Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2110 and Psest_2111 are separated by 142 nucleotides Psest_2111 and Psest_2112 are separated by 400 nucleotides Psest_2112 and Psest_2113 are separated by 257 nucleotides
Psest_2110: Psest_2110 - hypothetical protein, at 2,239,666 to 2,239,947
_2110
Psest_2111: Psest_2111 - hypothetical protein, at 2,240,090 to 2,240,359
_2111
Psest_2112: Psest_2112 - Methyl-accepting chemotaxis protein, at 2,240,760 to 2,242,394
_2112
Psest_2113: Psest_2113 - undecaprenyl-diphosphatase UppP, at 2,242,652 to 2,243,482
_2113
Position (kb)
2240
2241
2242
2243 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2239.769 kb on + strand, within Psest_2110 at 2239.769 kb on + strand, within Psest_2110 at 2239.769 kb on + strand, within Psest_2110 at 2239.769 kb on + strand, within Psest_2110 at 2239.769 kb on + strand, within Psest_2110 at 2239.769 kb on + strand, within Psest_2110 at 2239.769 kb on + strand, within Psest_2110 at 2239.770 kb on - strand, within Psest_2110 at 2239.770 kb on - strand, within Psest_2110 at 2239.770 kb on - strand, within Psest_2110 at 2239.928 kb on + strand at 2239.929 kb on - strand at 2240.022 kb on - strand at 2240.022 kb on - strand at 2240.390 kb on + strand at 2240.422 kb on - strand at 2240.422 kb on - strand at 2240.422 kb on - strand at 2240.548 kb on + strand at 2240.549 kb on - strand at 2240.703 kb on + strand at 2241.408 kb on + strand, within Psest_2112 at 2241.409 kb on - strand, within Psest_2112 at 2241.457 kb on + strand, within Psest_2112 at 2241.462 kb on - strand, within Psest_2112 at 2241.462 kb on - strand, within Psest_2112 at 2241.829 kb on + strand, within Psest_2112 at 2241.829 kb on + strand, within Psest_2112 at 2241.829 kb on + strand, within Psest_2112 at 2241.829 kb on + strand, within Psest_2112 at 2241.829 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.862 kb on + strand, within Psest_2112 at 2241.863 kb on - strand, within Psest_2112 at 2241.863 kb on - strand, within Psest_2112 at 2241.863 kb on - strand, within Psest_2112 at 2241.863 kb on - strand, within Psest_2112 at 2241.863 kb on - strand, within Psest_2112 at 2241.863 kb on - strand, within Psest_2112 at 2241.863 kb on - strand, within Psest_2112 at 2241.863 kb on - strand, within Psest_2112 at 2241.863 kb on - strand, within Psest_2112 at 2241.910 kb on + strand, within Psest_2112 at 2241.910 kb on + strand, within Psest_2112 at 2241.910 kb on + strand, within Psest_2112 at 2241.910 kb on + strand, within Psest_2112 at 2241.910 kb on + strand, within Psest_2112 at 2241.910 kb on + strand, within Psest_2112 at 2241.911 kb on - strand, within Psest_2112 at 2241.911 kb on - strand, within Psest_2112 at 2241.911 kb on - strand, within Psest_2112 at 2241.911 kb on - strand, within Psest_2112 at 2241.911 kb on - strand, within Psest_2112 at 2241.958 kb on + strand, within Psest_2112 at 2241.958 kb on + strand, within Psest_2112 at 2241.958 kb on + strand, within Psest_2112 at 2241.958 kb on + strand, within Psest_2112 at 2241.958 kb on + strand, within Psest_2112 at 2241.958 kb on + strand, within Psest_2112 at 2241.958 kb on + strand, within Psest_2112 at 2241.958 kb on + strand, within Psest_2112 at 2241.958 kb on + strand, within Psest_2112 at 2241.959 kb on - strand, within Psest_2112 at 2242.115 kb on - strand, within Psest_2112 at 2242.117 kb on + strand, within Psest_2112 at 2242.117 kb on + strand, within Psest_2112 at 2242.276 kb on + strand at 2242.276 kb on + strand at 2242.276 kb on + strand at 2242.277 kb on - strand at 2242.368 kb on + strand at 2242.413 kb on + strand at 2242.413 kb on + strand at 2242.432 kb on + strand at 2242.494 kb on + strand at 2242.552 kb on + strand at 2242.552 kb on + strand at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.600 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand at 2242.602 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,239,769 + Psest_2110 0.37 -0.7 2,239,769 + Psest_2110 0.37 +0.8 2,239,769 + Psest_2110 0.37 -1.0 2,239,769 + Psest_2110 0.37 -0.0 2,239,769 + Psest_2110 0.37 -0.2 2,239,769 + Psest_2110 0.37 -0.3 2,239,769 + Psest_2110 0.37 -3.1 2,239,770 - Psest_2110 0.37 +1.9 2,239,770 - Psest_2110 0.37 -2.2 2,239,770 - Psest_2110 0.37 +0.8 2,239,928 + -0.7 2,239,929 - -0.4 2,240,022 - -1.3 2,240,022 - +0.4 2,240,390 + -0.3 2,240,422 - +2.1 2,240,422 - -0.6 2,240,422 - -1.3 2,240,548 + +0.3 2,240,549 - -1.0 2,240,703 + +1.4 2,241,408 + Psest_2112 0.40 -1.9 2,241,409 - Psest_2112 0.40 +0.3 2,241,457 + Psest_2112 0.43 -0.1 2,241,462 - Psest_2112 0.43 -0.5 2,241,462 - Psest_2112 0.43 -0.0 2,241,829 + Psest_2112 0.65 -1.5 2,241,829 + Psest_2112 0.65 -1.5 2,241,829 + Psest_2112 0.65 -0.2 2,241,829 + Psest_2112 0.65 -0.9 2,241,829 + Psest_2112 0.65 -1.5 2,241,862 + Psest_2112 0.67 -0.4 2,241,862 + Psest_2112 0.67 -0.3 2,241,862 + Psest_2112 0.67 +1.9 2,241,862 + Psest_2112 0.67 +1.4 2,241,862 + Psest_2112 0.67 -0.6 2,241,862 + Psest_2112 0.67 -0.5 2,241,862 + Psest_2112 0.67 -1.1 2,241,862 + Psest_2112 0.67 +0.1 2,241,862 + Psest_2112 0.67 +0.1 2,241,862 + Psest_2112 0.67 +1.5 2,241,862 + Psest_2112 0.67 +1.0 2,241,862 + Psest_2112 0.67 -1.5 2,241,862 + Psest_2112 0.67 -2.3 2,241,862 + Psest_2112 0.67 -1.9 2,241,862 + Psest_2112 0.67 -3.7 2,241,862 + Psest_2112 0.67 +0.5 2,241,862 + Psest_2112 0.67 +0.8 2,241,862 + Psest_2112 0.67 -0.2 2,241,862 + Psest_2112 0.67 -0.5 2,241,862 + Psest_2112 0.67 -0.8 2,241,862 + Psest_2112 0.67 +0.7 2,241,862 + Psest_2112 0.67 +0.0 2,241,862 + Psest_2112 0.67 -1.4 2,241,862 + Psest_2112 0.67 +0.8 2,241,862 + Psest_2112 0.67 -2.5 2,241,862 + Psest_2112 0.67 -1.4 2,241,862 + Psest_2112 0.67 +0.5 2,241,863 - Psest_2112 0.67 -1.2 2,241,863 - Psest_2112 0.67 +0.1 2,241,863 - Psest_2112 0.67 -0.4 2,241,863 - Psest_2112 0.67 -0.3 2,241,863 - Psest_2112 0.67 -1.9 2,241,863 - Psest_2112 0.67 +0.7 2,241,863 - Psest_2112 0.67 -0.5 2,241,863 - Psest_2112 0.67 -0.8 2,241,863 - Psest_2112 0.67 -0.5 2,241,910 + Psest_2112 0.70 -0.5 2,241,910 + Psest_2112 0.70 +0.5 2,241,910 + Psest_2112 0.70 -0.5 2,241,910 + Psest_2112 0.70 +0.6 2,241,910 + Psest_2112 0.70 +0.0 2,241,910 + Psest_2112 0.70 -1.5 2,241,911 - Psest_2112 0.70 -1.2 2,241,911 - Psest_2112 0.70 +0.4 2,241,911 - Psest_2112 0.70 -1.3 2,241,911 - Psest_2112 0.70 +1.5 2,241,911 - Psest_2112 0.70 -1.5 2,241,958 + Psest_2112 0.73 -1.0 2,241,958 + Psest_2112 0.73 -0.6 2,241,958 + Psest_2112 0.73 -0.8 2,241,958 + Psest_2112 0.73 -1.0 2,241,958 + Psest_2112 0.73 -0.6 2,241,958 + Psest_2112 0.73 -0.8 2,241,958 + Psest_2112 0.73 -0.1 2,241,958 + Psest_2112 0.73 +1.1 2,241,958 + Psest_2112 0.73 +0.5 2,241,959 - Psest_2112 0.73 -2.0 2,242,115 - Psest_2112 0.83 +0.1 2,242,117 + Psest_2112 0.83 -1.4 2,242,117 + Psest_2112 0.83 -1.9 2,242,276 + -0.8 2,242,276 + +1.1 2,242,276 + -0.4 2,242,277 - -0.2 2,242,368 + -0.9 2,242,413 + -0.8 2,242,413 + -0.8 2,242,432 + -0.1 2,242,494 + -0.9 2,242,552 + -0.5 2,242,552 + -1.0 2,242,600 + +2.1 2,242,600 + -2.5 2,242,600 + -1.5 2,242,600 + -1.0 2,242,600 + +0.1 2,242,600 + -0.2 2,242,600 + -0.4 2,242,600 + -0.2 2,242,602 + -0.5 2,242,602 + -0.8 2,242,602 + -0.8 2,242,602 + -1.3 2,242,602 + +0.1 2,242,602 + -0.9 2,242,602 + -2.7 2,242,602 + +0.6 2,242,602 + -0.3 2,242,602 + -0.7 2,242,602 + -0.7
Or see this region's nucleotide sequence