Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2107 and Psest_2108 are separated by 222 nucleotides Psest_2108 and Psest_2109 are separated by 105 nucleotides Psest_2109 and Psest_2110 are separated by 100 nucleotides Psest_2110 and Psest_2111 are separated by 142 nucleotides
Psest_2107: Psest_2107 - Topoisomerase IB, at 2,237,436 to 2,238,380
_2107
Psest_2108: Psest_2108 - hypothetical protein, at 2,238,603 to 2,238,767
_2108
Psest_2109: Psest_2109 - Predicted membrane protein, at 2,238,873 to 2,239,565
_2109
Psest_2110: Psest_2110 - hypothetical protein, at 2,239,666 to 2,239,947
_2110
Psest_2111: Psest_2111 - hypothetical protein, at 2,240,090 to 2,240,359
_2111
Position (kb)
2238
2239
2240 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2237.888 kb on + strand, within Psest_2107 at 2237.889 kb on - strand, within Psest_2107 at 2237.963 kb on + strand, within Psest_2107 at 2237.983 kb on + strand, within Psest_2107 at 2237.984 kb on - strand, within Psest_2107 at 2237.984 kb on - strand, within Psest_2107 at 2238.157 kb on + strand, within Psest_2107 at 2238.157 kb on + strand, within Psest_2107 at 2238.157 kb on + strand, within Psest_2107 at 2238.270 kb on + strand, within Psest_2107 at 2238.271 kb on - strand, within Psest_2107 at 2238.271 kb on - strand, within Psest_2107 at 2238.271 kb on - strand, within Psest_2107 at 2238.271 kb on - strand, within Psest_2107 at 2238.280 kb on + strand, within Psest_2107 at 2238.291 kb on + strand at 2238.358 kb on + strand at 2238.358 kb on + strand at 2238.358 kb on + strand at 2238.359 kb on - strand at 2238.359 kb on - strand at 2238.415 kb on + strand at 2238.415 kb on + strand at 2238.416 kb on - strand at 2238.416 kb on - strand at 2238.416 kb on - strand at 2238.416 kb on - strand at 2238.562 kb on - strand at 2238.604 kb on + strand at 2238.604 kb on + strand at 2238.608 kb on + strand at 2238.832 kb on - strand at 2238.864 kb on + strand at 2238.871 kb on + strand at 2238.871 kb on + strand at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2239.027 kb on + strand, within Psest_2109 at 2239.047 kb on + strand, within Psest_2109 at 2239.047 kb on + strand, within Psest_2109 at 2239.048 kb on - strand, within Psest_2109 at 2239.048 kb on - strand, within Psest_2109 at 2239.048 kb on - strand, within Psest_2109 at 2239.213 kb on + strand, within Psest_2109 at 2239.213 kb on + strand, within Psest_2109 at 2239.213 kb on + strand, within Psest_2109 at 2239.214 kb on - strand, within Psest_2109 at 2239.214 kb on - strand, within Psest_2109 at 2239.214 kb on - strand, within Psest_2109 at 2239.214 kb on - strand, within Psest_2109 at 2239.361 kb on - strand, within Psest_2109 at 2239.628 kb on + strand at 2239.629 kb on - strand at 2239.629 kb on - strand at 2239.681 kb on + strand at 2239.682 kb on - strand at 2239.769 kb on + strand, within Psest_2110 at 2239.769 kb on + strand, within Psest_2110 at 2239.769 kb on + strand, within Psest_2110 at 2239.769 kb on + strand, within Psest_2110 at 2239.769 kb on + strand, within Psest_2110 at 2239.769 kb on + strand, within Psest_2110 at 2239.769 kb on + strand, within Psest_2110 at 2239.770 kb on - strand, within Psest_2110 at 2239.770 kb on - strand, within Psest_2110 at 2239.770 kb on - strand, within Psest_2110 at 2239.928 kb on + strand at 2239.929 kb on - strand at 2240.022 kb on - strand at 2240.022 kb on - strand at 2240.390 kb on + strand at 2240.422 kb on - strand at 2240.422 kb on - strand at 2240.422 kb on - strand at 2240.548 kb on + strand at 2240.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,237,888 + Psest_2107 0.48 -0.3 2,237,889 - Psest_2107 0.48 +1.2 2,237,963 + Psest_2107 0.56 +1.2 2,237,983 + Psest_2107 0.58 +0.5 2,237,984 - Psest_2107 0.58 +0.2 2,237,984 - Psest_2107 0.58 +1.2 2,238,157 + Psest_2107 0.76 +0.2 2,238,157 + Psest_2107 0.76 -1.2 2,238,157 + Psest_2107 0.76 -0.4 2,238,270 + Psest_2107 0.88 -2.2 2,238,271 - Psest_2107 0.88 +0.2 2,238,271 - Psest_2107 0.88 -1.4 2,238,271 - Psest_2107 0.88 +0.3 2,238,271 - Psest_2107 0.88 -0.8 2,238,280 + Psest_2107 0.89 +0.6 2,238,291 + +1.6 2,238,358 + +0.2 2,238,358 + +0.9 2,238,358 + +0.8 2,238,359 - -0.4 2,238,359 - -0.4 2,238,415 + +0.7 2,238,415 + +1.5 2,238,416 - -0.7 2,238,416 - +0.3 2,238,416 - -1.7 2,238,416 - -0.2 2,238,562 - +1.2 2,238,604 + +0.1 2,238,604 + -1.5 2,238,608 + -0.9 2,238,832 - -0.5 2,238,864 + -0.1 2,238,871 + +0.3 2,238,871 + +0.4 2,238,988 + Psest_2109 0.17 +0.1 2,238,988 + Psest_2109 0.17 +0.1 2,238,988 + Psest_2109 0.17 -0.1 2,238,988 + Psest_2109 0.17 +0.2 2,238,988 + Psest_2109 0.17 -0.0 2,238,988 + Psest_2109 0.17 -1.1 2,238,988 + Psest_2109 0.17 -1.7 2,238,988 + Psest_2109 0.17 -0.0 2,238,988 + Psest_2109 0.17 +1.7 2,238,989 - Psest_2109 0.17 -0.9 2,238,989 - Psest_2109 0.17 -0.5 2,238,989 - Psest_2109 0.17 -0.8 2,238,989 - Psest_2109 0.17 -1.2 2,238,989 - Psest_2109 0.17 -1.2 2,238,989 - Psest_2109 0.17 -0.3 2,238,989 - Psest_2109 0.17 -1.2 2,238,989 - Psest_2109 0.17 -1.6 2,238,989 - Psest_2109 0.17 -1.7 2,238,989 - Psest_2109 0.17 -1.4 2,238,989 - Psest_2109 0.17 -0.1 2,238,989 - Psest_2109 0.17 +1.3 2,239,027 + Psest_2109 0.22 -1.2 2,239,047 + Psest_2109 0.25 +1.0 2,239,047 + Psest_2109 0.25 -1.2 2,239,048 - Psest_2109 0.25 -0.6 2,239,048 - Psest_2109 0.25 +0.1 2,239,048 - Psest_2109 0.25 -1.1 2,239,213 + Psest_2109 0.49 -1.2 2,239,213 + Psest_2109 0.49 -0.3 2,239,213 + Psest_2109 0.49 -0.9 2,239,214 - Psest_2109 0.49 -0.5 2,239,214 - Psest_2109 0.49 -3.5 2,239,214 - Psest_2109 0.49 -0.3 2,239,214 - Psest_2109 0.49 -0.3 2,239,361 - Psest_2109 0.70 +0.6 2,239,628 + -2.0 2,239,629 - +0.8 2,239,629 - +0.4 2,239,681 + -1.8 2,239,682 - +0.6 2,239,769 + Psest_2110 0.37 -0.7 2,239,769 + Psest_2110 0.37 +0.8 2,239,769 + Psest_2110 0.37 -1.0 2,239,769 + Psest_2110 0.37 -0.0 2,239,769 + Psest_2110 0.37 -0.2 2,239,769 + Psest_2110 0.37 -0.3 2,239,769 + Psest_2110 0.37 -3.1 2,239,770 - Psest_2110 0.37 +1.9 2,239,770 - Psest_2110 0.37 -2.2 2,239,770 - Psest_2110 0.37 +0.8 2,239,928 + -0.7 2,239,929 - -0.4 2,240,022 - -1.3 2,240,022 - +0.4 2,240,390 + -0.3 2,240,422 - +2.1 2,240,422 - -0.6 2,240,422 - -1.3 2,240,548 + +0.3 2,240,549 - -1.0
Or see this region's nucleotide sequence