Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2112

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2110 and Psest_2111 are separated by 142 nucleotidesPsest_2111 and Psest_2112 are separated by 400 nucleotidesPsest_2112 and Psest_2113 are separated by 257 nucleotides Psest_2110: Psest_2110 - hypothetical protein, at 2,239,666 to 2,239,947 _2110 Psest_2111: Psest_2111 - hypothetical protein, at 2,240,090 to 2,240,359 _2111 Psest_2112: Psest_2112 - Methyl-accepting chemotaxis protein, at 2,240,760 to 2,242,394 _2112 Psest_2113: Psest_2113 - undecaprenyl-diphosphatase UppP, at 2,242,652 to 2,243,482 _2113 Position (kb) 2240 2241 2242 2243Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2239.769 kb on + strand, within Psest_2110at 2239.769 kb on + strand, within Psest_2110at 2239.769 kb on + strand, within Psest_2110at 2239.769 kb on + strand, within Psest_2110at 2239.769 kb on + strand, within Psest_2110at 2239.769 kb on + strand, within Psest_2110at 2239.769 kb on + strand, within Psest_2110at 2239.770 kb on - strand, within Psest_2110at 2239.770 kb on - strand, within Psest_2110at 2239.770 kb on - strand, within Psest_2110at 2239.928 kb on + strandat 2239.929 kb on - strandat 2240.022 kb on - strandat 2240.022 kb on - strandat 2240.390 kb on + strandat 2240.422 kb on - strandat 2240.422 kb on - strandat 2240.422 kb on - strandat 2240.548 kb on + strandat 2240.549 kb on - strandat 2240.703 kb on + strandat 2241.408 kb on + strand, within Psest_2112at 2241.409 kb on - strand, within Psest_2112at 2241.457 kb on + strand, within Psest_2112at 2241.462 kb on - strand, within Psest_2112at 2241.462 kb on - strand, within Psest_2112at 2241.829 kb on + strand, within Psest_2112at 2241.829 kb on + strand, within Psest_2112at 2241.829 kb on + strand, within Psest_2112at 2241.829 kb on + strand, within Psest_2112at 2241.829 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.862 kb on + strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.863 kb on - strand, within Psest_2112at 2241.910 kb on + strand, within Psest_2112at 2241.910 kb on + strand, within Psest_2112at 2241.910 kb on + strand, within Psest_2112at 2241.910 kb on + strand, within Psest_2112at 2241.910 kb on + strand, within Psest_2112at 2241.910 kb on + strand, within Psest_2112at 2241.911 kb on - strand, within Psest_2112at 2241.911 kb on - strand, within Psest_2112at 2241.911 kb on - strand, within Psest_2112at 2241.911 kb on - strand, within Psest_2112at 2241.911 kb on - strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.958 kb on + strand, within Psest_2112at 2241.959 kb on - strand, within Psest_2112at 2242.115 kb on - strand, within Psest_2112at 2242.117 kb on + strand, within Psest_2112at 2242.117 kb on + strand, within Psest_2112at 2242.276 kb on + strandat 2242.276 kb on + strandat 2242.276 kb on + strandat 2242.277 kb on - strandat 2242.368 kb on + strandat 2242.413 kb on + strandat 2242.413 kb on + strandat 2242.432 kb on + strandat 2242.494 kb on + strandat 2242.552 kb on + strandat 2242.552 kb on + strandat 2242.600 kb on + strandat 2242.600 kb on + strandat 2242.600 kb on + strandat 2242.600 kb on + strandat 2242.600 kb on + strandat 2242.600 kb on + strandat 2242.600 kb on + strandat 2242.600 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strandat 2242.602 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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2,239,769 + Psest_2110 0.37 -0.7
2,239,769 + Psest_2110 0.37 +0.8
2,239,769 + Psest_2110 0.37 -1.0
2,239,769 + Psest_2110 0.37 -0.0
2,239,769 + Psest_2110 0.37 -0.2
2,239,769 + Psest_2110 0.37 -0.3
2,239,769 + Psest_2110 0.37 -3.1
2,239,770 - Psest_2110 0.37 +1.9
2,239,770 - Psest_2110 0.37 -2.2
2,239,770 - Psest_2110 0.37 +0.8
2,239,928 + -0.7
2,239,929 - -0.4
2,240,022 - -1.3
2,240,022 - +0.4
2,240,390 + -0.3
2,240,422 - +2.1
2,240,422 - -0.6
2,240,422 - -1.3
2,240,548 + +0.3
2,240,549 - -1.0
2,240,703 + +1.4
2,241,408 + Psest_2112 0.40 -1.9
2,241,409 - Psest_2112 0.40 +0.3
2,241,457 + Psest_2112 0.43 -0.1
2,241,462 - Psest_2112 0.43 -0.5
2,241,462 - Psest_2112 0.43 -0.0
2,241,829 + Psest_2112 0.65 -1.5
2,241,829 + Psest_2112 0.65 -1.5
2,241,829 + Psest_2112 0.65 -0.2
2,241,829 + Psest_2112 0.65 -0.9
2,241,829 + Psest_2112 0.65 -1.5
2,241,862 + Psest_2112 0.67 -0.4
2,241,862 + Psest_2112 0.67 -0.3
2,241,862 + Psest_2112 0.67 +1.9
2,241,862 + Psest_2112 0.67 +1.4
2,241,862 + Psest_2112 0.67 -0.6
2,241,862 + Psest_2112 0.67 -0.5
2,241,862 + Psest_2112 0.67 -1.1
2,241,862 + Psest_2112 0.67 +0.1
2,241,862 + Psest_2112 0.67 +0.1
2,241,862 + Psest_2112 0.67 +1.5
2,241,862 + Psest_2112 0.67 +1.0
2,241,862 + Psest_2112 0.67 -1.5
2,241,862 + Psest_2112 0.67 -2.3
2,241,862 + Psest_2112 0.67 -1.9
2,241,862 + Psest_2112 0.67 -3.7
2,241,862 + Psest_2112 0.67 +0.5
2,241,862 + Psest_2112 0.67 +0.8
2,241,862 + Psest_2112 0.67 -0.2
2,241,862 + Psest_2112 0.67 -0.5
2,241,862 + Psest_2112 0.67 -0.8
2,241,862 + Psest_2112 0.67 +0.7
2,241,862 + Psest_2112 0.67 +0.0
2,241,862 + Psest_2112 0.67 -1.4
2,241,862 + Psest_2112 0.67 +0.8
2,241,862 + Psest_2112 0.67 -2.5
2,241,862 + Psest_2112 0.67 -1.4
2,241,862 + Psest_2112 0.67 +0.5
2,241,863 - Psest_2112 0.67 -1.2
2,241,863 - Psest_2112 0.67 +0.1
2,241,863 - Psest_2112 0.67 -0.4
2,241,863 - Psest_2112 0.67 -0.3
2,241,863 - Psest_2112 0.67 -1.9
2,241,863 - Psest_2112 0.67 +0.7
2,241,863 - Psest_2112 0.67 -0.5
2,241,863 - Psest_2112 0.67 -0.8
2,241,863 - Psest_2112 0.67 -0.5
2,241,910 + Psest_2112 0.70 -0.5
2,241,910 + Psest_2112 0.70 +0.5
2,241,910 + Psest_2112 0.70 -0.5
2,241,910 + Psest_2112 0.70 +0.6
2,241,910 + Psest_2112 0.70 +0.0
2,241,910 + Psest_2112 0.70 -1.5
2,241,911 - Psest_2112 0.70 -1.2
2,241,911 - Psest_2112 0.70 +0.4
2,241,911 - Psest_2112 0.70 -1.3
2,241,911 - Psest_2112 0.70 +1.5
2,241,911 - Psest_2112 0.70 -1.5
2,241,958 + Psest_2112 0.73 -1.0
2,241,958 + Psest_2112 0.73 -0.6
2,241,958 + Psest_2112 0.73 -0.8
2,241,958 + Psest_2112 0.73 -1.0
2,241,958 + Psest_2112 0.73 -0.6
2,241,958 + Psest_2112 0.73 -0.8
2,241,958 + Psest_2112 0.73 -0.1
2,241,958 + Psest_2112 0.73 +1.1
2,241,958 + Psest_2112 0.73 +0.5
2,241,959 - Psest_2112 0.73 -2.0
2,242,115 - Psest_2112 0.83 +0.1
2,242,117 + Psest_2112 0.83 -1.4
2,242,117 + Psest_2112 0.83 -1.9
2,242,276 + -0.8
2,242,276 + +1.1
2,242,276 + -0.4
2,242,277 - -0.2
2,242,368 + -0.9
2,242,413 + -0.8
2,242,413 + -0.8
2,242,432 + -0.1
2,242,494 + -0.9
2,242,552 + -0.5
2,242,552 + -1.0
2,242,600 + +2.1
2,242,600 + -2.5
2,242,600 + -1.5
2,242,600 + -1.0
2,242,600 + +0.1
2,242,600 + -0.2
2,242,600 + -0.4
2,242,600 + -0.2
2,242,602 + -0.5
2,242,602 + -0.8
2,242,602 + -0.8
2,242,602 + -1.3
2,242,602 + +0.1
2,242,602 + -0.9
2,242,602 + -2.7
2,242,602 + +0.6
2,242,602 + -0.3
2,242,602 + -0.7
2,242,602 + -0.7

Or see this region's nucleotide sequence