Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2054 and Psest_2055 are separated by 308 nucleotides Psest_2055 and Psest_2056 overlap by 1 nucleotides Psest_2056 and Psest_2057 are separated by 50 nucleotides
Psest_2054: Psest_2054 - PQQ-dependent dehydrogenase, methanol/ethanol family, at 2,178,167 to 2,180,038
_2054
Psest_2055: Psest_2055 - cytochrome c550 (from data) , at 2,180,347 to 2,180,784
_2055
Psest_2056: Psest_2056 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 2,180,784 to 2,181,698
_2056
Psest_2057: Psest_2057 - Predicted secreted protein, at 2,181,749 to 2,182,495
_2057
Position (kb)
2180
2181 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2179.482 kb on + strand, within Psest_2054 at 2179.575 kb on + strand, within Psest_2054 at 2179.575 kb on + strand, within Psest_2054 at 2179.576 kb on - strand, within Psest_2054 at 2179.576 kb on - strand, within Psest_2054 at 2179.590 kb on + strand, within Psest_2054 at 2179.590 kb on + strand, within Psest_2054 at 2179.590 kb on + strand, within Psest_2054 at 2179.590 kb on + strand, within Psest_2054 at 2179.591 kb on - strand, within Psest_2054 at 2179.591 kb on - strand, within Psest_2054 at 2179.656 kb on + strand, within Psest_2054 at 2179.656 kb on + strand, within Psest_2054 at 2179.723 kb on - strand, within Psest_2054 at 2179.983 kb on + strand at 2179.983 kb on + strand at 2179.984 kb on - strand at 2180.079 kb on + strand at 2180.180 kb on + strand at 2180.180 kb on + strand at 2180.189 kb on + strand at 2180.332 kb on + strand at 2180.332 kb on + strand at 2180.342 kb on + strand at 2180.343 kb on - strand at 2180.353 kb on - strand at 2180.398 kb on - strand, within Psest_2055 at 2180.398 kb on - strand, within Psest_2055 at 2180.551 kb on + strand, within Psest_2055 at 2180.551 kb on + strand, within Psest_2055 at 2180.635 kb on + strand, within Psest_2055 at 2180.635 kb on + strand, within Psest_2055 at 2180.653 kb on + strand, within Psest_2055 at 2180.654 kb on - strand, within Psest_2055 at 2180.654 kb on - strand, within Psest_2055 at 2180.654 kb on - strand, within Psest_2055 at 2180.654 kb on - strand, within Psest_2055 at 2180.654 kb on - strand, within Psest_2055 at 2180.698 kb on + strand, within Psest_2055 at 2180.698 kb on + strand, within Psest_2055 at 2180.699 kb on - strand, within Psest_2055 at 2180.699 kb on - strand, within Psest_2055 at 2180.699 kb on - strand, within Psest_2055 at 2180.755 kb on + strand at 2180.755 kb on + strand at 2180.755 kb on + strand at 2180.755 kb on + strand at 2180.755 kb on + strand at 2180.755 kb on + strand at 2180.755 kb on + strand at 2180.755 kb on + strand at 2180.756 kb on - strand at 2180.756 kb on - strand at 2180.756 kb on - strand at 2180.756 kb on - strand at 2180.756 kb on - strand at 2180.756 kb on - strand at 2180.756 kb on - strand at 2180.756 kb on - strand at 2180.910 kb on + strand, within Psest_2056 at 2180.929 kb on - strand, within Psest_2056 at 2180.930 kb on + strand, within Psest_2056 at 2180.930 kb on + strand, within Psest_2056 at 2180.930 kb on + strand, within Psest_2056 at 2180.931 kb on - strand, within Psest_2056 at 2180.931 kb on - strand, within Psest_2056 at 2180.931 kb on - strand, within Psest_2056 at 2180.931 kb on - strand, within Psest_2056 at 2180.931 kb on - strand, within Psest_2056 at 2180.931 kb on - strand, within Psest_2056 at 2180.934 kb on + strand, within Psest_2056 at 2180.934 kb on + strand, within Psest_2056 at 2180.934 kb on + strand, within Psest_2056 at 2180.934 kb on + strand, within Psest_2056 at 2180.935 kb on - strand, within Psest_2056 at 2181.082 kb on - strand, within Psest_2056 at 2181.144 kb on + strand, within Psest_2056 at 2181.144 kb on + strand, within Psest_2056 at 2181.229 kb on - strand, within Psest_2056 at 2181.318 kb on + strand, within Psest_2056 at 2181.318 kb on + strand, within Psest_2056 at 2181.319 kb on - strand, within Psest_2056 at 2181.478 kb on + strand, within Psest_2056 at 2181.541 kb on + strand, within Psest_2056 at 2181.541 kb on + strand, within Psest_2056 at 2181.542 kb on + strand, within Psest_2056 at 2181.542 kb on - strand, within Psest_2056 at 2181.542 kb on - strand, within Psest_2056 at 2181.542 kb on - strand, within Psest_2056 at 2181.542 kb on - strand, within Psest_2056 at 2181.625 kb on - strand at 2181.625 kb on - strand at 2181.646 kb on - strand at 2181.646 kb on - strand at 2181.664 kb on - strand at 2181.664 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,179,482 + Psest_2054 0.70 +0.9 2,179,575 + Psest_2054 0.75 +1.2 2,179,575 + Psest_2054 0.75 +0.5 2,179,576 - Psest_2054 0.75 -0.4 2,179,576 - Psest_2054 0.75 +0.1 2,179,590 + Psest_2054 0.76 +0.9 2,179,590 + Psest_2054 0.76 +1.9 2,179,590 + Psest_2054 0.76 +1.9 2,179,590 + Psest_2054 0.76 -0.3 2,179,591 - Psest_2054 0.76 +0.0 2,179,591 - Psest_2054 0.76 +0.3 2,179,656 + Psest_2054 0.80 +1.7 2,179,656 + Psest_2054 0.80 +1.5 2,179,723 - Psest_2054 0.83 -0.5 2,179,983 + +1.4 2,179,983 + -0.3 2,179,984 - +0.6 2,180,079 + +0.2 2,180,180 + -1.3 2,180,180 + +0.3 2,180,189 + +0.2 2,180,332 + +1.1 2,180,332 + -0.3 2,180,342 + -0.3 2,180,343 - +2.1 2,180,353 - +0.9 2,180,398 - Psest_2055 0.12 +1.5 2,180,398 - Psest_2055 0.12 -0.4 2,180,551 + Psest_2055 0.47 -0.3 2,180,551 + Psest_2055 0.47 +1.6 2,180,635 + Psest_2055 0.66 +0.2 2,180,635 + Psest_2055 0.66 +0.3 2,180,653 + Psest_2055 0.70 +1.7 2,180,654 - Psest_2055 0.70 -0.3 2,180,654 - Psest_2055 0.70 +1.3 2,180,654 - Psest_2055 0.70 +1.3 2,180,654 - Psest_2055 0.70 +1.4 2,180,654 - Psest_2055 0.70 +1.4 2,180,698 + Psest_2055 0.80 -0.1 2,180,698 + Psest_2055 0.80 +1.3 2,180,699 - Psest_2055 0.80 +1.2 2,180,699 - Psest_2055 0.80 +0.7 2,180,699 - Psest_2055 0.80 -0.5 2,180,755 + +0.6 2,180,755 + +1.6 2,180,755 + +1.0 2,180,755 + +3.0 2,180,755 + +0.1 2,180,755 + +2.0 2,180,755 + +2.1 2,180,755 + +0.6 2,180,756 - +1.3 2,180,756 - +1.6 2,180,756 - +1.7 2,180,756 - +2.5 2,180,756 - +2.0 2,180,756 - +2.2 2,180,756 - +0.9 2,180,756 - +0.4 2,180,910 + Psest_2056 0.14 +1.3 2,180,929 - Psest_2056 0.16 +1.1 2,180,930 + Psest_2056 0.16 +3.6 2,180,930 + Psest_2056 0.16 +0.3 2,180,930 + Psest_2056 0.16 +1.1 2,180,931 - Psest_2056 0.16 -1.2 2,180,931 - Psest_2056 0.16 +0.7 2,180,931 - Psest_2056 0.16 +0.7 2,180,931 - Psest_2056 0.16 +0.9 2,180,931 - Psest_2056 0.16 -0.1 2,180,931 - Psest_2056 0.16 +0.7 2,180,934 + Psest_2056 0.16 -0.7 2,180,934 + Psest_2056 0.16 +1.3 2,180,934 + Psest_2056 0.16 +0.9 2,180,934 + Psest_2056 0.16 +1.2 2,180,935 - Psest_2056 0.17 +0.6 2,181,082 - Psest_2056 0.33 -0.4 2,181,144 + Psest_2056 0.39 +2.3 2,181,144 + Psest_2056 0.39 +1.0 2,181,229 - Psest_2056 0.49 +2.0 2,181,318 + Psest_2056 0.58 +1.6 2,181,318 + Psest_2056 0.58 +0.3 2,181,319 - Psest_2056 0.58 +1.3 2,181,478 + Psest_2056 0.76 +1.1 2,181,541 + Psest_2056 0.83 +0.6 2,181,541 + Psest_2056 0.83 +0.6 2,181,542 + Psest_2056 0.83 +1.6 2,181,542 - Psest_2056 0.83 +0.7 2,181,542 - Psest_2056 0.83 +1.1 2,181,542 - Psest_2056 0.83 +0.5 2,181,542 - Psest_2056 0.83 +3.0 2,181,625 - +0.2 2,181,625 - -0.6 2,181,646 - +0.9 2,181,646 - +0.8 2,181,664 - +0.5 2,181,664 - -0.9
Or see this region's nucleotide sequence