Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0198 and Psest_0199 are separated by 598 nucleotides Psest_0199 and Psest_0200 are separated by 281 nucleotides Psest_0200 and Psest_0201 are separated by 120 nucleotides
Psest_0198: Psest_0198 - TRAP transporter solute receptor, TAXI family, at 195,463 to 196,428
_0198
Psest_0199: Psest_0199 - PAS domain S-box, at 197,027 to 198,613
_0199
Psest_0200: Psest_0200 - hypothetical protein, at 198,895 to 199,059
_0200
Psest_0201: Psest_0201 - PAS domain S-box, at 199,180 to 200,760
_0201
Position (kb) 197
198
199 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 196.061 kb on - strand, within Psest_0198 at 196.155 kb on - strand, within Psest_0198 at 196.155 kb on - strand, within Psest_0198 at 196.155 kb on - strand, within Psest_0198 at 196.304 kb on + strand, within Psest_0198 at 196.305 kb on - strand, within Psest_0198 at 196.305 kb on - strand, within Psest_0198 at 196.307 kb on + strand, within Psest_0198 at 196.308 kb on - strand, within Psest_0198 at 196.308 kb on - strand, within Psest_0198 at 196.361 kb on - strand at 196.499 kb on - strand at 196.499 kb on - strand at 196.556 kb on + strand at 196.574 kb on + strand at 196.575 kb on - strand at 196.575 kb on - strand at 196.621 kb on + strand at 196.622 kb on - strand at 196.622 kb on - strand at 196.622 kb on - strand at 196.702 kb on - strand at 196.907 kb on + strand at 197.120 kb on + strand at 197.120 kb on + strand at 197.121 kb on - strand at 197.121 kb on - strand at 197.121 kb on - strand at 197.121 kb on - strand at 197.121 kb on - strand at 197.121 kb on - strand at 197.121 kb on - strand at 197.414 kb on + strand, within Psest_0199 at 197.414 kb on + strand, within Psest_0199 at 197.415 kb on - strand, within Psest_0199 at 197.415 kb on - strand, within Psest_0199 at 197.415 kb on - strand, within Psest_0199 at 197.415 kb on - strand, within Psest_0199 at 197.415 kb on - strand, within Psest_0199 at 197.415 kb on - strand, within Psest_0199 at 197.687 kb on + strand, within Psest_0199 at 197.687 kb on + strand, within Psest_0199 at 197.688 kb on - strand, within Psest_0199 at 197.708 kb on + strand, within Psest_0199 at 198.001 kb on + strand, within Psest_0199 at 198.213 kb on + strand, within Psest_0199 at 198.300 kb on + strand, within Psest_0199 at 198.300 kb on + strand, within Psest_0199 at 198.300 kb on + strand, within Psest_0199 at 198.300 kb on + strand, within Psest_0199 at 198.301 kb on - strand, within Psest_0199 at 198.301 kb on - strand, within Psest_0199 at 198.301 kb on - strand, within Psest_0199 at 198.301 kb on - strand, within Psest_0199 at 198.331 kb on + strand, within Psest_0199 at 198.332 kb on - strand, within Psest_0199 at 198.576 kb on + strand at 198.653 kb on + strand at 198.660 kb on + strand at 198.699 kb on - strand at 198.765 kb on + strand at 198.765 kb on + strand at 198.765 kb on + strand at 198.765 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.876 kb on - strand at 198.876 kb on - strand at 198.876 kb on - strand at 198.876 kb on - strand at 198.876 kb on - strand at 199.083 kb on + strand at 199.122 kb on - strand at 199.179 kb on + strand at 199.179 kb on + strand at 199.180 kb on - strand at 199.180 kb on - strand at 199.180 kb on - strand at 199.180 kb on - strand at 199.236 kb on + strand at 199.274 kb on - strand at 199.274 kb on - strand at 199.274 kb on - strand at 199.510 kb on + strand, within Psest_0201 at 199.511 kb on - strand, within Psest_0201 at 199.511 kb on - strand, within Psest_0201 at 199.568 kb on - strand, within Psest_0201
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 196,061 - Psest_0198 0.62 +0.3 196,155 - Psest_0198 0.72 -1.0 196,155 - Psest_0198 0.72 -1.8 196,155 - Psest_0198 0.72 -1.0 196,304 + Psest_0198 0.87 +1.0 196,305 - Psest_0198 0.87 +2.0 196,305 - Psest_0198 0.87 -0.0 196,307 + Psest_0198 0.87 -1.0 196,308 - Psest_0198 0.87 -1.9 196,308 - Psest_0198 0.87 -2.4 196,361 - -0.0 196,499 - +0.7 196,499 - +2.2 196,556 + -1.0 196,574 + +1.4 196,575 - +0.4 196,575 - -0.4 196,621 + -0.6 196,622 - +0.3 196,622 - +0.5 196,622 - +0.3 196,702 - -0.4 196,907 + -1.0 197,120 + -0.0 197,120 + -2.0 197,121 - +0.3 197,121 - +0.5 197,121 - -0.0 197,121 - +1.7 197,121 - +0.5 197,121 - +1.0 197,121 - +0.2 197,414 + Psest_0199 0.24 +1.0 197,414 + Psest_0199 0.24 +1.0 197,415 - Psest_0199 0.24 +1.9 197,415 - Psest_0199 0.24 +1.0 197,415 - Psest_0199 0.24 +0.2 197,415 - Psest_0199 0.24 -0.6 197,415 - Psest_0199 0.24 +0.6 197,415 - Psest_0199 0.24 +1.7 197,687 + Psest_0199 0.42 +1.0 197,687 + Psest_0199 0.42 -0.0 197,688 - Psest_0199 0.42 +2.0 197,708 + Psest_0199 0.43 +0.6 198,001 + Psest_0199 0.61 +2.0 198,213 + Psest_0199 0.75 +0.3 198,300 + Psest_0199 0.80 +1.4 198,300 + Psest_0199 0.80 +1.4 198,300 + Psest_0199 0.80 -0.5 198,300 + Psest_0199 0.80 +2.0 198,301 - Psest_0199 0.80 -0.0 198,301 - Psest_0199 0.80 +0.7 198,301 - Psest_0199 0.80 +1.2 198,301 - Psest_0199 0.80 -0.2 198,331 + Psest_0199 0.82 +0.6 198,332 - Psest_0199 0.82 +1.5 198,576 + +1.4 198,653 + +2.0 198,660 + +3.0 198,699 - +0.2 198,765 + +1.0 198,765 + +0.3 198,765 + +1.5 198,765 + +0.5 198,769 + +1.3 198,769 + +1.2 198,769 + +1.8 198,769 + +1.2 198,769 + +1.2 198,769 + -1.0 198,770 - +0.7 198,770 - +1.4 198,770 - +1.0 198,770 - +1.0 198,770 - -1.0 198,801 + +1.2 198,801 + +2.0 198,801 + -1.0 198,801 + +1.0 198,801 + +3.0 198,801 + +1.1 198,801 + +0.2 198,801 + +3.4 198,801 + +1.0 198,801 + +2.0 198,875 + -0.0 198,875 + +1.0 198,875 + +0.8 198,875 + +1.4 198,875 + +4.9 198,875 + +1.7 198,875 + +0.5 198,876 - +0.3 198,876 - -0.0 198,876 - +1.2 198,876 - +1.8 198,876 - +0.1 199,083 + +1.0 199,122 - +0.4 199,179 + +0.2 199,179 + -0.0 199,180 - -1.0 199,180 - +2.0 199,180 - -1.0 199,180 - -0.6 199,236 + +0.4 199,274 - +2.0 199,274 - +1.0 199,274 - -1.0 199,510 + Psest_0201 0.21 +2.5 199,511 - Psest_0201 0.21 +0.5 199,511 - Psest_0201 0.21 +1.0 199,568 - Psest_0201 0.25 +1.5
Or see this region's nucleotide sequence