Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1915

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1913 and Psest_1914 are separated by 108 nucleotidesPsest_1914 and Psest_1915 are separated by 4 nucleotidesPsest_1915 and Psest_1916 are separated by 39 nucleotides Psest_1913: Psest_1913 - Transcriptional regulator, at 2,020,371 to 2,021,327 _1913 Psest_1914: Psest_1914 - Predicted permeases, at 2,021,436 to 2,022,188 _1914 Psest_1915: Psest_1915 - chromate transporter, chromate ion transporter (CHR) family, at 2,022,193 to 2,023,413 _1915 Psest_1916: Psest_1916 - Uncharacterized protein conserved in bacteria, at 2,023,453 to 2,024,433 _1916 Position (kb) 2022 2023 2024Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2021.210 kb on + strand, within Psest_1913at 2021.280 kb on + strandat 2021.280 kb on + strandat 2021.280 kb on + strandat 2021.402 kb on - strandat 2021.402 kb on - strandat 2021.407 kb on - strandat 2021.480 kb on - strandat 2021.480 kb on - strandat 2021.636 kb on + strand, within Psest_1914at 2021.778 kb on + strand, within Psest_1914at 2021.778 kb on + strand, within Psest_1914at 2021.778 kb on + strand, within Psest_1914at 2021.778 kb on + strand, within Psest_1914at 2021.778 kb on + strand, within Psest_1914at 2021.778 kb on + strand, within Psest_1914at 2021.778 kb on + strand, within Psest_1914at 2021.779 kb on - strand, within Psest_1914at 2021.779 kb on - strand, within Psest_1914at 2021.779 kb on - strand, within Psest_1914at 2021.936 kb on - strand, within Psest_1914at 2021.936 kb on - strand, within Psest_1914at 2021.994 kb on - strand, within Psest_1914at 2022.015 kb on + strand, within Psest_1914at 2022.015 kb on + strand, within Psest_1914at 2022.016 kb on - strand, within Psest_1914at 2022.016 kb on - strand, within Psest_1914at 2022.016 kb on - strand, within Psest_1914at 2022.016 kb on - strand, within Psest_1914at 2022.016 kb on - strand, within Psest_1914at 2022.266 kb on + strandat 2022.266 kb on + strandat 2022.266 kb on + strandat 2022.267 kb on - strandat 2022.267 kb on - strandat 2022.267 kb on - strandat 2022.267 kb on - strandat 2022.267 kb on - strandat 2022.267 kb on - strandat 2022.267 kb on - strandat 2022.267 kb on - strandat 2022.414 kb on + strand, within Psest_1915at 2022.415 kb on - strand, within Psest_1915at 2022.415 kb on - strand, within Psest_1915at 2022.659 kb on - strand, within Psest_1915at 2022.661 kb on + strand, within Psest_1915at 2022.661 kb on + strand, within Psest_1915at 2022.661 kb on + strand, within Psest_1915at 2022.662 kb on - strand, within Psest_1915at 2022.698 kb on + strand, within Psest_1915at 2022.817 kb on + strand, within Psest_1915at 2022.830 kb on - strand, within Psest_1915at 2022.830 kb on - strand, within Psest_1915at 2023.096 kb on + strand, within Psest_1915at 2023.096 kb on + strand, within Psest_1915at 2023.125 kb on + strand, within Psest_1915at 2024.173 kb on + strand, within Psest_1916at 2024.174 kb on - strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.183 kb on + strand, within Psest_1916at 2024.186 kb on + strand, within Psest_1916at 2024.186 kb on + strand, within Psest_1916at 2024.186 kb on + strand, within Psest_1916at 2024.187 kb on - strand, within Psest_1916at 2024.187 kb on - strand, within Psest_1916at 2024.356 kb on + strandat 2024.357 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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2,021,210 + Psest_1913 0.88 -1.5
2,021,280 + +0.3
2,021,280 + -1.4
2,021,280 + +0.7
2,021,402 - +0.2
2,021,402 - +0.5
2,021,407 - -0.7
2,021,480 - -1.2
2,021,480 - +0.2
2,021,636 + Psest_1914 0.27 -2.7
2,021,778 + Psest_1914 0.45 +0.1
2,021,778 + Psest_1914 0.45 -0.2
2,021,778 + Psest_1914 0.45 +0.0
2,021,778 + Psest_1914 0.45 -1.2
2,021,778 + Psest_1914 0.45 +0.3
2,021,778 + Psest_1914 0.45 +0.9
2,021,778 + Psest_1914 0.45 +0.6
2,021,779 - Psest_1914 0.46 +0.1
2,021,779 - Psest_1914 0.46 -0.5
2,021,779 - Psest_1914 0.46 -2.6
2,021,936 - Psest_1914 0.66 +0.7
2,021,936 - Psest_1914 0.66 -0.3
2,021,994 - Psest_1914 0.74 -1.8
2,022,015 + Psest_1914 0.77 +0.1
2,022,015 + Psest_1914 0.77 -0.6
2,022,016 - Psest_1914 0.77 -0.9
2,022,016 - Psest_1914 0.77 -0.2
2,022,016 - Psest_1914 0.77 -0.6
2,022,016 - Psest_1914 0.77 -0.3
2,022,016 - Psest_1914 0.77 -1.2
2,022,266 + -0.5
2,022,266 + -1.7
2,022,266 + +2.1
2,022,267 - +0.5
2,022,267 - +1.1
2,022,267 - -0.0
2,022,267 - -0.4
2,022,267 - -0.4
2,022,267 - -0.2
2,022,267 - +0.1
2,022,267 - -1.0
2,022,414 + Psest_1915 0.18 -1.5
2,022,415 - Psest_1915 0.18 +1.5
2,022,415 - Psest_1915 0.18 +2.1
2,022,659 - Psest_1915 0.38 -0.8
2,022,661 + Psest_1915 0.38 -2.6
2,022,661 + Psest_1915 0.38 -2.1
2,022,661 + Psest_1915 0.38 -1.8
2,022,662 - Psest_1915 0.38 +0.2
2,022,698 + Psest_1915 0.41 -1.3
2,022,817 + Psest_1915 0.51 +3.4
2,022,830 - Psest_1915 0.52 -1.1
2,022,830 - Psest_1915 0.52 -0.2
2,023,096 + Psest_1915 0.74 -1.7
2,023,096 + Psest_1915 0.74 +0.4
2,023,125 + Psest_1915 0.76 -1.8
2,024,173 + Psest_1916 0.73 +0.2
2,024,174 - Psest_1916 0.73 +0.4
2,024,183 + Psest_1916 0.74 -0.4
2,024,183 + Psest_1916 0.74 -0.6
2,024,183 + Psest_1916 0.74 -0.2
2,024,183 + Psest_1916 0.74 +0.4
2,024,183 + Psest_1916 0.74 -1.1
2,024,183 + Psest_1916 0.74 -0.5
2,024,186 + Psest_1916 0.75 +0.0
2,024,186 + Psest_1916 0.75 -0.6
2,024,186 + Psest_1916 0.75 -1.1
2,024,187 - Psest_1916 0.75 -2.0
2,024,187 - Psest_1916 0.75 -0.7
2,024,356 + +0.6
2,024,357 - +0.1

Or see this region's nucleotide sequence