Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1939 and Psest_1940 overlap by 4 nucleotides Psest_1940 and Psest_1941 overlap by 8 nucleotides Psest_1941 and Psest_1942 overlap by 4 nucleotides
Psest_1939: Psest_1939 - Tetratricopeptide repeat., at 2,051,945 to 2,053,666
_1939
Psest_1940: Psest_1940 - Uncharacterized protein containing a von Willebrand factor type A (vWA) domain, at 2,053,663 to 2,054,682
_1940
Psest_1941: Psest_1941 - hypothetical protein, at 2,054,675 to 2,055,169
_1941
Psest_1942: Psest_1942 - Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain), at 2,055,166 to 2,056,128
_1942
Position (kb)
2053
2054
2055 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2053.251 kb on + strand, within Psest_1939 at 2053.252 kb on - strand, within Psest_1939 at 2053.252 kb on - strand, within Psest_1939 at 2053.253 kb on + strand, within Psest_1939 at 2053.253 kb on + strand, within Psest_1939 at 2053.253 kb on + strand, within Psest_1939 at 2053.253 kb on + strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.254 kb on - strand, within Psest_1939 at 2053.380 kb on - strand, within Psest_1939 at 2053.773 kb on - strand, within Psest_1940 at 2053.881 kb on - strand, within Psest_1940 at 2054.246 kb on + strand, within Psest_1940 at 2054.247 kb on - strand, within Psest_1940 at 2054.247 kb on - strand, within Psest_1940 at 2054.389 kb on + strand, within Psest_1940 at 2054.389 kb on + strand, within Psest_1940 at 2054.390 kb on - strand, within Psest_1940 at 2054.390 kb on - strand, within Psest_1940 at 2054.435 kb on - strand, within Psest_1940 at 2054.757 kb on + strand, within Psest_1941
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,053,251 + Psest_1939 0.76 -1.2 2,053,252 - Psest_1939 0.76 -3.7 2,053,252 - Psest_1939 0.76 -2.1 2,053,253 + Psest_1939 0.76 -0.4 2,053,253 + Psest_1939 0.76 -3.0 2,053,253 + Psest_1939 0.76 -1.5 2,053,253 + Psest_1939 0.76 -2.4 2,053,254 - Psest_1939 0.76 -3.1 2,053,254 - Psest_1939 0.76 -1.8 2,053,254 - Psest_1939 0.76 +0.0 2,053,254 - Psest_1939 0.76 -1.1 2,053,254 - Psest_1939 0.76 -1.3 2,053,254 - Psest_1939 0.76 -0.5 2,053,254 - Psest_1939 0.76 -2.4 2,053,254 - Psest_1939 0.76 -2.1 2,053,254 - Psest_1939 0.76 -2.4 2,053,254 - Psest_1939 0.76 -3.2 2,053,380 - Psest_1939 0.83 -1.6 2,053,773 - Psest_1940 0.11 -1.8 2,053,881 - Psest_1940 0.21 -2.7 2,054,246 + Psest_1940 0.57 -2.2 2,054,247 - Psest_1940 0.57 -1.0 2,054,247 - Psest_1940 0.57 -0.1 2,054,389 + Psest_1940 0.71 -0.5 2,054,389 + Psest_1940 0.71 -3.7 2,054,390 - Psest_1940 0.71 -1.0 2,054,390 - Psest_1940 0.71 -1.5 2,054,435 - Psest_1940 0.76 -1.8 2,054,757 + Psest_1941 0.17 -0.1
Or see this region's nucleotide sequence