Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2093 and Psest_2094 are separated by 83 nucleotides Psest_2094 and Psest_2095 are separated by 22 nucleotides
Psest_2093: Psest_2093 - Leucine Rich Repeat./Protein kinase domain., at 2,220,386 to 2,221,702
_2093
Psest_2094: Psest_2094 - Predicted Fe-S-cluster redox enzyme, at 2,221,786 to 2,222,826
_2094
Psest_2095: Psest_2095 - Arabinose efflux permease, at 2,222,849 to 2,223,997
_2095
Position (kb)
2221
2222
2223 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2221.038 kb on + strand, within Psest_2093 at 2221.355 kb on + strand, within Psest_2093 at 2221.355 kb on + strand, within Psest_2093 at 2221.583 kb on + strand at 2221.584 kb on - strand at 2221.691 kb on + strand at 2221.691 kb on + strand at 2221.691 kb on + strand at 2221.691 kb on + strand at 2221.691 kb on + strand at 2221.691 kb on + strand at 2221.691 kb on + strand at 2221.691 kb on + strand at 2221.691 kb on + strand at 2221.691 kb on + strand at 2221.692 kb on - strand at 2221.692 kb on - strand at 2221.692 kb on - strand at 2221.692 kb on - strand at 2221.692 kb on - strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.696 kb on + strand at 2221.697 kb on - strand at 2221.697 kb on - strand at 2221.697 kb on - strand at 2221.697 kb on - strand at 2221.697 kb on - strand at 2221.697 kb on - strand at 2221.697 kb on - strand at 2221.697 kb on - strand at 2221.697 kb on - strand at 2221.697 kb on - strand at 2221.697 kb on - strand at 2221.697 kb on - strand at 2221.697 kb on - strand at 2221.697 kb on - strand at 2221.697 kb on - strand at 2221.726 kb on + strand at 2221.726 kb on + strand at 2221.727 kb on - strand at 2221.752 kb on + strand at 2221.920 kb on - strand, within Psest_2094 at 2221.986 kb on - strand, within Psest_2094 at 2221.986 kb on - strand, within Psest_2094 at 2222.010 kb on - strand, within Psest_2094 at 2222.010 kb on - strand, within Psest_2094 at 2222.087 kb on + strand, within Psest_2094 at 2222.458 kb on + strand, within Psest_2094 at 2222.458 kb on + strand, within Psest_2094 at 2222.458 kb on + strand, within Psest_2094 at 2222.458 kb on + strand, within Psest_2094 at 2222.458 kb on + strand, within Psest_2094 at 2222.459 kb on - strand, within Psest_2094 at 2222.459 kb on - strand, within Psest_2094 at 2222.459 kb on - strand, within Psest_2094 at 2222.840 kb on + strand at 2223.342 kb on + strand, within Psest_2095 at 2223.343 kb on - strand, within Psest_2095 at 2223.343 kb on - strand, within Psest_2095 at 2223.365 kb on + strand, within Psest_2095 at 2223.366 kb on - strand, within Psest_2095 at 2223.366 kb on - strand, within Psest_2095 at 2223.531 kb on - strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.561 kb on + strand, within Psest_2095 at 2223.562 kb on - strand, within Psest_2095 at 2223.562 kb on - strand, within Psest_2095 at 2223.562 kb on - strand, within Psest_2095 at 2223.562 kb on - strand, within Psest_2095 at 2223.562 kb on - strand, within Psest_2095 at 2223.745 kb on + strand, within Psest_2095
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,221,038 + Psest_2093 0.50 +0.7 2,221,355 + Psest_2093 0.74 +0.0 2,221,355 + Psest_2093 0.74 -1.4 2,221,583 + +1.5 2,221,584 - +1.0 2,221,691 + -1.2 2,221,691 + +1.0 2,221,691 + +0.1 2,221,691 + -0.7 2,221,691 + +0.6 2,221,691 + -0.4 2,221,691 + -1.4 2,221,691 + -1.0 2,221,691 + +1.4 2,221,691 + +0.5 2,221,692 - +2.4 2,221,692 - -0.2 2,221,692 - +1.0 2,221,692 - -0.4 2,221,692 - -2.4 2,221,696 + +0.4 2,221,696 + -1.1 2,221,696 + -1.1 2,221,696 + +1.0 2,221,696 + +0.2 2,221,696 + +1.8 2,221,696 + +0.8 2,221,696 + -1.6 2,221,696 + -1.7 2,221,696 + +0.0 2,221,696 + -1.9 2,221,696 + -0.3 2,221,696 + +1.4 2,221,696 + +0.3 2,221,696 + +0.8 2,221,696 + +0.2 2,221,696 + -0.7 2,221,696 + +0.3 2,221,696 + -0.7 2,221,696 + +0.6 2,221,696 + +0.4 2,221,696 + +0.6 2,221,696 + +0.2 2,221,696 + +2.2 2,221,697 - -0.8 2,221,697 - +0.7 2,221,697 - -0.1 2,221,697 - -0.1 2,221,697 - -0.2 2,221,697 - -0.8 2,221,697 - +0.8 2,221,697 - -0.5 2,221,697 - +1.3 2,221,697 - +0.9 2,221,697 - -2.2 2,221,697 - -1.4 2,221,697 - -1.6 2,221,697 - -1.5 2,221,697 - -0.7 2,221,726 + -0.7 2,221,726 + -1.6 2,221,727 - +1.6 2,221,752 + +1.1 2,221,920 - Psest_2094 0.13 +0.8 2,221,986 - Psest_2094 0.19 +0.2 2,221,986 - Psest_2094 0.19 +2.1 2,222,010 - Psest_2094 0.22 +0.2 2,222,010 - Psest_2094 0.22 +0.4 2,222,087 + Psest_2094 0.29 +1.4 2,222,458 + Psest_2094 0.65 -0.5 2,222,458 + Psest_2094 0.65 -2.6 2,222,458 + Psest_2094 0.65 +2.8 2,222,458 + Psest_2094 0.65 -0.2 2,222,458 + Psest_2094 0.65 +0.6 2,222,459 - Psest_2094 0.65 +0.2 2,222,459 - Psest_2094 0.65 -0.2 2,222,459 - Psest_2094 0.65 +0.9 2,222,840 + +2.8 2,223,342 + Psest_2095 0.43 -1.1 2,223,343 - Psest_2095 0.43 +0.8 2,223,343 - Psest_2095 0.43 -2.0 2,223,365 + Psest_2095 0.45 +0.4 2,223,366 - Psest_2095 0.45 +3.5 2,223,366 - Psest_2095 0.45 +0.1 2,223,531 - Psest_2095 0.59 -0.5 2,223,561 + Psest_2095 0.62 -0.8 2,223,561 + Psest_2095 0.62 -0.8 2,223,561 + Psest_2095 0.62 +1.2 2,223,561 + Psest_2095 0.62 +1.2 2,223,561 + Psest_2095 0.62 -0.7 2,223,561 + Psest_2095 0.62 -1.0 2,223,561 + Psest_2095 0.62 -0.3 2,223,561 + Psest_2095 0.62 -0.6 2,223,562 - Psest_2095 0.62 +1.7 2,223,562 - Psest_2095 0.62 -1.1 2,223,562 - Psest_2095 0.62 +0.2 2,223,562 - Psest_2095 0.62 +0.9 2,223,562 - Psest_2095 0.62 +0.8 2,223,745 + Psest_2095 0.78 +0.2
Or see this region's nucleotide sequence