Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1934

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1933 and Psest_1934 overlap by 4 nucleotidesPsest_1934 and Psest_1935 are separated by 163 nucleotides Psest_1933: Psest_1933 - hexose kinase, 1-phosphofructokinase family, at 2,045,769 to 2,046,707 _1933 Psest_1934: Psest_1934 - Predicted thioesterase, at 2,046,704 to 2,047,147 _1934 Psest_1935: Psest_1935 - hypothetical protein, at 2,047,311 to 2,048,030 _1935 Position (kb) 2046 2047 2048Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2045.738 kb on - strandat 2045.763 kb on + strandat 2045.764 kb on - strandat 2046.168 kb on + strand, within Psest_1933at 2046.168 kb on + strand, within Psest_1933at 2046.168 kb on + strand, within Psest_1933at 2046.169 kb on - strand, within Psest_1933at 2046.169 kb on - strand, within Psest_1933at 2046.226 kb on + strand, within Psest_1933at 2046.227 kb on - strand, within Psest_1933at 2046.315 kb on + strand, within Psest_1933at 2046.465 kb on + strand, within Psest_1933at 2046.465 kb on + strand, within Psest_1933at 2046.465 kb on + strand, within Psest_1933at 2046.466 kb on - strand, within Psest_1933at 2046.466 kb on - strand, within Psest_1933at 2046.466 kb on - strand, within Psest_1933at 2046.466 kb on - strand, within Psest_1933at 2046.466 kb on - strand, within Psest_1933at 2046.466 kb on - strand, within Psest_1933at 2046.466 kb on - strand, within Psest_1933at 2046.472 kb on - strand, within Psest_1933at 2046.652 kb on + strandat 2046.652 kb on + strandat 2046.652 kb on + strandat 2046.705 kb on + strandat 2046.706 kb on - strandat 2046.778 kb on - strand, within Psest_1934at 2046.784 kb on - strand, within Psest_1934at 2046.784 kb on - strand, within Psest_1934at 2046.864 kb on + strand, within Psest_1934at 2046.865 kb on - strand, within Psest_1934at 2046.929 kb on - strand, within Psest_1934at 2046.929 kb on - strand, within Psest_1934at 2046.929 kb on - strand, within Psest_1934at 2046.930 kb on + strand, within Psest_1934at 2046.930 kb on + strand, within Psest_1934at 2046.930 kb on + strand, within Psest_1934at 2046.930 kb on + strand, within Psest_1934at 2046.930 kb on + strand, within Psest_1934at 2046.930 kb on + strand, within Psest_1934at 2046.931 kb on - strand, within Psest_1934at 2046.931 kb on - strand, within Psest_1934at 2046.931 kb on - strand, within Psest_1934at 2046.931 kb on - strand, within Psest_1934at 2047.001 kb on + strand, within Psest_1934at 2047.001 kb on + strand, within Psest_1934at 2047.001 kb on + strand, within Psest_1934at 2047.001 kb on + strand, within Psest_1934at 2047.002 kb on - strand, within Psest_1934at 2047.002 kb on - strand, within Psest_1934at 2047.030 kb on + strand, within Psest_1934at 2047.030 kb on + strand, within Psest_1934at 2047.182 kb on + strandat 2047.183 kb on - strandat 2047.183 kb on - strandat 2047.588 kb on - strand, within Psest_1935at 2047.679 kb on + strand, within Psest_1935at 2047.679 kb on + strand, within Psest_1935at 2047.680 kb on - strand, within Psest_1935at 2047.680 kb on - strand, within Psest_1935at 2047.680 kb on - strand, within Psest_1935at 2047.680 kb on - strand, within Psest_1935at 2047.683 kb on + strand, within Psest_1935at 2047.683 kb on + strand, within Psest_1935at 2047.683 kb on + strand, within Psest_1935at 2047.683 kb on + strand, within Psest_1935at 2047.683 kb on + strand, within Psest_1935at 2047.683 kb on + strand, within Psest_1935at 2047.683 kb on + strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.684 kb on - strand, within Psest_1935at 2047.766 kb on - strand, within Psest_1935

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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2,045,738 - +1.6
2,045,763 + -1.7
2,045,764 - +1.1
2,046,168 + Psest_1933 0.42 -0.9
2,046,168 + Psest_1933 0.42 -0.3
2,046,168 + Psest_1933 0.42 +0.1
2,046,169 - Psest_1933 0.43 +0.5
2,046,169 - Psest_1933 0.43 -0.2
2,046,226 + Psest_1933 0.49 -0.5
2,046,227 - Psest_1933 0.49 -0.7
2,046,315 + Psest_1933 0.58 -0.5
2,046,465 + Psest_1933 0.74 -1.3
2,046,465 + Psest_1933 0.74 -0.7
2,046,465 + Psest_1933 0.74 -0.8
2,046,466 - Psest_1933 0.74 -0.5
2,046,466 - Psest_1933 0.74 -0.7
2,046,466 - Psest_1933 0.74 -0.3
2,046,466 - Psest_1933 0.74 +0.3
2,046,466 - Psest_1933 0.74 -0.0
2,046,466 - Psest_1933 0.74 -1.3
2,046,466 - Psest_1933 0.74 -0.6
2,046,472 - Psest_1933 0.75 -1.4
2,046,652 + -2.0
2,046,652 + +0.6
2,046,652 + -2.5
2,046,705 + -0.1
2,046,706 - -0.6
2,046,778 - Psest_1934 0.17 -1.5
2,046,784 - Psest_1934 0.18 -2.7
2,046,784 - Psest_1934 0.18 -0.9
2,046,864 + Psest_1934 0.36 +1.4
2,046,865 - Psest_1934 0.36 -1.6
2,046,929 - Psest_1934 0.51 -4.0
2,046,929 - Psest_1934 0.51 -1.0
2,046,929 - Psest_1934 0.51 -0.3
2,046,930 + Psest_1934 0.51 +0.6
2,046,930 + Psest_1934 0.51 -2.6
2,046,930 + Psest_1934 0.51 -0.5
2,046,930 + Psest_1934 0.51 -1.7
2,046,930 + Psest_1934 0.51 +0.1
2,046,930 + Psest_1934 0.51 +0.1
2,046,931 - Psest_1934 0.51 +0.3
2,046,931 - Psest_1934 0.51 -0.7
2,046,931 - Psest_1934 0.51 +0.1
2,046,931 - Psest_1934 0.51 -2.3
2,047,001 + Psest_1934 0.67 -2.2
2,047,001 + Psest_1934 0.67 -0.9
2,047,001 + Psest_1934 0.67 -0.9
2,047,001 + Psest_1934 0.67 -1.5
2,047,002 - Psest_1934 0.67 -0.1
2,047,002 - Psest_1934 0.67 +0.3
2,047,030 + Psest_1934 0.73 -3.3
2,047,030 + Psest_1934 0.73 -0.4
2,047,182 + +0.1
2,047,183 - -1.4
2,047,183 - -2.3
2,047,588 - Psest_1935 0.38 -0.1
2,047,679 + Psest_1935 0.51 +1.0
2,047,679 + Psest_1935 0.51 +0.5
2,047,680 - Psest_1935 0.51 -1.5
2,047,680 - Psest_1935 0.51 +0.1
2,047,680 - Psest_1935 0.51 +0.0
2,047,680 - Psest_1935 0.51 +0.7
2,047,683 + Psest_1935 0.52 -0.5
2,047,683 + Psest_1935 0.52 +0.2
2,047,683 + Psest_1935 0.52 +0.6
2,047,683 + Psest_1935 0.52 +0.0
2,047,683 + Psest_1935 0.52 +2.0
2,047,683 + Psest_1935 0.52 -0.7
2,047,683 + Psest_1935 0.52 +0.5
2,047,684 - Psest_1935 0.52 -0.4
2,047,684 - Psest_1935 0.52 -1.0
2,047,684 - Psest_1935 0.52 +0.8
2,047,684 - Psest_1935 0.52 -0.5
2,047,684 - Psest_1935 0.52 -3.0
2,047,684 - Psest_1935 0.52 +0.5
2,047,684 - Psest_1935 0.52 -0.5
2,047,684 - Psest_1935 0.52 -1.2
2,047,684 - Psest_1935 0.52 -0.6
2,047,684 - Psest_1935 0.52 +0.2
2,047,684 - Psest_1935 0.52 +0.5
2,047,684 - Psest_1935 0.52 -0.7
2,047,684 - Psest_1935 0.52 -0.4
2,047,684 - Psest_1935 0.52 -1.9
2,047,766 - Psest_1935 0.63 -0.0

Or see this region's nucleotide sequence