Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2105 and Psest_2106 are separated by 2 nucleotides Psest_2106 and Psest_2107 are separated by 27 nucleotides Psest_2107 and Psest_2108 are separated by 222 nucleotides Psest_2108 and Psest_2109 are separated by 105 nucleotides
Psest_2105: Psest_2105 - Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain, at 2,235,466 to 2,236,449
_2105
Psest_2106: Psest_2106 - diguanylate cyclase (GGDEF) domain, at 2,236,452 to 2,237,408
_2106
Psest_2107: Psest_2107 - Topoisomerase IB, at 2,237,436 to 2,238,380
_2107
Psest_2108: Psest_2108 - hypothetical protein, at 2,238,603 to 2,238,767
_2108
Psest_2109: Psest_2109 - Predicted membrane protein, at 2,238,873 to 2,239,565
_2109
Position (kb)
2237
2238
2239 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2236.439 kb on + strand at 2236.623 kb on - strand, within Psest_2106 at 2236.743 kb on + strand, within Psest_2106 at 2236.744 kb on - strand, within Psest_2106 at 2236.776 kb on + strand, within Psest_2106 at 2236.777 kb on - strand, within Psest_2106 at 2236.777 kb on - strand, within Psest_2106 at 2236.777 kb on - strand, within Psest_2106 at 2236.777 kb on - strand, within Psest_2106 at 2236.831 kb on + strand, within Psest_2106 at 2236.831 kb on + strand, within Psest_2106 at 2236.832 kb on - strand, within Psest_2106 at 2236.832 kb on - strand, within Psest_2106 at 2236.845 kb on + strand, within Psest_2106 at 2236.846 kb on - strand, within Psest_2106 at 2236.861 kb on + strand, within Psest_2106 at 2236.941 kb on + strand, within Psest_2106 at 2236.942 kb on - strand, within Psest_2106 at 2236.942 kb on - strand, within Psest_2106 at 2237.061 kb on + strand, within Psest_2106 at 2237.061 kb on + strand, within Psest_2106 at 2237.061 kb on + strand, within Psest_2106 at 2237.061 kb on + strand, within Psest_2106 at 2237.061 kb on + strand, within Psest_2106 at 2237.061 kb on + strand, within Psest_2106 at 2237.062 kb on - strand, within Psest_2106 at 2237.062 kb on - strand, within Psest_2106 at 2237.062 kb on - strand, within Psest_2106 at 2237.062 kb on - strand, within Psest_2106 at 2237.062 kb on - strand, within Psest_2106 at 2237.062 kb on - strand, within Psest_2106 at 2237.062 kb on - strand, within Psest_2106 at 2237.062 kb on - strand, within Psest_2106 at 2237.062 kb on - strand, within Psest_2106 at 2237.358 kb on + strand at 2237.358 kb on + strand at 2237.358 kb on + strand at 2237.358 kb on + strand at 2237.359 kb on - strand at 2237.359 kb on - strand at 2237.359 kb on - strand at 2237.359 kb on - strand at 2237.359 kb on - strand at 2237.359 kb on - strand at 2237.359 kb on - strand at 2237.359 kb on - strand at 2237.567 kb on + strand, within Psest_2107 at 2237.568 kb on - strand, within Psest_2107 at 2237.569 kb on + strand, within Psest_2107 at 2237.569 kb on + strand, within Psest_2107 at 2237.569 kb on + strand, within Psest_2107 at 2237.569 kb on + strand, within Psest_2107 at 2237.569 kb on + strand, within Psest_2107 at 2237.569 kb on + strand, within Psest_2107 at 2237.569 kb on + strand, within Psest_2107 at 2237.569 kb on + strand, within Psest_2107 at 2237.569 kb on + strand, within Psest_2107 at 2237.569 kb on + strand, within Psest_2107 at 2237.569 kb on + strand, within Psest_2107 at 2237.570 kb on - strand, within Psest_2107 at 2237.570 kb on - strand, within Psest_2107 at 2237.570 kb on - strand, within Psest_2107 at 2237.570 kb on - strand, within Psest_2107 at 2237.570 kb on - strand, within Psest_2107 at 2237.570 kb on - strand, within Psest_2107 at 2237.654 kb on + strand, within Psest_2107 at 2237.655 kb on - strand, within Psest_2107 at 2237.655 kb on - strand, within Psest_2107 at 2237.757 kb on + strand, within Psest_2107 at 2237.757 kb on + strand, within Psest_2107 at 2237.761 kb on + strand, within Psest_2107 at 2237.761 kb on + strand, within Psest_2107 at 2237.762 kb on - strand, within Psest_2107 at 2237.888 kb on + strand, within Psest_2107 at 2237.889 kb on - strand, within Psest_2107 at 2237.963 kb on + strand, within Psest_2107 at 2237.983 kb on + strand, within Psest_2107 at 2237.984 kb on - strand, within Psest_2107 at 2237.984 kb on - strand, within Psest_2107 at 2238.157 kb on + strand, within Psest_2107 at 2238.157 kb on + strand, within Psest_2107 at 2238.157 kb on + strand, within Psest_2107 at 2238.270 kb on + strand, within Psest_2107 at 2238.271 kb on - strand, within Psest_2107 at 2238.271 kb on - strand, within Psest_2107 at 2238.271 kb on - strand, within Psest_2107 at 2238.271 kb on - strand, within Psest_2107 at 2238.280 kb on + strand, within Psest_2107 at 2238.291 kb on + strand at 2238.358 kb on + strand at 2238.358 kb on + strand at 2238.358 kb on + strand at 2238.359 kb on - strand at 2238.359 kb on - strand at 2238.415 kb on + strand at 2238.415 kb on + strand at 2238.416 kb on - strand at 2238.416 kb on - strand at 2238.416 kb on - strand at 2238.416 kb on - strand at 2238.562 kb on - strand at 2238.604 kb on + strand at 2238.604 kb on + strand at 2238.608 kb on + strand at 2238.832 kb on - strand at 2238.864 kb on + strand at 2238.871 kb on + strand at 2238.871 kb on + strand at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.988 kb on + strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2238.989 kb on - strand, within Psest_2109 at 2239.027 kb on + strand, within Psest_2109 at 2239.047 kb on + strand, within Psest_2109 at 2239.047 kb on + strand, within Psest_2109 at 2239.048 kb on - strand, within Psest_2109 at 2239.048 kb on - strand, within Psest_2109 at 2239.048 kb on - strand, within Psest_2109 at 2239.213 kb on + strand, within Psest_2109 at 2239.213 kb on + strand, within Psest_2109 at 2239.213 kb on + strand, within Psest_2109 at 2239.214 kb on - strand, within Psest_2109 at 2239.214 kb on - strand, within Psest_2109 at 2239.214 kb on - strand, within Psest_2109 at 2239.214 kb on - strand, within Psest_2109 at 2239.361 kb on - strand, within Psest_2109
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,236,439 + -0.6 2,236,623 - Psest_2106 0.18 +0.0 2,236,743 + Psest_2106 0.30 +0.3 2,236,744 - Psest_2106 0.31 -0.4 2,236,776 + Psest_2106 0.34 -1.4 2,236,777 - Psest_2106 0.34 -1.9 2,236,777 - Psest_2106 0.34 -1.4 2,236,777 - Psest_2106 0.34 -0.3 2,236,777 - Psest_2106 0.34 -0.3 2,236,831 + Psest_2106 0.40 -1.2 2,236,831 + Psest_2106 0.40 -3.5 2,236,832 - Psest_2106 0.40 +1.0 2,236,832 - Psest_2106 0.40 +0.2 2,236,845 + Psest_2106 0.41 +1.2 2,236,846 - Psest_2106 0.41 -0.1 2,236,861 + Psest_2106 0.43 -2.2 2,236,941 + Psest_2106 0.51 +0.5 2,236,942 - Psest_2106 0.51 -1.2 2,236,942 - Psest_2106 0.51 +0.2 2,237,061 + Psest_2106 0.64 +0.6 2,237,061 + Psest_2106 0.64 +3.2 2,237,061 + Psest_2106 0.64 +1.9 2,237,061 + Psest_2106 0.64 +1.2 2,237,061 + Psest_2106 0.64 -0.5 2,237,061 + Psest_2106 0.64 -0.2 2,237,062 - Psest_2106 0.64 -1.2 2,237,062 - Psest_2106 0.64 -1.9 2,237,062 - Psest_2106 0.64 -0.1 2,237,062 - Psest_2106 0.64 +0.4 2,237,062 - Psest_2106 0.64 +0.8 2,237,062 - Psest_2106 0.64 -1.8 2,237,062 - Psest_2106 0.64 -0.3 2,237,062 - Psest_2106 0.64 -2.5 2,237,062 - Psest_2106 0.64 -0.0 2,237,358 + -1.1 2,237,358 + -0.7 2,237,358 + -0.5 2,237,358 + +0.5 2,237,359 - -0.5 2,237,359 - +1.6 2,237,359 - -0.6 2,237,359 - -2.9 2,237,359 - +1.2 2,237,359 - +0.6 2,237,359 - +0.9 2,237,359 - +1.4 2,237,567 + Psest_2107 0.14 -0.5 2,237,568 - Psest_2107 0.14 -2.7 2,237,569 + Psest_2107 0.14 -2.4 2,237,569 + Psest_2107 0.14 +0.2 2,237,569 + Psest_2107 0.14 -2.8 2,237,569 + Psest_2107 0.14 -2.3 2,237,569 + Psest_2107 0.14 +1.2 2,237,569 + Psest_2107 0.14 -2.5 2,237,569 + Psest_2107 0.14 -1.7 2,237,569 + Psest_2107 0.14 -0.7 2,237,569 + Psest_2107 0.14 -1.3 2,237,569 + Psest_2107 0.14 -0.9 2,237,569 + Psest_2107 0.14 +0.6 2,237,570 - Psest_2107 0.14 -0.6 2,237,570 - Psest_2107 0.14 -1.5 2,237,570 - Psest_2107 0.14 -0.2 2,237,570 - Psest_2107 0.14 -2.8 2,237,570 - Psest_2107 0.14 +0.7 2,237,570 - Psest_2107 0.14 -0.8 2,237,654 + Psest_2107 0.23 +0.2 2,237,655 - Psest_2107 0.23 +1.2 2,237,655 - Psest_2107 0.23 -1.0 2,237,757 + Psest_2107 0.34 -0.5 2,237,757 + Psest_2107 0.34 +0.2 2,237,761 + Psest_2107 0.34 -1.3 2,237,761 + Psest_2107 0.34 -0.7 2,237,762 - Psest_2107 0.34 +0.2 2,237,888 + Psest_2107 0.48 -0.3 2,237,889 - Psest_2107 0.48 +1.2 2,237,963 + Psest_2107 0.56 +1.2 2,237,983 + Psest_2107 0.58 +0.5 2,237,984 - Psest_2107 0.58 +0.2 2,237,984 - Psest_2107 0.58 +1.2 2,238,157 + Psest_2107 0.76 +0.2 2,238,157 + Psest_2107 0.76 -1.2 2,238,157 + Psest_2107 0.76 -0.4 2,238,270 + Psest_2107 0.88 -2.2 2,238,271 - Psest_2107 0.88 +0.2 2,238,271 - Psest_2107 0.88 -1.4 2,238,271 - Psest_2107 0.88 +0.3 2,238,271 - Psest_2107 0.88 -0.8 2,238,280 + Psest_2107 0.89 +0.6 2,238,291 + +1.6 2,238,358 + +0.2 2,238,358 + +0.9 2,238,358 + +0.8 2,238,359 - -0.4 2,238,359 - -0.4 2,238,415 + +0.7 2,238,415 + +1.5 2,238,416 - -0.7 2,238,416 - +0.3 2,238,416 - -1.7 2,238,416 - -0.2 2,238,562 - +1.2 2,238,604 + +0.1 2,238,604 + -1.5 2,238,608 + -0.9 2,238,832 - -0.5 2,238,864 + -0.1 2,238,871 + +0.3 2,238,871 + +0.4 2,238,988 + Psest_2109 0.17 +0.1 2,238,988 + Psest_2109 0.17 +0.1 2,238,988 + Psest_2109 0.17 -0.1 2,238,988 + Psest_2109 0.17 +0.2 2,238,988 + Psest_2109 0.17 -0.0 2,238,988 + Psest_2109 0.17 -1.1 2,238,988 + Psest_2109 0.17 -1.7 2,238,988 + Psest_2109 0.17 -0.0 2,238,988 + Psest_2109 0.17 +1.7 2,238,989 - Psest_2109 0.17 -0.9 2,238,989 - Psest_2109 0.17 -0.5 2,238,989 - Psest_2109 0.17 -0.8 2,238,989 - Psest_2109 0.17 -1.2 2,238,989 - Psest_2109 0.17 -1.2 2,238,989 - Psest_2109 0.17 -0.3 2,238,989 - Psest_2109 0.17 -1.2 2,238,989 - Psest_2109 0.17 -1.6 2,238,989 - Psest_2109 0.17 -1.7 2,238,989 - Psest_2109 0.17 -1.4 2,238,989 - Psest_2109 0.17 -0.1 2,238,989 - Psest_2109 0.17 +1.3 2,239,027 + Psest_2109 0.22 -1.2 2,239,047 + Psest_2109 0.25 +1.0 2,239,047 + Psest_2109 0.25 -1.2 2,239,048 - Psest_2109 0.25 -0.6 2,239,048 - Psest_2109 0.25 +0.1 2,239,048 - Psest_2109 0.25 -1.1 2,239,213 + Psest_2109 0.49 -1.2 2,239,213 + Psest_2109 0.49 -0.3 2,239,213 + Psest_2109 0.49 -0.9 2,239,214 - Psest_2109 0.49 -0.5 2,239,214 - Psest_2109 0.49 -3.5 2,239,214 - Psest_2109 0.49 -0.3 2,239,214 - Psest_2109 0.49 -0.3 2,239,361 - Psest_2109 0.70 +0.6
Or see this region's nucleotide sequence