Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1942

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1940 and Psest_1941 overlap by 8 nucleotidesPsest_1941 and Psest_1942 overlap by 4 nucleotidesPsest_1942 and Psest_1943 overlap by 1 nucleotides Psest_1940: Psest_1940 - Uncharacterized protein containing a von Willebrand factor type A (vWA) domain, at 2,053,663 to 2,054,682 _1940 Psest_1941: Psest_1941 - hypothetical protein, at 2,054,675 to 2,055,169 _1941 Psest_1942: Psest_1942 - Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain), at 2,055,166 to 2,056,128 _1942 Psest_1943: Psest_1943 - MoxR-like ATPases, at 2,056,128 to 2,057,087 _1943 Position (kb) 2055 2056 2057Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2054.246 kb on + strand, within Psest_1940at 2054.247 kb on - strand, within Psest_1940at 2054.247 kb on - strand, within Psest_1940at 2054.389 kb on + strand, within Psest_1940at 2054.389 kb on + strand, within Psest_1940at 2054.390 kb on - strand, within Psest_1940at 2054.390 kb on - strand, within Psest_1940at 2054.435 kb on - strand, within Psest_1940at 2054.757 kb on + strand, within Psest_1941at 2055.824 kb on + strand, within Psest_1942at 2055.824 kb on + strand, within Psest_1942at 2055.824 kb on + strand, within Psest_1942at 2055.824 kb on + strand, within Psest_1942at 2055.824 kb on + strand, within Psest_1942at 2055.824 kb on + strand, within Psest_1942at 2055.824 kb on + strand, within Psest_1942at 2055.824 kb on + strand, within Psest_1942at 2055.824 kb on + strand, within Psest_1942at 2055.825 kb on - strand, within Psest_1942at 2055.825 kb on - strand, within Psest_1942at 2055.825 kb on - strand, within Psest_1942at 2055.825 kb on - strand, within Psest_1942at 2055.825 kb on - strand, within Psest_1942at 2055.825 kb on - strand, within Psest_1942at 2055.825 kb on - strand, within Psest_1942at 2055.825 kb on - strand, within Psest_1942at 2055.825 kb on - strand, within Psest_1942at 2055.861 kb on + strand, within Psest_1942at 2055.934 kb on + strand, within Psest_1942at 2055.934 kb on + strand, within Psest_1942at 2055.934 kb on + strand, within Psest_1942at 2055.934 kb on + strand, within Psest_1942at 2055.934 kb on + strand, within Psest_1942at 2055.934 kb on + strand, within Psest_1942at 2055.934 kb on + strand, within Psest_1942at 2055.935 kb on - strand, within Psest_1942at 2055.935 kb on - strand, within Psest_1942at 2055.935 kb on - strand, within Psest_1942at 2055.935 kb on - strand, within Psest_1942at 2056.343 kb on - strand, within Psest_1943at 2056.407 kb on + strand, within Psest_1943at 2056.407 kb on + strand, within Psest_1943at 2056.407 kb on + strand, within Psest_1943at 2056.414 kb on + strand, within Psest_1943at 2056.414 kb on + strand, within Psest_1943at 2056.438 kb on + strand, within Psest_1943at 2056.438 kb on + strand, within Psest_1943at 2056.438 kb on + strand, within Psest_1943at 2056.438 kb on + strand, within Psest_1943at 2056.438 kb on + strand, within Psest_1943at 2056.438 kb on + strand, within Psest_1943at 2056.438 kb on + strand, within Psest_1943at 2056.438 kb on + strand, within Psest_1943at 2056.438 kb on + strand, within Psest_1943at 2056.438 kb on + strand, within Psest_1943at 2056.439 kb on - strand, within Psest_1943at 2056.439 kb on - strand, within Psest_1943at 2056.439 kb on - strand, within Psest_1943at 2056.624 kb on + strand, within Psest_1943at 2056.625 kb on - strand, within Psest_1943at 2056.687 kb on + strand, within Psest_1943at 2056.687 kb on + strand, within Psest_1943at 2056.687 kb on + strand, within Psest_1943at 2056.688 kb on - strand, within Psest_1943at 2056.691 kb on + strand, within Psest_1943at 2056.692 kb on - strand, within Psest_1943at 2056.840 kb on + strand, within Psest_1943at 2056.840 kb on + strand, within Psest_1943at 2056.976 kb on + strand, within Psest_1943at 2056.976 kb on + strand, within Psest_1943at 2056.976 kb on + strand, within Psest_1943

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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2,054,246 + Psest_1940 0.57 -2.2
2,054,247 - Psest_1940 0.57 -1.0
2,054,247 - Psest_1940 0.57 -0.1
2,054,389 + Psest_1940 0.71 -0.5
2,054,389 + Psest_1940 0.71 -3.7
2,054,390 - Psest_1940 0.71 -1.0
2,054,390 - Psest_1940 0.71 -1.5
2,054,435 - Psest_1940 0.76 -1.8
2,054,757 + Psest_1941 0.17 -0.1
2,055,824 + Psest_1942 0.68 -1.9
2,055,824 + Psest_1942 0.68 -1.0
2,055,824 + Psest_1942 0.68 +0.0
2,055,824 + Psest_1942 0.68 -3.3
2,055,824 + Psest_1942 0.68 -1.8
2,055,824 + Psest_1942 0.68 -1.1
2,055,824 + Psest_1942 0.68 -2.3
2,055,824 + Psest_1942 0.68 -1.1
2,055,824 + Psest_1942 0.68 -2.3
2,055,825 - Psest_1942 0.68 -1.8
2,055,825 - Psest_1942 0.68 -0.3
2,055,825 - Psest_1942 0.68 -2.0
2,055,825 - Psest_1942 0.68 -2.7
2,055,825 - Psest_1942 0.68 -2.1
2,055,825 - Psest_1942 0.68 -1.0
2,055,825 - Psest_1942 0.68 -1.0
2,055,825 - Psest_1942 0.68 -1.0
2,055,825 - Psest_1942 0.68 -0.3
2,055,861 + Psest_1942 0.72 -2.3
2,055,934 + Psest_1942 0.80 -1.5
2,055,934 + Psest_1942 0.80 -2.4
2,055,934 + Psest_1942 0.80 -0.8
2,055,934 + Psest_1942 0.80 +0.6
2,055,934 + Psest_1942 0.80 -1.0
2,055,934 + Psest_1942 0.80 -2.1
2,055,934 + Psest_1942 0.80 -2.1
2,055,935 - Psest_1942 0.80 -1.3
2,055,935 - Psest_1942 0.80 -0.3
2,055,935 - Psest_1942 0.80 -1.0
2,055,935 - Psest_1942 0.80 -1.0
2,056,343 - Psest_1943 0.22 +2.1
2,056,407 + Psest_1943 0.29 -1.9
2,056,407 + Psest_1943 0.29 -3.6
2,056,407 + Psest_1943 0.29 -1.5
2,056,414 + Psest_1943 0.30 -3.7
2,056,414 + Psest_1943 0.30 -1.5
2,056,438 + Psest_1943 0.32 -2.1
2,056,438 + Psest_1943 0.32 -0.4
2,056,438 + Psest_1943 0.32 -1.7
2,056,438 + Psest_1943 0.32 -1.2
2,056,438 + Psest_1943 0.32 +1.1
2,056,438 + Psest_1943 0.32 +1.1
2,056,438 + Psest_1943 0.32 -2.2
2,056,438 + Psest_1943 0.32 -2.5
2,056,438 + Psest_1943 0.32 -1.9
2,056,438 + Psest_1943 0.32 -1.5
2,056,439 - Psest_1943 0.32 -2.1
2,056,439 - Psest_1943 0.32 +1.1
2,056,439 - Psest_1943 0.32 -0.7
2,056,624 + Psest_1943 0.52 -2.1
2,056,625 - Psest_1943 0.52 -2.9
2,056,687 + Psest_1943 0.58 -2.0
2,056,687 + Psest_1943 0.58 -1.5
2,056,687 + Psest_1943 0.58 -1.3
2,056,688 - Psest_1943 0.58 -1.9
2,056,691 + Psest_1943 0.59 -2.1
2,056,692 - Psest_1943 0.59 -1.5
2,056,840 + Psest_1943 0.74 -2.4
2,056,840 + Psest_1943 0.74 +0.7
2,056,976 + Psest_1943 0.88 -3.6
2,056,976 + Psest_1943 0.88 -2.4
2,056,976 + Psest_1943 0.88 -2.9

Or see this region's nucleotide sequence