Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1926 and Psest_1927 are separated by 42 nucleotides Psest_1927 and Psest_1928 are separated by 24 nucleotides Psest_1928 and Psest_1930 are separated by 492 nucleotides Psest_1930 and Psest_1931 are separated by 3 nucleotides
Psest_1926: Psest_1926 - Uncharacterized anaerobic dehydrogenase, at 2,036,096 to 2,038,801
_1926
Psest_1927: Psest_1927 - nitrite reductase [NAD(P)H], small subunit, at 2,038,844 to 2,039,173
_1927
Psest_1928: Psest_1928 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) , at 2,039,198 to 2,041,648
_1928
Psest_1930: Psest_1930 - hypothetical protein, at 2,042,141 to 2,042,449
_1930
Psest_1931: Psest_1931 - Serine/threonine protein phosphatase, at 2,042,453 to 2,044,126
_1931
Position (kb)
2039
2040
2041
2042 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2038.275 kb on + strand, within Psest_1926 at 2038.330 kb on - strand, within Psest_1926 at 2038.369 kb on - strand, within Psest_1926 at 2038.458 kb on + strand, within Psest_1926 at 2038.458 kb on + strand, within Psest_1926 at 2038.458 kb on + strand, within Psest_1926 at 2038.461 kb on + strand, within Psest_1926 at 2038.461 kb on + strand, within Psest_1926 at 2038.491 kb on + strand, within Psest_1926 at 2038.491 kb on + strand, within Psest_1926 at 2038.491 kb on + strand, within Psest_1926 at 2038.491 kb on + strand, within Psest_1926 at 2038.492 kb on - strand, within Psest_1926 at 2038.538 kb on + strand at 2038.617 kb on + strand at 2038.795 kb on + strand at 2038.795 kb on + strand at 2038.796 kb on - strand at 2038.796 kb on - strand at 2038.871 kb on - strand at 2039.388 kb on + strand at 2039.388 kb on + strand at 2039.388 kb on + strand at 2039.388 kb on + strand at 2039.388 kb on + strand at 2039.388 kb on + strand at 2039.389 kb on - strand at 2039.389 kb on - strand at 2039.389 kb on - strand at 2039.389 kb on - strand at 2039.389 kb on - strand at 2039.389 kb on - strand at 2039.389 kb on - strand at 2039.389 kb on - strand at 2039.389 kb on - strand at 2039.409 kb on + strand at 2039.409 kb on + strand at 2039.409 kb on + strand at 2039.451 kb on + strand, within Psest_1928 at 2039.532 kb on + strand, within Psest_1928 at 2039.532 kb on + strand, within Psest_1928 at 2039.532 kb on + strand, within Psest_1928 at 2039.532 kb on + strand, within Psest_1928 at 2039.532 kb on + strand, within Psest_1928 at 2039.532 kb on + strand, within Psest_1928 at 2039.532 kb on + strand, within Psest_1928 at 2039.533 kb on - strand, within Psest_1928 at 2039.533 kb on - strand, within Psest_1928 at 2039.533 kb on - strand, within Psest_1928 at 2039.533 kb on - strand, within Psest_1928 at 2039.533 kb on - strand, within Psest_1928 at 2039.533 kb on - strand, within Psest_1928 at 2039.774 kb on - strand, within Psest_1928 at 2039.868 kb on + strand, within Psest_1928 at 2039.869 kb on - strand, within Psest_1928 at 2039.869 kb on - strand, within Psest_1928 at 2039.946 kb on + strand, within Psest_1928 at 2040.042 kb on + strand, within Psest_1928 at 2040.043 kb on - strand, within Psest_1928 at 2040.045 kb on + strand, within Psest_1928 at 2040.045 kb on + strand, within Psest_1928 at 2040.045 kb on + strand, within Psest_1928 at 2040.046 kb on - strand, within Psest_1928 at 2040.046 kb on - strand, within Psest_1928 at 2040.513 kb on + strand, within Psest_1928 at 2040.514 kb on - strand, within Psest_1928 at 2040.514 kb on - strand, within Psest_1928 at 2040.514 kb on - strand, within Psest_1928 at 2040.589 kb on - strand, within Psest_1928 at 2040.683 kb on + strand, within Psest_1928 at 2040.683 kb on + strand, within Psest_1928 at 2040.684 kb on - strand, within Psest_1928 at 2040.711 kb on + strand, within Psest_1928 at 2040.786 kb on + strand, within Psest_1928 at 2040.825 kb on + strand, within Psest_1928 at 2040.825 kb on + strand, within Psest_1928 at 2040.825 kb on + strand, within Psest_1928 at 2040.825 kb on + strand, within Psest_1928 at 2040.825 kb on + strand, within Psest_1928 at 2040.826 kb on - strand, within Psest_1928 at 2040.840 kb on + strand, within Psest_1928 at 2040.840 kb on + strand, within Psest_1928 at 2040.840 kb on + strand, within Psest_1928 at 2040.841 kb on - strand, within Psest_1928 at 2040.841 kb on - strand, within Psest_1928 at 2041.521 kb on + strand at 2041.521 kb on + strand at 2041.560 kb on + strand at 2041.804 kb on - strand at 2041.852 kb on + strand at 2041.853 kb on - strand at 2041.967 kb on + strand at 2041.968 kb on - strand at 2041.968 kb on - strand at 2042.033 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 2,038,275 + Psest_1926 0.81 -0.6 2,038,330 - Psest_1926 0.83 -0.7 2,038,369 - Psest_1926 0.84 -0.9 2,038,458 + Psest_1926 0.87 +2.1 2,038,458 + Psest_1926 0.87 -0.6 2,038,458 + Psest_1926 0.87 -0.4 2,038,461 + Psest_1926 0.87 -0.2 2,038,461 + Psest_1926 0.87 -1.2 2,038,491 + Psest_1926 0.89 -2.4 2,038,491 + Psest_1926 0.89 -0.9 2,038,491 + Psest_1926 0.89 -1.5 2,038,491 + Psest_1926 0.89 -1.5 2,038,492 - Psest_1926 0.89 -1.3 2,038,538 + -0.6 2,038,617 + -0.2 2,038,795 + +1.1 2,038,795 + +0.1 2,038,796 - +0.1 2,038,796 - -0.7 2,038,871 - -0.2 2,039,388 + -0.9 2,039,388 + -1.3 2,039,388 + -1.7 2,039,388 + +2.6 2,039,388 + +0.6 2,039,388 + -0.7 2,039,389 - -0.0 2,039,389 - -1.3 2,039,389 - -0.5 2,039,389 - -0.7 2,039,389 - -0.1 2,039,389 - -1.4 2,039,389 - -0.9 2,039,389 - +1.3 2,039,389 - -1.8 2,039,409 + -1.5 2,039,409 + -1.7 2,039,409 + -1.5 2,039,451 + Psest_1928 0.10 -2.3 2,039,532 + Psest_1928 0.14 -0.8 2,039,532 + Psest_1928 0.14 -3.6 2,039,532 + Psest_1928 0.14 -1.7 2,039,532 + Psest_1928 0.14 -1.7 2,039,532 + Psest_1928 0.14 +0.4 2,039,532 + Psest_1928 0.14 +0.7 2,039,532 + Psest_1928 0.14 +0.8 2,039,533 - Psest_1928 0.14 -0.5 2,039,533 - Psest_1928 0.14 +0.3 2,039,533 - Psest_1928 0.14 -1.3 2,039,533 - Psest_1928 0.14 +0.9 2,039,533 - Psest_1928 0.14 -0.9 2,039,533 - Psest_1928 0.14 -1.9 2,039,774 - Psest_1928 0.24 -0.7 2,039,868 + Psest_1928 0.27 -1.5 2,039,869 - Psest_1928 0.27 -1.7 2,039,869 - Psest_1928 0.27 +0.1 2,039,946 + Psest_1928 0.31 -0.4 2,040,042 + Psest_1928 0.34 -1.7 2,040,043 - Psest_1928 0.34 +1.1 2,040,045 + Psest_1928 0.35 +1.1 2,040,045 + Psest_1928 0.35 -1.3 2,040,045 + Psest_1928 0.35 -0.5 2,040,046 - Psest_1928 0.35 -0.2 2,040,046 - Psest_1928 0.35 +0.1 2,040,513 + Psest_1928 0.54 -1.2 2,040,514 - Psest_1928 0.54 -1.5 2,040,514 - Psest_1928 0.54 -1.1 2,040,514 - Psest_1928 0.54 +0.1 2,040,589 - Psest_1928 0.57 +0.1 2,040,683 + Psest_1928 0.61 -0.7 2,040,683 + Psest_1928 0.61 +0.6 2,040,684 - Psest_1928 0.61 -0.0 2,040,711 + Psest_1928 0.62 +1.1 2,040,786 + Psest_1928 0.65 -0.5 2,040,825 + Psest_1928 0.66 -1.1 2,040,825 + Psest_1928 0.66 -0.9 2,040,825 + Psest_1928 0.66 -0.5 2,040,825 + Psest_1928 0.66 -1.1 2,040,825 + Psest_1928 0.66 +0.5 2,040,826 - Psest_1928 0.66 +1.1 2,040,840 + Psest_1928 0.67 -1.7 2,040,840 + Psest_1928 0.67 +0.2 2,040,840 + Psest_1928 0.67 +0.2 2,040,841 - Psest_1928 0.67 -2.2 2,040,841 - Psest_1928 0.67 -1.3 2,041,521 + -0.6 2,041,521 + +0.1 2,041,560 + -0.4 2,041,804 - +0.6 2,041,852 + -0.3 2,041,853 - -2.7 2,041,967 + -0.4 2,041,968 - -0.4 2,041,968 - -0.5 2,042,033 - -2.2
Or see this region's nucleotide sequence