Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2045

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2044 and Psest_2045 are separated by 138 nucleotidesPsest_2045 and Psest_2046 are separated by 381 nucleotidesPsest_2046 and Psest_2047 are separated by 44 nucleotides Psest_2044: Psest_2044 - ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system, at 2,164,274 to 2,165,461 _2044 Psest_2045: Psest_2045 - Methyl-accepting chemotaxis protein, at 2,165,600 to 2,167,774 _2045 Psest_2046: Psest_2046 - hypothetical protein, at 2,168,156 to 2,168,593 _2046 Psest_2047: Psest_2047 - Signal transduction histidine kinase, at 2,168,638 to 2,169,903 _2047 Position (kb) 2165 2166 2167 2168Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2164.641 kb on + strand, within Psest_2044at 2164.719 kb on + strand, within Psest_2044at 2164.728 kb on + strand, within Psest_2044at 2164.729 kb on - strand, within Psest_2044at 2164.773 kb on + strand, within Psest_2044at 2164.774 kb on - strand, within Psest_2044at 2165.226 kb on + strand, within Psest_2044at 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.450 kb on + strandat 2165.451 kb on - strandat 2165.451 kb on - strandat 2165.451 kb on - strandat 2165.451 kb on - strandat 2165.451 kb on - strandat 2165.451 kb on - strandat 2165.451 kb on - strandat 2165.451 kb on - strandat 2165.491 kb on + strandat 2165.491 kb on + strandat 2165.491 kb on + strandat 2165.492 kb on - strandat 2165.492 kb on - strandat 2165.516 kb on + strandat 2165.527 kb on + strandat 2165.714 kb on + strandat 2165.715 kb on - strandat 2165.715 kb on - strandat 2166.202 kb on - strand, within Psest_2045at 2166.202 kb on - strand, within Psest_2045at 2166.365 kb on + strand, within Psest_2045at 2166.482 kb on + strand, within Psest_2045at 2166.482 kb on + strand, within Psest_2045at 2166.482 kb on + strand, within Psest_2045at 2166.482 kb on + strand, within Psest_2045at 2166.483 kb on - strand, within Psest_2045at 2166.483 kb on - strand, within Psest_2045at 2166.483 kb on - strand, within Psest_2045at 2166.483 kb on - strand, within Psest_2045at 2166.483 kb on - strand, within Psest_2045at 2166.483 kb on - strand, within Psest_2045at 2166.483 kb on - strand, within Psest_2045at 2166.483 kb on - strand, within Psest_2045at 2166.668 kb on + strand, within Psest_2045at 2167.069 kb on - strand, within Psest_2045at 2167.158 kb on + strand, within Psest_2045at 2167.158 kb on + strand, within Psest_2045at 2167.158 kb on + strand, within Psest_2045at 2167.159 kb on - strand, within Psest_2045at 2167.159 kb on - strand, within Psest_2045at 2167.175 kb on + strand, within Psest_2045at 2167.176 kb on - strand, within Psest_2045at 2167.176 kb on - strand, within Psest_2045at 2167.209 kb on + strand, within Psest_2045at 2167.210 kb on - strand, within Psest_2045at 2167.257 kb on + strand, within Psest_2045at 2167.257 kb on + strand, within Psest_2045at 2167.258 kb on - strand, within Psest_2045at 2167.404 kb on + strand, within Psest_2045at 2167.404 kb on + strand, within Psest_2045at 2167.405 kb on - strand, within Psest_2045at 2167.405 kb on - strand, within Psest_2045at 2167.584 kb on + strandat 2167.584 kb on + strandat 2167.584 kb on + strandat 2167.585 kb on - strandat 2167.680 kb on + strandat 2167.680 kb on + strandat 2167.680 kb on + strandat 2167.680 kb on + strandat 2167.680 kb on + strandat 2167.700 kb on + strandat 2167.700 kb on + strandat 2167.725 kb on - strandat 2167.725 kb on - strandat 2167.742 kb on + strandat 2167.830 kb on + strandat 2167.831 kb on - strandat 2167.890 kb on + strandat 2167.910 kb on + strandat 2167.910 kb on + strandat 2167.910 kb on + strandat 2167.911 kb on - strandat 2167.911 kb on - strandat 2167.911 kb on - strandat 2167.930 kb on + strandat 2167.936 kb on + strandat 2167.936 kb on + strandat 2167.936 kb on + strandat 2167.937 kb on - strandat 2167.967 kb on + strandat 2167.967 kb on + strandat 2167.967 kb on + strandat 2167.968 kb on - strandat 2167.968 kb on - strandat 2167.968 kb on - strandat 2168.091 kb on + strandat 2168.092 kb on - strandat 2168.272 kb on + strand, within Psest_2046at 2168.318 kb on + strand, within Psest_2046at 2168.318 kb on + strand, within Psest_2046at 2168.342 kb on + strand, within Psest_2046at 2168.443 kb on - strand, within Psest_2046at 2168.717 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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2,164,641 + Psest_2044 0.31 +0.1
2,164,719 + Psest_2044 0.37 +1.2
2,164,728 + Psest_2044 0.38 +1.4
2,164,729 - Psest_2044 0.38 +0.7
2,164,773 + Psest_2044 0.42 +0.7
2,164,774 - Psest_2044 0.42 +1.7
2,165,226 + Psest_2044 0.80 +2.0
2,165,450 + +1.9
2,165,450 + +2.9
2,165,450 + +1.5
2,165,450 + +1.6
2,165,450 + +0.5
2,165,450 + +1.7
2,165,450 + +1.7
2,165,450 + +1.4
2,165,450 + +0.7
2,165,450 + +1.1
2,165,450 + +0.5
2,165,451 - +1.9
2,165,451 - +2.3
2,165,451 - +1.1
2,165,451 - +2.7
2,165,451 - -0.2
2,165,451 - +1.1
2,165,451 - +1.0
2,165,451 - -0.9
2,165,491 + -1.9
2,165,491 + +0.8
2,165,491 + +1.2
2,165,492 - -0.5
2,165,492 - -0.5
2,165,516 + +2.0
2,165,527 + +1.7
2,165,714 + +0.3
2,165,715 - +1.1
2,165,715 - +1.5
2,166,202 - Psest_2045 0.28 -0.1
2,166,202 - Psest_2045 0.28 -0.3
2,166,365 + Psest_2045 0.35 -1.5
2,166,482 + Psest_2045 0.41 +1.3
2,166,482 + Psest_2045 0.41 +0.2
2,166,482 + Psest_2045 0.41 +1.4
2,166,482 + Psest_2045 0.41 -0.7
2,166,483 - Psest_2045 0.41 +0.2
2,166,483 - Psest_2045 0.41 -0.5
2,166,483 - Psest_2045 0.41 +0.0
2,166,483 - Psest_2045 0.41 +1.0
2,166,483 - Psest_2045 0.41 +0.2
2,166,483 - Psest_2045 0.41 +1.1
2,166,483 - Psest_2045 0.41 +0.0
2,166,483 - Psest_2045 0.41 -0.5
2,166,668 + Psest_2045 0.49 +0.3
2,167,069 - Psest_2045 0.68 -0.7
2,167,158 + Psest_2045 0.72 +0.3
2,167,158 + Psest_2045 0.72 -0.2
2,167,158 + Psest_2045 0.72 +0.7
2,167,159 - Psest_2045 0.72 +1.2
2,167,159 - Psest_2045 0.72 +0.8
2,167,175 + Psest_2045 0.72 -1.0
2,167,176 - Psest_2045 0.72 -0.7
2,167,176 - Psest_2045 0.72 +0.8
2,167,209 + Psest_2045 0.74 -0.5
2,167,210 - Psest_2045 0.74 +0.4
2,167,257 + Psest_2045 0.76 +0.6
2,167,257 + Psest_2045 0.76 +0.7
2,167,258 - Psest_2045 0.76 -1.5
2,167,404 + Psest_2045 0.83 -0.0
2,167,404 + Psest_2045 0.83 -0.3
2,167,405 - Psest_2045 0.83 +1.3
2,167,405 - Psest_2045 0.83 +0.8
2,167,584 + +0.5
2,167,584 + +0.6
2,167,584 + +1.0
2,167,585 - +0.9
2,167,680 + +0.4
2,167,680 + -1.1
2,167,680 + +0.3
2,167,680 + -0.3
2,167,680 + -0.0
2,167,700 + +1.0
2,167,700 + -0.5
2,167,725 - +1.4
2,167,725 - +1.2
2,167,742 + -0.8
2,167,830 + -0.7
2,167,831 - +0.1
2,167,890 + -0.8
2,167,910 + -0.4
2,167,910 + -0.0
2,167,910 + +2.2
2,167,911 - -0.5
2,167,911 - +1.0
2,167,911 - +0.5
2,167,930 + +0.7
2,167,936 + +0.3
2,167,936 + -0.1
2,167,936 + -1.1
2,167,937 - -1.3
2,167,967 + +1.5
2,167,967 + +0.8
2,167,967 + -1.0
2,167,968 - -1.3
2,167,968 - +0.5
2,167,968 - -0.5
2,168,091 + -1.0
2,168,092 - +0.9
2,168,272 + Psest_2046 0.26 -0.0
2,168,318 + Psest_2046 0.37 +0.4
2,168,318 + Psest_2046 0.37 -0.1
2,168,342 + Psest_2046 0.42 +0.7
2,168,443 - Psest_2046 0.66 +2.8
2,168,717 + +2.0

Or see this region's nucleotide sequence