Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2154 and Psest_2155 are separated by 10 nucleotides Psest_2155 and Psest_2156 are separated by 347 nucleotides Psest_2156 and Psest_2157 are separated by 135 nucleotides
Psest_2154: Psest_2154 - formate dehydrogenase accessory protein FdhE, at 2,301,947 to 2,302,894
_2154
Psest_2155: Psest_2155 - hypothetical protein, at 2,302,905 to 2,303,069
_2155
Psest_2156: Psest_2156 - Glycosidases, at 2,303,417 to 2,305,429
_2156
Psest_2157: Psest_2157 - trehalose synthase, at 2,305,565 to 2,308,891
_2157
Position (kb)
2303
2304
2305
2306 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2302.673 kb on + strand, within Psest_2154 at 2302.673 kb on + strand, within Psest_2154 at 2302.673 kb on + strand, within Psest_2154 at 2302.748 kb on + strand, within Psest_2154 at 2302.748 kb on + strand, within Psest_2154 at 2302.749 kb on - strand, within Psest_2154 at 2302.749 kb on - strand, within Psest_2154 at 2302.749 kb on - strand, within Psest_2154 at 2302.865 kb on + strand at 2302.865 kb on + strand at 2302.866 kb on - strand at 2302.866 kb on - strand at 2302.893 kb on - strand at 2303.662 kb on - strand, within Psest_2156 at 2304.161 kb on + strand, within Psest_2156 at 2304.162 kb on - strand, within Psest_2156 at 2304.455 kb on + strand, within Psest_2156 at 2304.456 kb on - strand, within Psest_2156 at 2304.479 kb on + strand, within Psest_2156 at 2304.506 kb on + strand, within Psest_2156 at 2304.507 kb on - strand, within Psest_2156 at 2304.507 kb on - strand, within Psest_2156 at 2304.507 kb on - strand, within Psest_2156 at 2304.507 kb on - strand, within Psest_2156 at 2304.507 kb on - strand, within Psest_2156 at 2304.743 kb on + strand, within Psest_2156 at 2304.743 kb on + strand, within Psest_2156 at 2304.743 kb on + strand, within Psest_2156 at 2304.743 kb on + strand, within Psest_2156 at 2304.743 kb on + strand, within Psest_2156 at 2304.743 kb on + strand, within Psest_2156 at 2304.744 kb on - strand, within Psest_2156 at 2304.744 kb on - strand, within Psest_2156 at 2304.749 kb on + strand, within Psest_2156 at 2304.749 kb on + strand, within Psest_2156 at 2304.750 kb on - strand, within Psest_2156 at 2304.750 kb on - strand, within Psest_2156 at 2304.750 kb on - strand, within Psest_2156 at 2304.780 kb on + strand, within Psest_2156 at 2304.781 kb on - strand, within Psest_2156 at 2304.950 kb on + strand, within Psest_2156 at 2304.950 kb on + strand, within Psest_2156 at 2304.950 kb on + strand, within Psest_2156 at 2304.951 kb on - strand, within Psest_2156 at 2304.951 kb on - strand, within Psest_2156 at 2305.002 kb on - strand, within Psest_2156 at 2305.136 kb on + strand, within Psest_2156 at 2305.136 kb on + strand, within Psest_2156 at 2305.136 kb on + strand, within Psest_2156 at 2305.137 kb on - strand, within Psest_2156 at 2305.137 kb on - strand, within Psest_2156 at 2305.137 kb on - strand, within Psest_2156 at 2305.137 kb on - strand, within Psest_2156 at 2305.422 kb on + strand at 2305.427 kb on + strand at 2305.427 kb on + strand at 2305.427 kb on + strand at 2305.613 kb on + strand at 2305.631 kb on + strand at 2305.631 kb on + strand at 2305.632 kb on - strand at 2305.655 kb on + strand at 2305.655 kb on + strand at 2305.656 kb on - strand at 2305.656 kb on - strand at 2305.656 kb on - strand at 2305.656 kb on - strand at 2305.656 kb on - strand at 2305.712 kb on + strand at 2305.712 kb on + strand at 2305.713 kb on - strand at 2305.713 kb on - strand at 2305.758 kb on - strand at 2305.976 kb on + strand, within Psest_2157 at 2305.977 kb on - strand, within Psest_2157 at 2305.977 kb on - strand, within Psest_2157 at 2305.977 kb on - strand, within Psest_2157 at 2305.977 kb on - strand, within Psest_2157 at 2305.977 kb on - strand, within Psest_2157 at 2306.004 kb on - strand, within Psest_2157 at 2306.075 kb on + strand, within Psest_2157 at 2306.076 kb on - strand, within Psest_2157 at 2306.093 kb on + strand, within Psest_2157 at 2306.094 kb on - strand, within Psest_2157 at 2306.094 kb on - strand, within Psest_2157 at 2306.094 kb on - strand, within Psest_2157 at 2306.211 kb on - strand, within Psest_2157 at 2306.357 kb on + strand, within Psest_2157 at 2306.357 kb on + strand, within Psest_2157 at 2306.357 kb on + strand, within Psest_2157
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,302,673 + Psest_2154 0.77 +0.3 2,302,673 + Psest_2154 0.77 -0.0 2,302,673 + Psest_2154 0.77 +1.1 2,302,748 + Psest_2154 0.84 -0.5 2,302,748 + Psest_2154 0.84 +1.1 2,302,749 - Psest_2154 0.85 +0.9 2,302,749 - Psest_2154 0.85 -1.7 2,302,749 - Psest_2154 0.85 +1.7 2,302,865 + +0.3 2,302,865 + +0.0 2,302,866 - +3.1 2,302,866 - -1.5 2,302,893 - +1.1 2,303,662 - Psest_2156 0.12 +0.9 2,304,161 + Psest_2156 0.37 -1.1 2,304,162 - Psest_2156 0.37 -1.2 2,304,455 + Psest_2156 0.52 +0.3 2,304,456 - Psest_2156 0.52 -0.5 2,304,479 + Psest_2156 0.53 -1.7 2,304,506 + Psest_2156 0.54 -0.8 2,304,507 - Psest_2156 0.54 -0.9 2,304,507 - Psest_2156 0.54 +0.2 2,304,507 - Psest_2156 0.54 -0.6 2,304,507 - Psest_2156 0.54 -0.7 2,304,507 - Psest_2156 0.54 -1.5 2,304,743 + Psest_2156 0.66 +0.7 2,304,743 + Psest_2156 0.66 -0.5 2,304,743 + Psest_2156 0.66 -2.5 2,304,743 + Psest_2156 0.66 -1.2 2,304,743 + Psest_2156 0.66 +0.5 2,304,743 + Psest_2156 0.66 -0.9 2,304,744 - Psest_2156 0.66 -1.7 2,304,744 - Psest_2156 0.66 -3.5 2,304,749 + Psest_2156 0.66 +1.1 2,304,749 + Psest_2156 0.66 +0.5 2,304,750 - Psest_2156 0.66 -1.2 2,304,750 - Psest_2156 0.66 +2.1 2,304,750 - Psest_2156 0.66 -0.6 2,304,780 + Psest_2156 0.68 +1.1 2,304,781 - Psest_2156 0.68 -0.2 2,304,950 + Psest_2156 0.76 +0.5 2,304,950 + Psest_2156 0.76 -1.2 2,304,950 + Psest_2156 0.76 +0.5 2,304,951 - Psest_2156 0.76 -0.5 2,304,951 - Psest_2156 0.76 -1.9 2,305,002 - Psest_2156 0.79 -0.3 2,305,136 + Psest_2156 0.85 -0.7 2,305,136 + Psest_2156 0.85 +1.4 2,305,136 + Psest_2156 0.85 -0.7 2,305,137 - Psest_2156 0.85 +3.1 2,305,137 - Psest_2156 0.85 -0.1 2,305,137 - Psest_2156 0.85 +0.3 2,305,137 - Psest_2156 0.85 -0.2 2,305,422 + -1.0 2,305,427 + -0.5 2,305,427 + +0.7 2,305,427 + -0.4 2,305,613 + +0.3 2,305,631 + -1.1 2,305,631 + -1.6 2,305,632 - -0.4 2,305,655 + +1.1 2,305,655 + -1.0 2,305,656 - -0.1 2,305,656 - -0.8 2,305,656 - -0.5 2,305,656 - +0.5 2,305,656 - -0.2 2,305,712 + -0.3 2,305,712 + -1.1 2,305,713 - +0.7 2,305,713 - -1.2 2,305,758 - -1.0 2,305,976 + Psest_2157 0.12 -1.1 2,305,977 - Psest_2157 0.12 -2.3 2,305,977 - Psest_2157 0.12 +0.8 2,305,977 - Psest_2157 0.12 -0.5 2,305,977 - Psest_2157 0.12 +0.0 2,305,977 - Psest_2157 0.12 -0.2 2,306,004 - Psest_2157 0.13 -0.5 2,306,075 + Psest_2157 0.15 +1.1 2,306,076 - Psest_2157 0.15 -0.8 2,306,093 + Psest_2157 0.16 -0.5 2,306,094 - Psest_2157 0.16 -0.3 2,306,094 - Psest_2157 0.16 -0.9 2,306,094 - Psest_2157 0.16 +0.1 2,306,211 - Psest_2157 0.19 -0.5 2,306,357 + Psest_2157 0.24 +0.4 2,306,357 + Psest_2157 0.24 -1.7 2,306,357 + Psest_2157 0.24 -0.8
Or see this region's nucleotide sequence