Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2175

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2174 and Psest_2175 are separated by 236 nucleotidesPsest_2175 and Psest_2176 are separated by 102 nucleotidesPsest_2176 and Psest_2177 are separated by 11 nucleotidesPsest_2177 and Psest_2178 are separated by 270 nucleotides Psest_2174: Psest_2174 - Small-conductance mechanosensitive channel, at 2,331,173 to 2,332,252 _2174 Psest_2175: Psest_2175 - Uncharacterized protein conserved in bacteria, at 2,332,489 to 2,333,019 _2175 Psest_2176: Psest_2176 - Predicted membrane protein, at 2,333,122 to 2,333,406 _2176 Psest_2177: Psest_2177 - Protein of unknown function (DUF1652)., at 2,333,418 to 2,333,693 _2177 Psest_2178: Psest_2178 - hypothetical protein, at 2,333,964 to 2,334,260 _2178 Position (kb) 2332 2333 2334Strain fitness (log2 ratio) -3 -2 -1 0 1at 2331.515 kb on + strand, within Psest_2174at 2331.516 kb on - strand, within Psest_2174at 2331.516 kb on - strand, within Psest_2174at 2331.577 kb on - strand, within Psest_2174at 2331.577 kb on - strand, within Psest_2174at 2331.577 kb on - strand, within Psest_2174at 2331.577 kb on - strand, within Psest_2174at 2331.577 kb on - strand, within Psest_2174at 2331.627 kb on + strand, within Psest_2174at 2331.627 kb on + strand, within Psest_2174at 2331.627 kb on + strand, within Psest_2174at 2331.627 kb on + strand, within Psest_2174at 2331.627 kb on + strand, within Psest_2174at 2331.627 kb on + strand, within Psest_2174at 2331.627 kb on + strand, within Psest_2174at 2331.627 kb on + strand, within Psest_2174at 2331.627 kb on + strand, within Psest_2174at 2331.627 kb on + strand, within Psest_2174at 2331.627 kb on + strand, within Psest_2174at 2331.627 kb on + strand, within Psest_2174at 2331.627 kb on + strand, within Psest_2174at 2331.628 kb on - strand, within Psest_2174at 2331.628 kb on - strand, within Psest_2174at 2331.628 kb on - strand, within Psest_2174at 2331.628 kb on - strand, within Psest_2174at 2331.628 kb on - strand, within Psest_2174at 2331.628 kb on - strand, within Psest_2174at 2331.628 kb on - strand, within Psest_2174at 2331.628 kb on - strand, within Psest_2174at 2331.628 kb on - strand, within Psest_2174at 2332.031 kb on - strand, within Psest_2174at 2332.052 kb on + strand, within Psest_2174at 2332.080 kb on - strand, within Psest_2174at 2332.106 kb on + strand, within Psest_2174at 2332.106 kb on + strand, within Psest_2174at 2332.106 kb on + strand, within Psest_2174at 2332.107 kb on - strand, within Psest_2174at 2332.107 kb on - strand, within Psest_2174at 2332.107 kb on - strand, within Psest_2174at 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.269 kb on + strandat 2332.270 kb on - strandat 2332.270 kb on - strandat 2332.270 kb on - strandat 2332.270 kb on - strandat 2332.270 kb on - strandat 2332.270 kb on - strandat 2332.270 kb on - strandat 2332.270 kb on - strandat 2332.454 kb on - strandat 2332.616 kb on - strand, within Psest_2175at 2332.616 kb on - strand, within Psest_2175at 2332.814 kb on - strand, within Psest_2175at 2332.814 kb on - strand, within Psest_2175at 2332.817 kb on + strand, within Psest_2175at 2332.843 kb on + strand, within Psest_2175at 2332.843 kb on + strand, within Psest_2175at 2332.843 kb on + strand, within Psest_2175at 2332.843 kb on + strand, within Psest_2175at 2332.843 kb on + strand, within Psest_2175at 2332.844 kb on - strand, within Psest_2175at 2332.844 kb on - strand, within Psest_2175at 2332.844 kb on - strand, within Psest_2175at 2332.898 kb on + strand, within Psest_2175at 2332.898 kb on + strand, within Psest_2175at 2332.898 kb on + strand, within Psest_2175at 2332.898 kb on + strand, within Psest_2175at 2332.898 kb on + strand, within Psest_2175at 2332.898 kb on + strand, within Psest_2175at 2332.899 kb on - strand, within Psest_2175at 2332.975 kb on + strandat 2332.975 kb on + strandat 2333.211 kb on + strand, within Psest_2176at 2333.211 kb on + strand, within Psest_2176at 2333.211 kb on + strand, within Psest_2176at 2333.211 kb on + strand, within Psest_2176at 2333.219 kb on + strand, within Psest_2176at 2333.220 kb on - strand, within Psest_2176at 2333.220 kb on - strand, within Psest_2176at 2333.269 kb on + strand, within Psest_2176at 2333.269 kb on + strand, within Psest_2176at 2333.269 kb on + strand, within Psest_2176at 2333.270 kb on - strand, within Psest_2176at 2333.353 kb on + strand, within Psest_2176at 2333.353 kb on + strand, within Psest_2176at 2333.354 kb on - strand, within Psest_2176at 2333.354 kb on - strand, within Psest_2176at 2333.354 kb on - strand, within Psest_2176at 2333.354 kb on - strand, within Psest_2176at 2333.354 kb on - strand, within Psest_2176at 2333.354 kb on - strand, within Psest_2176at 2333.537 kb on - strand, within Psest_2177at 2333.644 kb on + strand, within Psest_2177at 2333.644 kb on + strand, within Psest_2177at 2333.645 kb on - strand, within Psest_2177at 2333.645 kb on - strand, within Psest_2177at 2333.645 kb on - strand, within Psest_2177at 2333.645 kb on - strand, within Psest_2177at 2333.645 kb on - strand, within Psest_2177at 2333.645 kb on - strand, within Psest_2177at 2333.687 kb on + strandat 2333.693 kb on + strandat 2333.693 kb on + strandat 2333.693 kb on + strandat 2333.694 kb on - strandat 2333.694 kb on - strandat 2333.709 kb on - strandat 2333.776 kb on - strandat 2333.795 kb on + strandat 2333.795 kb on + strandat 2333.795 kb on + strandat 2333.796 kb on - strandat 2333.807 kb on + strandat 2333.808 kb on - strandat 2333.808 kb on - strandat 2333.843 kb on + strandat 2333.844 kb on - strandat 2333.916 kb on - strandat 2333.937 kb on + strandat 2333.937 kb on + strandat 2333.937 kb on + strandat 2333.937 kb on + strandat 2333.937 kb on + strandat 2333.937 kb on + strandat 2333.937 kb on + strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.938 kb on - strandat 2333.941 kb on + strandat 2333.941 kb on + strandat 2333.942 kb on - strandat 2333.942 kb on - strandat 2333.942 kb on - strandat 2333.944 kb on + strandat 2333.944 kb on + strandat 2333.944 kb on + strandat 2333.944 kb on + strandat 2333.945 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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2,331,515 + Psest_2174 0.32 +0.1
2,331,516 - Psest_2174 0.32 -2.9
2,331,516 - Psest_2174 0.32 -2.9
2,331,577 - Psest_2174 0.37 -2.2
2,331,577 - Psest_2174 0.37 -1.9
2,331,577 - Psest_2174 0.37 +0.4
2,331,577 - Psest_2174 0.37 +0.0
2,331,577 - Psest_2174 0.37 -0.8
2,331,627 + Psest_2174 0.42 -1.2
2,331,627 + Psest_2174 0.42 -2.2
2,331,627 + Psest_2174 0.42 -1.0
2,331,627 + Psest_2174 0.42 -1.2
2,331,627 + Psest_2174 0.42 -0.1
2,331,627 + Psest_2174 0.42 -0.8
2,331,627 + Psest_2174 0.42 +0.4
2,331,627 + Psest_2174 0.42 -1.2
2,331,627 + Psest_2174 0.42 +0.2
2,331,627 + Psest_2174 0.42 -0.3
2,331,627 + Psest_2174 0.42 -1.3
2,331,627 + Psest_2174 0.42 -3.0
2,331,627 + Psest_2174 0.42 -1.2
2,331,628 - Psest_2174 0.42 -1.5
2,331,628 - Psest_2174 0.42 -0.3
2,331,628 - Psest_2174 0.42 -1.6
2,331,628 - Psest_2174 0.42 -1.8
2,331,628 - Psest_2174 0.42 -0.9
2,331,628 - Psest_2174 0.42 +0.9
2,331,628 - Psest_2174 0.42 +0.9
2,331,628 - Psest_2174 0.42 +0.2
2,331,628 - Psest_2174 0.42 -2.0
2,332,031 - Psest_2174 0.79 -1.2
2,332,052 + Psest_2174 0.81 +0.3
2,332,080 - Psest_2174 0.84 -0.8
2,332,106 + Psest_2174 0.86 +0.9
2,332,106 + Psest_2174 0.86 -0.5
2,332,106 + Psest_2174 0.86 -0.7
2,332,107 - Psest_2174 0.86 -0.9
2,332,107 - Psest_2174 0.86 -0.5
2,332,107 - Psest_2174 0.86 -1.1
2,332,269 + -0.1
2,332,269 + -1.2
2,332,269 + -0.5
2,332,269 + -0.3
2,332,269 + +0.9
2,332,269 + -0.7
2,332,269 + +0.2
2,332,269 + -0.7
2,332,269 + -0.7
2,332,269 + +0.1
2,332,269 + -0.3
2,332,269 + -0.6
2,332,269 + -0.8
2,332,270 - -0.9
2,332,270 - +0.9
2,332,270 - +0.4
2,332,270 - +0.1
2,332,270 - +0.4
2,332,270 - -1.0
2,332,270 - +0.1
2,332,270 - +0.5
2,332,454 - -2.1
2,332,616 - Psest_2175 0.24 -1.5
2,332,616 - Psest_2175 0.24 -1.9
2,332,814 - Psest_2175 0.61 -1.9
2,332,814 - Psest_2175 0.61 -1.4
2,332,817 + Psest_2175 0.62 -0.6
2,332,843 + Psest_2175 0.67 +1.1
2,332,843 + Psest_2175 0.67 -2.5
2,332,843 + Psest_2175 0.67 -0.2
2,332,843 + Psest_2175 0.67 -0.1
2,332,843 + Psest_2175 0.67 -1.0
2,332,844 - Psest_2175 0.67 -1.1
2,332,844 - Psest_2175 0.67 -1.6
2,332,844 - Psest_2175 0.67 -0.6
2,332,898 + Psest_2175 0.77 +0.4
2,332,898 + Psest_2175 0.77 -0.4
2,332,898 + Psest_2175 0.77 -0.3
2,332,898 + Psest_2175 0.77 -1.5
2,332,898 + Psest_2175 0.77 +0.7
2,332,898 + Psest_2175 0.77 -0.6
2,332,899 - Psest_2175 0.77 +0.8
2,332,975 + -0.3
2,332,975 + +0.1
2,333,211 + Psest_2176 0.31 +0.8
2,333,211 + Psest_2176 0.31 -0.4
2,333,211 + Psest_2176 0.31 +0.7
2,333,211 + Psest_2176 0.31 -0.8
2,333,219 + Psest_2176 0.34 +1.5
2,333,220 - Psest_2176 0.34 +1.3
2,333,220 - Psest_2176 0.34 -1.9
2,333,269 + Psest_2176 0.52 +1.0
2,333,269 + Psest_2176 0.52 +0.1
2,333,269 + Psest_2176 0.52 -1.0
2,333,270 - Psest_2176 0.52 -2.6
2,333,353 + Psest_2176 0.81 -0.1
2,333,353 + Psest_2176 0.81 -0.1
2,333,354 - Psest_2176 0.81 -0.5
2,333,354 - Psest_2176 0.81 -0.9
2,333,354 - Psest_2176 0.81 -0.6
2,333,354 - Psest_2176 0.81 -1.1
2,333,354 - Psest_2176 0.81 -1.8
2,333,354 - Psest_2176 0.81 +1.0
2,333,537 - Psest_2177 0.43 -1.8
2,333,644 + Psest_2177 0.82 -0.5
2,333,644 + Psest_2177 0.82 -0.9
2,333,645 - Psest_2177 0.82 +0.5
2,333,645 - Psest_2177 0.82 +0.1
2,333,645 - Psest_2177 0.82 -0.7
2,333,645 - Psest_2177 0.82 -2.3
2,333,645 - Psest_2177 0.82 -0.6
2,333,645 - Psest_2177 0.82 +0.3
2,333,687 + -2.5
2,333,693 + -2.2
2,333,693 + -0.5
2,333,693 + -0.9
2,333,694 - -1.2
2,333,694 - -1.1
2,333,709 - +0.8
2,333,776 - +0.4
2,333,795 + -1.3
2,333,795 + -0.8
2,333,795 + -1.6
2,333,796 - -1.7
2,333,807 + +1.1
2,333,808 - -2.4
2,333,808 - +0.7
2,333,843 + +0.1
2,333,844 - -1.7
2,333,916 - +1.4
2,333,937 + -2.6
2,333,937 + -1.1
2,333,937 + -0.7
2,333,937 + -0.0
2,333,937 + +0.7
2,333,937 + -0.3
2,333,937 + +0.8
2,333,938 - -1.2
2,333,938 - -0.1
2,333,938 - +0.1
2,333,938 - -1.1
2,333,938 - +0.0
2,333,938 - +0.1
2,333,938 - -0.8
2,333,938 - -0.9
2,333,938 - -1.5
2,333,938 - +0.3
2,333,941 + -0.9
2,333,941 + -1.8
2,333,942 - -2.7
2,333,942 - -1.0
2,333,942 - -0.4
2,333,944 + +0.3
2,333,944 + -0.2
2,333,944 + -0.1
2,333,944 + -1.5
2,333,945 - -1.0

Or see this region's nucleotide sequence