Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1928

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1926 and Psest_1927 are separated by 42 nucleotidesPsest_1927 and Psest_1928 are separated by 24 nucleotidesPsest_1928 and Psest_1930 are separated by 492 nucleotidesPsest_1930 and Psest_1931 are separated by 3 nucleotides Psest_1926: Psest_1926 - Uncharacterized anaerobic dehydrogenase, at 2,036,096 to 2,038,801 _1926 Psest_1927: Psest_1927 - nitrite reductase [NAD(P)H], small subunit, at 2,038,844 to 2,039,173 _1927 Psest_1928: Psest_1928 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data), at 2,039,198 to 2,041,648 _1928 Psest_1930: Psest_1930 - hypothetical protein, at 2,042,141 to 2,042,449 _1930 Psest_1931: Psest_1931 - Serine/threonine protein phosphatase, at 2,042,453 to 2,044,126 _1931 Position (kb) 2039 2040 2041 2042Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2038.275 kb on + strand, within Psest_1926at 2038.330 kb on - strand, within Psest_1926at 2038.369 kb on - strand, within Psest_1926at 2038.458 kb on + strand, within Psest_1926at 2038.458 kb on + strand, within Psest_1926at 2038.458 kb on + strand, within Psest_1926at 2038.461 kb on + strand, within Psest_1926at 2038.461 kb on + strand, within Psest_1926at 2038.491 kb on + strand, within Psest_1926at 2038.491 kb on + strand, within Psest_1926at 2038.491 kb on + strand, within Psest_1926at 2038.491 kb on + strand, within Psest_1926at 2038.492 kb on - strand, within Psest_1926at 2038.538 kb on + strandat 2038.617 kb on + strandat 2038.795 kb on + strandat 2038.795 kb on + strandat 2038.796 kb on - strandat 2038.796 kb on - strandat 2038.871 kb on - strandat 2039.388 kb on + strandat 2039.388 kb on + strandat 2039.388 kb on + strandat 2039.388 kb on + strandat 2039.388 kb on + strandat 2039.388 kb on + strandat 2039.389 kb on - strandat 2039.389 kb on - strandat 2039.389 kb on - strandat 2039.389 kb on - strandat 2039.389 kb on - strandat 2039.389 kb on - strandat 2039.389 kb on - strandat 2039.389 kb on - strandat 2039.389 kb on - strandat 2039.409 kb on + strandat 2039.409 kb on + strandat 2039.409 kb on + strandat 2039.451 kb on + strand, within Psest_1928at 2039.532 kb on + strand, within Psest_1928at 2039.532 kb on + strand, within Psest_1928at 2039.532 kb on + strand, within Psest_1928at 2039.532 kb on + strand, within Psest_1928at 2039.532 kb on + strand, within Psest_1928at 2039.532 kb on + strand, within Psest_1928at 2039.532 kb on + strand, within Psest_1928at 2039.533 kb on - strand, within Psest_1928at 2039.533 kb on - strand, within Psest_1928at 2039.533 kb on - strand, within Psest_1928at 2039.533 kb on - strand, within Psest_1928at 2039.533 kb on - strand, within Psest_1928at 2039.533 kb on - strand, within Psest_1928at 2039.774 kb on - strand, within Psest_1928at 2039.868 kb on + strand, within Psest_1928at 2039.869 kb on - strand, within Psest_1928at 2039.869 kb on - strand, within Psest_1928at 2039.946 kb on + strand, within Psest_1928at 2040.042 kb on + strand, within Psest_1928at 2040.043 kb on - strand, within Psest_1928at 2040.045 kb on + strand, within Psest_1928at 2040.045 kb on + strand, within Psest_1928at 2040.045 kb on + strand, within Psest_1928at 2040.046 kb on - strand, within Psest_1928at 2040.046 kb on - strand, within Psest_1928at 2040.513 kb on + strand, within Psest_1928at 2040.514 kb on - strand, within Psest_1928at 2040.514 kb on - strand, within Psest_1928at 2040.514 kb on - strand, within Psest_1928at 2040.589 kb on - strand, within Psest_1928at 2040.683 kb on + strand, within Psest_1928at 2040.683 kb on + strand, within Psest_1928at 2040.684 kb on - strand, within Psest_1928at 2040.711 kb on + strand, within Psest_1928at 2040.786 kb on + strand, within Psest_1928at 2040.825 kb on + strand, within Psest_1928at 2040.825 kb on + strand, within Psest_1928at 2040.825 kb on + strand, within Psest_1928at 2040.825 kb on + strand, within Psest_1928at 2040.825 kb on + strand, within Psest_1928at 2040.826 kb on - strand, within Psest_1928at 2040.840 kb on + strand, within Psest_1928at 2040.840 kb on + strand, within Psest_1928at 2040.840 kb on + strand, within Psest_1928at 2040.841 kb on - strand, within Psest_1928at 2040.841 kb on - strand, within Psest_1928at 2041.521 kb on + strandat 2041.521 kb on + strandat 2041.560 kb on + strandat 2041.804 kb on - strandat 2041.852 kb on + strandat 2041.853 kb on - strandat 2041.967 kb on + strandat 2041.968 kb on - strandat 2041.968 kb on - strandat 2042.033 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
remove
2,038,275 + Psest_1926 0.81 -0.6
2,038,330 - Psest_1926 0.83 -0.7
2,038,369 - Psest_1926 0.84 -0.9
2,038,458 + Psest_1926 0.87 +2.1
2,038,458 + Psest_1926 0.87 -0.6
2,038,458 + Psest_1926 0.87 -0.4
2,038,461 + Psest_1926 0.87 -0.2
2,038,461 + Psest_1926 0.87 -1.2
2,038,491 + Psest_1926 0.89 -2.4
2,038,491 + Psest_1926 0.89 -0.9
2,038,491 + Psest_1926 0.89 -1.5
2,038,491 + Psest_1926 0.89 -1.5
2,038,492 - Psest_1926 0.89 -1.3
2,038,538 + -0.6
2,038,617 + -0.2
2,038,795 + +1.1
2,038,795 + +0.1
2,038,796 - +0.1
2,038,796 - -0.7
2,038,871 - -0.2
2,039,388 + -0.9
2,039,388 + -1.3
2,039,388 + -1.7
2,039,388 + +2.6
2,039,388 + +0.6
2,039,388 + -0.7
2,039,389 - -0.0
2,039,389 - -1.3
2,039,389 - -0.5
2,039,389 - -0.7
2,039,389 - -0.1
2,039,389 - -1.4
2,039,389 - -0.9
2,039,389 - +1.3
2,039,389 - -1.8
2,039,409 + -1.5
2,039,409 + -1.7
2,039,409 + -1.5
2,039,451 + Psest_1928 0.10 -2.3
2,039,532 + Psest_1928 0.14 -0.8
2,039,532 + Psest_1928 0.14 -3.6
2,039,532 + Psest_1928 0.14 -1.7
2,039,532 + Psest_1928 0.14 -1.7
2,039,532 + Psest_1928 0.14 +0.4
2,039,532 + Psest_1928 0.14 +0.7
2,039,532 + Psest_1928 0.14 +0.8
2,039,533 - Psest_1928 0.14 -0.5
2,039,533 - Psest_1928 0.14 +0.3
2,039,533 - Psest_1928 0.14 -1.3
2,039,533 - Psest_1928 0.14 +0.9
2,039,533 - Psest_1928 0.14 -0.9
2,039,533 - Psest_1928 0.14 -1.9
2,039,774 - Psest_1928 0.24 -0.7
2,039,868 + Psest_1928 0.27 -1.5
2,039,869 - Psest_1928 0.27 -1.7
2,039,869 - Psest_1928 0.27 +0.1
2,039,946 + Psest_1928 0.31 -0.4
2,040,042 + Psest_1928 0.34 -1.7
2,040,043 - Psest_1928 0.34 +1.1
2,040,045 + Psest_1928 0.35 +1.1
2,040,045 + Psest_1928 0.35 -1.3
2,040,045 + Psest_1928 0.35 -0.5
2,040,046 - Psest_1928 0.35 -0.2
2,040,046 - Psest_1928 0.35 +0.1
2,040,513 + Psest_1928 0.54 -1.2
2,040,514 - Psest_1928 0.54 -1.5
2,040,514 - Psest_1928 0.54 -1.1
2,040,514 - Psest_1928 0.54 +0.1
2,040,589 - Psest_1928 0.57 +0.1
2,040,683 + Psest_1928 0.61 -0.7
2,040,683 + Psest_1928 0.61 +0.6
2,040,684 - Psest_1928 0.61 -0.0
2,040,711 + Psest_1928 0.62 +1.1
2,040,786 + Psest_1928 0.65 -0.5
2,040,825 + Psest_1928 0.66 -1.1
2,040,825 + Psest_1928 0.66 -0.9
2,040,825 + Psest_1928 0.66 -0.5
2,040,825 + Psest_1928 0.66 -1.1
2,040,825 + Psest_1928 0.66 +0.5
2,040,826 - Psest_1928 0.66 +1.1
2,040,840 + Psest_1928 0.67 -1.7
2,040,840 + Psest_1928 0.67 +0.2
2,040,840 + Psest_1928 0.67 +0.2
2,040,841 - Psest_1928 0.67 -2.2
2,040,841 - Psest_1928 0.67 -1.3
2,041,521 + -0.6
2,041,521 + +0.1
2,041,560 + -0.4
2,041,804 - +0.6
2,041,852 + -0.3
2,041,853 - -2.7
2,041,967 + -0.4
2,041,968 - -0.4
2,041,968 - -0.5
2,042,033 - -2.2

Or see this region's nucleotide sequence