Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2164 and Psest_2165 are separated by 27 nucleotides Psest_2165 and Psest_2166 are separated by 16 nucleotides Psest_2166 and Psest_2167 are separated by 279 nucleotides
Psest_2164: Psest_2164 - Uncharacterized conserved protein, at 2,316,736 to 2,317,560
_2164
Psest_2165: Psest_2165 - Cytochrome B561, at 2,317,588 to 2,318,427
_2165
Psest_2166: Psest_2166 - Membrane proteins related to metalloendopeptidases, at 2,318,444 to 2,319,292
_2166
Psest_2167: Psest_2167 - glycogen debranching enzyme GlgX, at 2,319,572 to 2,321,722
_2167
Position (kb)
2318
2319
2320 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2317.591 kb on + strand at 2317.591 kb on + strand at 2317.889 kb on + strand, within Psest_2165 at 2318.185 kb on + strand, within Psest_2165 at 2318.185 kb on + strand, within Psest_2165 at 2318.185 kb on + strand, within Psest_2165 at 2318.185 kb on + strand, within Psest_2165 at 2318.185 kb on + strand, within Psest_2165 at 2318.186 kb on - strand, within Psest_2165 at 2318.225 kb on - strand, within Psest_2165 at 2318.273 kb on + strand, within Psest_2165 at 2318.567 kb on - strand, within Psest_2166 at 2318.697 kb on + strand, within Psest_2166 at 2318.697 kb on + strand, within Psest_2166 at 2318.697 kb on + strand, within Psest_2166 at 2318.697 kb on + strand, within Psest_2166 at 2318.697 kb on + strand, within Psest_2166 at 2318.698 kb on - strand, within Psest_2166 at 2318.698 kb on - strand, within Psest_2166 at 2318.698 kb on - strand, within Psest_2166 at 2318.698 kb on - strand, within Psest_2166 at 2318.863 kb on + strand, within Psest_2166 at 2318.863 kb on + strand, within Psest_2166 at 2318.864 kb on - strand, within Psest_2166 at 2318.895 kb on + strand, within Psest_2166 at 2318.941 kb on - strand, within Psest_2166 at 2318.952 kb on + strand, within Psest_2166 at 2318.952 kb on + strand, within Psest_2166 at 2318.953 kb on - strand, within Psest_2166 at 2319.211 kb on + strand at 2319.267 kb on + strand at 2319.271 kb on + strand at 2319.272 kb on - strand at 2319.272 kb on - strand at 2319.696 kb on + strand at 2319.696 kb on + strand at 2319.696 kb on + strand at 2319.697 kb on - strand at 2319.697 kb on - strand at 2319.701 kb on - strand at 2319.701 kb on - strand at 2320.014 kb on + strand, within Psest_2167 at 2320.015 kb on - strand, within Psest_2167 at 2320.069 kb on - strand, within Psest_2167 at 2320.069 kb on - strand, within Psest_2167 at 2320.069 kb on - strand, within Psest_2167 at 2320.094 kb on - strand, within Psest_2167
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,317,591 + -0.0 2,317,591 + -1.5 2,317,889 + Psest_2165 0.36 +0.9 2,318,185 + Psest_2165 0.71 -1.5 2,318,185 + Psest_2165 0.71 +0.1 2,318,185 + Psest_2165 0.71 -0.7 2,318,185 + Psest_2165 0.71 +0.5 2,318,185 + Psest_2165 0.71 -0.9 2,318,186 - Psest_2165 0.71 -0.5 2,318,225 - Psest_2165 0.76 +0.5 2,318,273 + Psest_2165 0.82 +1.1 2,318,567 - Psest_2166 0.14 -2.6 2,318,697 + Psest_2166 0.30 -1.7 2,318,697 + Psest_2166 0.30 -0.3 2,318,697 + Psest_2166 0.30 -1.6 2,318,697 + Psest_2166 0.30 -1.3 2,318,697 + Psest_2166 0.30 +1.7 2,318,698 - Psest_2166 0.30 -2.2 2,318,698 - Psest_2166 0.30 -1.2 2,318,698 - Psest_2166 0.30 -1.9 2,318,698 - Psest_2166 0.30 +1.1 2,318,863 + Psest_2166 0.49 -1.9 2,318,863 + Psest_2166 0.49 +0.6 2,318,864 - Psest_2166 0.49 -1.4 2,318,895 + Psest_2166 0.53 +0.7 2,318,941 - Psest_2166 0.59 -0.5 2,318,952 + Psest_2166 0.60 -0.5 2,318,952 + Psest_2166 0.60 -0.2 2,318,953 - Psest_2166 0.60 -1.1 2,319,211 + +0.3 2,319,267 + +0.6 2,319,271 + +1.9 2,319,272 - -1.1 2,319,272 - -1.3 2,319,696 + -0.9 2,319,696 + -1.1 2,319,696 + -0.7 2,319,697 - +0.0 2,319,697 - +0.6 2,319,701 - -0.2 2,319,701 - +1.3 2,320,014 + Psest_2167 0.21 -0.5 2,320,015 - Psest_2167 0.21 -0.3 2,320,069 - Psest_2167 0.23 +0.0 2,320,069 - Psest_2167 0.23 -0.7 2,320,069 - Psest_2167 0.23 -0.1 2,320,094 - Psest_2167 0.24 -0.4
Or see this region's nucleotide sequence