Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2121

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_2120 and Psest_2121 are separated by 51 nucleotidesPsest_2121 and Psest_2122 are separated by 8 nucleotidesPsest_2122 and Psest_2123 are separated by 176 nucleotides Psest_2120: Psest_2120 - Transcriptional regulator, at 2,251,541 to 2,252,449 _2120 Psest_2121: Psest_2121 - Predicted ATPase, at 2,252,501 to 2,253,610 _2121 Psest_2122: Psest_2122 - Parvulin-like peptidyl-prolyl isomerase, at 2,253,619 to 2,253,897 _2122 Psest_2123: Psest_2123 - fusion of gluconokinase (EC 2.7.1.12) and the small permease component of the D-gluconate TRAP transporter (from data), at 2,254,074 to 2,255,204 _2123 Position (kb) 2252 2253 2254Strain fitness (log2 ratio) -2 -1 0 1 2at 2251.555 kb on + strandat 2251.618 kb on + strandat 2251.618 kb on + strandat 2251.618 kb on + strandat 2251.618 kb on + strandat 2251.619 kb on - strandat 2251.619 kb on - strandat 2251.619 kb on - strandat 2251.897 kb on + strand, within Psest_2120at 2251.898 kb on - strand, within Psest_2120at 2251.898 kb on - strand, within Psest_2120at 2252.201 kb on - strand, within Psest_2120at 2252.216 kb on + strand, within Psest_2120at 2252.217 kb on - strand, within Psest_2120at 2252.648 kb on + strandat 2252.648 kb on + strand, within Psest_2121at 2252.649 kb on - strand, within Psest_2121at 2252.649 kb on - strand, within Psest_2121at 2252.820 kb on + strand, within Psest_2121at 2252.820 kb on + strand, within Psest_2121at 2252.820 kb on + strand, within Psest_2121at 2252.820 kb on + strand, within Psest_2121at 2252.820 kb on + strand, within Psest_2121at 2252.820 kb on + strand, within Psest_2121at 2253.476 kb on + strand, within Psest_2121at 2253.477 kb on - strand, within Psest_2121at 2253.477 kb on - strand, within Psest_2121at 2253.477 kb on - strand, within Psest_2121at 2253.497 kb on + strand, within Psest_2121at 2253.497 kb on + strand, within Psest_2121at 2253.498 kb on - strand, within Psest_2121at 2253.498 kb on - strand, within Psest_2121at 2253.500 kb on - strandat 2253.530 kb on + strandat 2253.531 kb on - strandat 2253.531 kb on - strandat 2253.531 kb on - strandat 2253.531 kb on - strandat 2253.788 kb on + strand, within Psest_2122at 2253.788 kb on + strand, within Psest_2122at 2253.932 kb on + strandat 2254.088 kb on + strandat 2254.535 kb on - strand, within Psest_2123

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
remove
2,251,555 + -0.7
2,251,618 + -1.9
2,251,618 + +0.0
2,251,618 + -1.0
2,251,618 + +0.1
2,251,619 - -1.0
2,251,619 - -0.7
2,251,619 - -0.5
2,251,897 + Psest_2120 0.39 +1.4
2,251,898 - Psest_2120 0.39 -2.1
2,251,898 - Psest_2120 0.39 -0.5
2,252,201 - Psest_2120 0.73 -1.2
2,252,216 + Psest_2120 0.74 -0.9
2,252,217 - Psest_2120 0.74 -0.9
2,252,648 + +2.7
2,252,648 + Psest_2121 0.13 -1.7
2,252,649 - Psest_2121 0.13 +0.1
2,252,649 - Psest_2121 0.13 -0.9
2,252,820 + Psest_2121 0.29 -0.1
2,252,820 + Psest_2121 0.29 -1.2
2,252,820 + Psest_2121 0.29 -0.8
2,252,820 + Psest_2121 0.29 +0.1
2,252,820 + Psest_2121 0.29 -0.2
2,252,820 + Psest_2121 0.29 +1.1
2,253,476 + Psest_2121 0.88 -2.3
2,253,477 - Psest_2121 0.88 -0.5
2,253,477 - Psest_2121 0.88 -1.6
2,253,477 - Psest_2121 0.88 -1.2
2,253,497 + Psest_2121 0.90 +2.1
2,253,497 + Psest_2121 0.90 -1.3
2,253,498 - Psest_2121 0.90 -0.2
2,253,498 - Psest_2121 0.90 -0.7
2,253,500 - +0.8
2,253,530 + -1.5
2,253,531 - -1.2
2,253,531 - +0.1
2,253,531 - -1.8
2,253,531 - +0.1
2,253,788 + Psest_2122 0.61 +0.7
2,253,788 + Psest_2122 0.61 -0.7
2,253,932 + -0.1
2,254,088 + +1.1
2,254,535 - Psest_2123 0.41 -0.9

Or see this region's nucleotide sequence