Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1941 and Psest_1942 overlap by 4 nucleotides Psest_1942 and Psest_1943 overlap by 1 nucleotides Psest_1943 and Psest_1944 are separated by 211 nucleotides
Psest_1941: Psest_1941 - hypothetical protein, at 2,054,675 to 2,055,169
_1941
Psest_1942: Psest_1942 - Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain), at 2,055,166 to 2,056,128
_1942
Psest_1943: Psest_1943 - MoxR-like ATPases, at 2,056,128 to 2,057,087
_1943
Psest_1944: Psest_1944 - NAD-specific glutamate dehydrogenase (EC 1.4.1.2), large form (from data) , at 2,057,299 to 2,062,149
_1944
Position (kb)
2056
2057
2058 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2055.824 kb on + strand, within Psest_1942 at 2055.824 kb on + strand, within Psest_1942 at 2055.824 kb on + strand, within Psest_1942 at 2055.824 kb on + strand, within Psest_1942 at 2055.824 kb on + strand, within Psest_1942 at 2055.824 kb on + strand, within Psest_1942 at 2055.824 kb on + strand, within Psest_1942 at 2055.824 kb on + strand, within Psest_1942 at 2055.824 kb on + strand, within Psest_1942 at 2055.825 kb on - strand, within Psest_1942 at 2055.825 kb on - strand, within Psest_1942 at 2055.825 kb on - strand, within Psest_1942 at 2055.825 kb on - strand, within Psest_1942 at 2055.825 kb on - strand, within Psest_1942 at 2055.825 kb on - strand, within Psest_1942 at 2055.825 kb on - strand, within Psest_1942 at 2055.825 kb on - strand, within Psest_1942 at 2055.825 kb on - strand, within Psest_1942 at 2055.861 kb on + strand, within Psest_1942 at 2055.934 kb on + strand, within Psest_1942 at 2055.934 kb on + strand, within Psest_1942 at 2055.934 kb on + strand, within Psest_1942 at 2055.934 kb on + strand, within Psest_1942 at 2055.934 kb on + strand, within Psest_1942 at 2055.934 kb on + strand, within Psest_1942 at 2055.934 kb on + strand, within Psest_1942 at 2055.935 kb on - strand, within Psest_1942 at 2055.935 kb on - strand, within Psest_1942 at 2055.935 kb on - strand, within Psest_1942 at 2055.935 kb on - strand, within Psest_1942 at 2056.343 kb on - strand, within Psest_1943 at 2056.407 kb on + strand, within Psest_1943 at 2056.407 kb on + strand, within Psest_1943 at 2056.407 kb on + strand, within Psest_1943 at 2056.414 kb on + strand, within Psest_1943 at 2056.414 kb on + strand, within Psest_1943 at 2056.438 kb on + strand, within Psest_1943 at 2056.438 kb on + strand, within Psest_1943 at 2056.438 kb on + strand, within Psest_1943 at 2056.438 kb on + strand, within Psest_1943 at 2056.438 kb on + strand, within Psest_1943 at 2056.438 kb on + strand, within Psest_1943 at 2056.438 kb on + strand, within Psest_1943 at 2056.438 kb on + strand, within Psest_1943 at 2056.438 kb on + strand, within Psest_1943 at 2056.438 kb on + strand, within Psest_1943 at 2056.439 kb on - strand, within Psest_1943 at 2056.439 kb on - strand, within Psest_1943 at 2056.439 kb on - strand, within Psest_1943 at 2056.624 kb on + strand, within Psest_1943 at 2056.625 kb on - strand, within Psest_1943 at 2056.687 kb on + strand, within Psest_1943 at 2056.687 kb on + strand, within Psest_1943 at 2056.687 kb on + strand, within Psest_1943 at 2056.688 kb on - strand, within Psest_1943 at 2056.691 kb on + strand, within Psest_1943 at 2056.692 kb on - strand, within Psest_1943 at 2056.840 kb on + strand, within Psest_1943 at 2056.840 kb on + strand, within Psest_1943 at 2056.976 kb on + strand, within Psest_1943 at 2056.976 kb on + strand, within Psest_1943 at 2056.976 kb on + strand, within Psest_1943 at 2057.296 kb on + strand at 2057.296 kb on + strand at 2057.297 kb on - strand at 2057.297 kb on - strand at 2057.297 kb on - strand at 2057.297 kb on - strand at 2057.297 kb on - strand at 2057.297 kb on - strand at 2057.358 kb on - strand at 2057.369 kb on + strand at 2057.369 kb on + strand at 2057.369 kb on + strand at 2057.369 kb on + strand at 2057.369 kb on + strand at 2057.370 kb on - strand at 2057.370 kb on - strand at 2057.370 kb on - strand at 2057.370 kb on - strand at 2057.370 kb on - strand at 2057.370 kb on - strand at 2057.370 kb on - strand at 2057.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,055,824 + Psest_1942 0.68 -1.9 2,055,824 + Psest_1942 0.68 -1.0 2,055,824 + Psest_1942 0.68 +0.0 2,055,824 + Psest_1942 0.68 -3.3 2,055,824 + Psest_1942 0.68 -1.8 2,055,824 + Psest_1942 0.68 -1.1 2,055,824 + Psest_1942 0.68 -2.3 2,055,824 + Psest_1942 0.68 -1.1 2,055,824 + Psest_1942 0.68 -2.3 2,055,825 - Psest_1942 0.68 -1.8 2,055,825 - Psest_1942 0.68 -0.3 2,055,825 - Psest_1942 0.68 -2.0 2,055,825 - Psest_1942 0.68 -2.7 2,055,825 - Psest_1942 0.68 -2.1 2,055,825 - Psest_1942 0.68 -1.0 2,055,825 - Psest_1942 0.68 -1.0 2,055,825 - Psest_1942 0.68 -1.0 2,055,825 - Psest_1942 0.68 -0.3 2,055,861 + Psest_1942 0.72 -2.3 2,055,934 + Psest_1942 0.80 -1.5 2,055,934 + Psest_1942 0.80 -2.4 2,055,934 + Psest_1942 0.80 -0.8 2,055,934 + Psest_1942 0.80 +0.6 2,055,934 + Psest_1942 0.80 -1.0 2,055,934 + Psest_1942 0.80 -2.1 2,055,934 + Psest_1942 0.80 -2.1 2,055,935 - Psest_1942 0.80 -1.3 2,055,935 - Psest_1942 0.80 -0.3 2,055,935 - Psest_1942 0.80 -1.0 2,055,935 - Psest_1942 0.80 -1.0 2,056,343 - Psest_1943 0.22 +2.1 2,056,407 + Psest_1943 0.29 -1.9 2,056,407 + Psest_1943 0.29 -3.6 2,056,407 + Psest_1943 0.29 -1.5 2,056,414 + Psest_1943 0.30 -3.7 2,056,414 + Psest_1943 0.30 -1.5 2,056,438 + Psest_1943 0.32 -2.1 2,056,438 + Psest_1943 0.32 -0.4 2,056,438 + Psest_1943 0.32 -1.7 2,056,438 + Psest_1943 0.32 -1.2 2,056,438 + Psest_1943 0.32 +1.1 2,056,438 + Psest_1943 0.32 +1.1 2,056,438 + Psest_1943 0.32 -2.2 2,056,438 + Psest_1943 0.32 -2.5 2,056,438 + Psest_1943 0.32 -1.9 2,056,438 + Psest_1943 0.32 -1.5 2,056,439 - Psest_1943 0.32 -2.1 2,056,439 - Psest_1943 0.32 +1.1 2,056,439 - Psest_1943 0.32 -0.7 2,056,624 + Psest_1943 0.52 -2.1 2,056,625 - Psest_1943 0.52 -2.9 2,056,687 + Psest_1943 0.58 -2.0 2,056,687 + Psest_1943 0.58 -1.5 2,056,687 + Psest_1943 0.58 -1.3 2,056,688 - Psest_1943 0.58 -1.9 2,056,691 + Psest_1943 0.59 -2.1 2,056,692 - Psest_1943 0.59 -1.5 2,056,840 + Psest_1943 0.74 -2.4 2,056,840 + Psest_1943 0.74 +0.7 2,056,976 + Psest_1943 0.88 -3.6 2,056,976 + Psest_1943 0.88 -2.4 2,056,976 + Psest_1943 0.88 -2.9 2,057,296 + -0.4 2,057,296 + -1.2 2,057,297 - +0.7 2,057,297 - -2.1 2,057,297 - -0.0 2,057,297 - -1.3 2,057,297 - +0.3 2,057,297 - +0.1 2,057,358 - -0.5 2,057,369 + -1.5 2,057,369 + -0.3 2,057,369 + +0.1 2,057,369 + -1.3 2,057,369 + -1.7 2,057,370 - -0.9 2,057,370 - -2.6 2,057,370 - -0.6 2,057,370 - +0.5 2,057,370 - -2.3 2,057,370 - +0.8 2,057,370 - -0.5 2,057,370 - +1.1
Or see this region's nucleotide sequence