Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1945 and Psest_1946 are separated by 158 nucleotides Psest_1946 and Psest_1947 are separated by 111 nucleotides Psest_1947 and Psest_1948 are separated by 92 nucleotides Psest_1948 and Psest_1949 are separated by 356 nucleotides
Psest_1945: Psest_1945 - hypothetical protein, at 2,062,288 to 2,063,202
_1945
Psest_1946: Psest_1946 - Protein of unknown function (DUF2835)., at 2,063,361 to 2,063,582
_1946
Psest_1947: Psest_1947 - dihydroorotate dehydrogenase, subfamily 2, at 2,063,694 to 2,064,725
_1947
Psest_1948: Psest_1948 - Ribosome modulation factor, at 2,064,818 to 2,065,033
_1948
Psest_1949: Psest_1949 - Predicted N6-adenine-specific DNA methylase, at 2,065,390 to 2,067,570
_1949
Position (kb)
2063
2064
2065 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2062.713 kb on + strand, within Psest_1945 at 2062.790 kb on + strand, within Psest_1945 at 2062.790 kb on + strand, within Psest_1945 at 2062.790 kb on + strand, within Psest_1945 at 2062.791 kb on - strand, within Psest_1945 at 2063.341 kb on + strand at 2063.341 kb on + strand at 2063.341 kb on + strand at 2063.367 kb on + strand at 2063.368 kb on - strand at 2063.368 kb on - strand at 2063.368 kb on - strand at 2063.413 kb on + strand, within Psest_1946 at 2063.413 kb on + strand, within Psest_1946 at 2063.413 kb on + strand, within Psest_1946 at 2063.414 kb on - strand, within Psest_1946 at 2063.414 kb on - strand, within Psest_1946 at 2063.416 kb on - strand, within Psest_1946 at 2063.416 kb on - strand, within Psest_1946 at 2063.517 kb on + strand, within Psest_1946 at 2063.517 kb on + strand, within Psest_1946 at 2063.517 kb on + strand, within Psest_1946 at 2063.518 kb on - strand, within Psest_1946 at 2063.518 kb on - strand, within Psest_1946 at 2063.580 kb on + strand at 2063.580 kb on + strand at 2063.693 kb on + strand at 2063.693 kb on + strand at 2063.693 kb on + strand at 2063.693 kb on + strand at 2063.693 kb on + strand at 2063.693 kb on + strand at 2063.693 kb on + strand at 2063.693 kb on + strand at 2063.693 kb on + strand at 2063.693 kb on + strand at 2063.697 kb on + strand at 2063.697 kb on + strand at 2063.697 kb on + strand at 2063.697 kb on + strand at 2063.728 kb on + strand at 2063.864 kb on - strand, within Psest_1947 at 2064.049 kb on + strand, within Psest_1947 at 2064.177 kb on + strand, within Psest_1947 at 2064.192 kb on + strand, within Psest_1947 at 2064.192 kb on + strand, within Psest_1947 at 2064.192 kb on + strand, within Psest_1947 at 2064.192 kb on + strand, within Psest_1947 at 2064.465 kb on + strand, within Psest_1947 at 2064.653 kb on + strand at 2064.653 kb on + strand at 2064.657 kb on + strand at 2064.657 kb on + strand at 2064.657 kb on + strand at 2064.657 kb on + strand at 2064.658 kb on - strand at 2064.767 kb on - strand at 2064.847 kb on + strand, within Psest_1948 at 2064.848 kb on - strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.971 kb on + strand, within Psest_1948 at 2064.972 kb on - strand, within Psest_1948 at 2064.972 kb on - strand, within Psest_1948 at 2064.972 kb on - strand, within Psest_1948 at 2064.972 kb on - strand, within Psest_1948 at 2064.972 kb on - strand, within Psest_1948 at 2064.972 kb on - strand, within Psest_1948 at 2064.972 kb on - strand, within Psest_1948 at 2064.972 kb on - strand, within Psest_1948 at 2064.972 kb on - strand, within Psest_1948 at 2064.972 kb on - strand, within Psest_1948 at 2064.972 kb on - strand, within Psest_1948 at 2064.972 kb on - strand, within Psest_1948 at 2065.094 kb on + strand at 2065.103 kb on + strand at 2065.103 kb on + strand at 2065.104 kb on - strand at 2065.213 kb on + strand at 2065.213 kb on + strand at 2065.213 kb on + strand at 2065.213 kb on + strand at 2065.213 kb on + strand at 2065.213 kb on + strand at 2065.213 kb on + strand at 2065.214 kb on - strand at 2065.214 kb on - strand at 2065.214 kb on - strand at 2065.214 kb on - strand at 2065.214 kb on - strand at 2065.227 kb on - strand at 2065.251 kb on + strand at 2065.251 kb on + strand at 2065.500 kb on + strand at 2065.501 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,062,713 + Psest_1945 0.46 -1.3 2,062,790 + Psest_1945 0.55 -0.4 2,062,790 + Psest_1945 0.55 +2.3 2,062,790 + Psest_1945 0.55 +0.8 2,062,791 - Psest_1945 0.55 -0.4 2,063,341 + -1.3 2,063,341 + +1.3 2,063,341 + +0.1 2,063,367 + -0.5 2,063,368 - -0.1 2,063,368 - +1.6 2,063,368 - +1.8 2,063,413 + Psest_1946 0.23 -0.3 2,063,413 + Psest_1946 0.23 -0.9 2,063,413 + Psest_1946 0.23 -2.5 2,063,414 - Psest_1946 0.24 -2.1 2,063,414 - Psest_1946 0.24 +1.1 2,063,416 - Psest_1946 0.25 +0.3 2,063,416 - Psest_1946 0.25 -1.2 2,063,517 + Psest_1946 0.70 -0.9 2,063,517 + Psest_1946 0.70 +0.3 2,063,517 + Psest_1946 0.70 -2.1 2,063,518 - Psest_1946 0.71 +0.3 2,063,518 - Psest_1946 0.71 -1.8 2,063,580 + -0.3 2,063,580 + +0.4 2,063,693 + +0.1 2,063,693 + -2.3 2,063,693 + -2.3 2,063,693 + -0.9 2,063,693 + -1.8 2,063,693 + -0.9 2,063,693 + -2.5 2,063,693 + +0.1 2,063,693 + -1.3 2,063,693 + -1.5 2,063,697 + -1.3 2,063,697 + -0.9 2,063,697 + +0.1 2,063,697 + -0.5 2,063,728 + -0.5 2,063,864 - Psest_1947 0.16 -1.5 2,064,049 + Psest_1947 0.34 -1.3 2,064,177 + Psest_1947 0.47 -1.5 2,064,192 + Psest_1947 0.48 -1.7 2,064,192 + Psest_1947 0.48 -2.4 2,064,192 + Psest_1947 0.48 +1.1 2,064,192 + Psest_1947 0.48 -1.5 2,064,465 + Psest_1947 0.75 -0.9 2,064,653 + -0.9 2,064,653 + +0.1 2,064,657 + -1.3 2,064,657 + -1.9 2,064,657 + -0.9 2,064,657 + -1.4 2,064,658 - +0.5 2,064,767 - +1.2 2,064,847 + Psest_1948 0.13 -0.5 2,064,848 - Psest_1948 0.14 +0.1 2,064,971 + Psest_1948 0.71 +0.2 2,064,971 + Psest_1948 0.71 -1.2 2,064,971 + Psest_1948 0.71 -0.5 2,064,971 + Psest_1948 0.71 -1.1 2,064,971 + Psest_1948 0.71 +0.3 2,064,971 + Psest_1948 0.71 -0.4 2,064,971 + Psest_1948 0.71 -0.3 2,064,971 + Psest_1948 0.71 +0.1 2,064,971 + Psest_1948 0.71 -0.2 2,064,971 + Psest_1948 0.71 -0.0 2,064,971 + Psest_1948 0.71 -0.4 2,064,971 + Psest_1948 0.71 +0.6 2,064,971 + Psest_1948 0.71 +0.5 2,064,971 + Psest_1948 0.71 -1.4 2,064,971 + Psest_1948 0.71 -0.2 2,064,971 + Psest_1948 0.71 -2.0 2,064,971 + Psest_1948 0.71 -0.1 2,064,972 - Psest_1948 0.71 +0.1 2,064,972 - Psest_1948 0.71 -1.5 2,064,972 - Psest_1948 0.71 -0.1 2,064,972 - Psest_1948 0.71 -1.6 2,064,972 - Psest_1948 0.71 -0.9 2,064,972 - Psest_1948 0.71 -0.7 2,064,972 - Psest_1948 0.71 -0.1 2,064,972 - Psest_1948 0.71 +1.1 2,064,972 - Psest_1948 0.71 +1.3 2,064,972 - Psest_1948 0.71 -0.9 2,064,972 - Psest_1948 0.71 -1.5 2,064,972 - Psest_1948 0.71 +1.8 2,065,094 + +0.4 2,065,103 + -0.7 2,065,103 + -0.1 2,065,104 - +0.6 2,065,213 + -2.3 2,065,213 + -1.7 2,065,213 + -0.2 2,065,213 + -0.3 2,065,213 + -1.4 2,065,213 + -1.2 2,065,213 + -0.9 2,065,214 - -1.7 2,065,214 - -0.5 2,065,214 - +1.1 2,065,214 - -0.7 2,065,214 - -0.3 2,065,227 - +1.1 2,065,251 + -0.9 2,065,251 + +0.3 2,065,500 + -0.1 2,065,501 - -0.1
Or see this region's nucleotide sequence