41 -0.8 2,338,648 - Psest_2181 0.41 -0.4 2,338,648 - Psest_2181 0.41 -1.1 2,338,648 - Psest_2181 0.41 -0.9 2,338,648 - Psest_2181 0.41 -0.6 2,338,648 - Psest_2181 0.41 +2.3 2,338,648 - Psest_2181 0.41 +0.3 2,338,648 - Psest_2181 0.41 -1.2 2,338,702 - Psest_2181 0.45 -2.3 2,338,707 + Psest_2181 0.46 -0.5 2,338,838 + Psest_2181 0.57 -0.4 2,338,838 + Psest_2181 0.57 -1.0 2,338,838 + Psest_2181 0.57 +0.4 2,338,838 + Psest_2181 0.57 +0.1 2,338,838 + Psest_2181 0.57 -0.7 2,338,839 - Psest_2181 0.57 +0.1 2,338,839 - Psest_2181 0.57 -0.9 2,338,839 - Psest_2181 0.57 +0.4 2,338,839 - Psest_2181 0.57 +0.3 2,338,839 - Psest_2181 0.57 -0.1 2,338,878 + Psest_2181 0.60 +0.4 2,338,878 + Psest_2181 0.60 -0.3 2,338,878 + Psest_2181 0.60 +0.7 2,338,879 - Psest_2181 0.60 +0.2 2,338,879 - Psest_2181 0.60 -0.2 2,338,960 - Psest_2181 0.67 +0.1 2,339,097 + Psest_2181 0.79 +0.7 2,339,097 + Psest_2181 0.79 +0.2 2,339,097 + Psest_2181 0.79 +0.1 2,339,097 + Psest_2181 0.79 +0.5 2,339,098 - Psest_2181 0.79 -0.7 2,339,098 - Psest_2181 0.79 -1.7 2,339,098 - Psest_2181 0.79 -1.5 2,339,098 - Psest_2181 0.79 -0.5 2,339,380 + -2.2 2,339,380 + -0.7 2,339,381 - -1.7 2,339,551 + Psest_2182 0.11 -1.5 2,339,552 - Psest_2182 0.12 -0.9 2,339,587 + Psest_2182 0.23 +0.1 2,339,587 + Psest_2182 0.23 -2.1 2,339,587 + Psest_2182 0.23 -0.7 2,339,587 + Psest_2182 0.23 -1.6 2,339,587 + +1.1 2,339,587 + Psest_2182 0.23 -3.0 2,339,587 + Psest_2182 0.23 -1.4 2,339,587 + Psest_2182 0.23 +0.5 2,339,587 + Psest_2182 0.23 +0.4 2,339,587 + Psest_2182 0.23 -0.9 2,339,587 + Psest_2182 0.23 -1.5 2,339,587 + Psest_2182 0.23 -0.5 2,339,588 - Psest_2182 0.23 +0.7 2,339,588 - Psest_2182 0.23 -1.1 2,339,588 - Psest_2182 0.23 -0.8 2,339,588 - Psest_2182 0.23 -1.1 2,339,588 - Psest_2182 0.23 +0.1 2,339,588 - Psest_2182 0.23 -1.9 2,339,588 - Psest_2182 0.23 +1.1 2,339,588 - Psest_2182 0.23 -2.9 2,339,588 - Psest_2182 0.23 -1.1 2,339,588 - Psest_2182 0.23 +0.1 2,339,588 - Psest_2182 0.23 -0.9 2,339,628 + Psest_2182 0.37 +1.0 2,339,628 + Psest_2182 0.37 -2.2 2,339,628 + Psest_2182 0.37 +0.3 2,339,628 + Psest_2182 0.37 -1.5 2,339,628 + Psest_2182 0.37 -1.1 2,339,629 - Psest_2182 0.37 +1.1 2,339,629 - Psest_2182 0.37 -0.5 2,339,671 + Psest_2182 0.51 -0.3 2,339,672 - Psest_2182 0.51 +0.3 2,339,677 + Psest_2182 0.53 -0.7 2,339,702 - Psest_2182 0.61 +0.1 2,339,757 + Psest_2182 0.79 -1.4 2,339,757 + Psest_2182 0.79 -1.3 2,339,758 - Psest_2182 0.80 +0.8 2,339,852 + -2.2 2,339,852 + -0.7 2,339,852 + +0.5 2,339,943 - -0.9 2,340,245 + Psest_2183 0.22 -0.1 2,340,245 + Psest_2183 0.22 -1.2 2,340,245 + Psest_2183 0.22 -0.5 2,340,245 + Psest_2183 0.22 +0.0 2,340,245 + Psest_2183 0.22 +1.5 2,340,245 + Psest_2183 0.22 -0.1
Or see this region's nucleotide sequence