Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1778 and Psest_1779 are separated by 17 nucleotides Psest_1779 and Psest_1780 are separated by 27 nucleotides Psest_1780 and Psest_1781 are separated by 2 nucleotides Psest_1781 and Psest_1782 are separated by 182 nucleotides Psest_1782 and Psest_1783 overlap by 4 nucleotides Psest_1783 and Psest_1784 are separated by 2 nucleotides Psest_1784 and Psest_1785 are separated by 13 nucleotides
Psest_1778: Psest_1778 - tRNA_Glu_TTC, at 1,877,996 to 1,878,071
_1778
Psest_1779: Psest_1779 - tRNA_Gly_GCC, at 1,878,089 to 1,878,164
_1779
Psest_1780: Psest_1780 - hypothetical protein, at 1,878,192 to 1,878,371
_1780
Psest_1781: Psest_1781 - Uncharacterized protein conserved in bacteria, at 1,878,374 to 1,878,664
_1781
Psest_1782: Psest_1782 - Predicted transcriptional regulators, at 1,878,847 to 1,879,164
_1782
Psest_1783: Psest_1783 - Predicted transporter component, at 1,879,161 to 1,879,595
_1783
Psest_1784: Psest_1784 - Predicted transporter component, at 1,879,598 to 1,880,017
_1784
Psest_1785: Psest_1785 - Protein of unknown function (DUF2892)., at 1,880,031 to 1,880,228
_1785
Position (kb)
1878
1879
1880 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1877.890 kb on + strand at 1877.890 kb on + strand at 1877.891 kb on - strand at 1877.918 kb on + strand at 1877.918 kb on + strand at 1877.918 kb on + strand at 1877.918 kb on + strand at 1878.081 kb on + strand at 1878.081 kb on + strand at 1878.183 kb on + strand at 1878.381 kb on + strand at 1878.382 kb on - strand at 1878.382 kb on - strand at 1878.676 kb on + strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.677 kb on - strand at 1878.729 kb on - strand at 1879.084 kb on + strand, within Psest_1782 at 1879.084 kb on + strand, within Psest_1782 at 1879.132 kb on + strand, within Psest_1782 at 1879.132 kb on + strand, within Psest_1782 at 1879.133 kb on - strand at 1879.213 kb on + strand, within Psest_1783 at 1879.489 kb on + strand, within Psest_1783 at 1879.489 kb on + strand, within Psest_1783 at 1879.489 kb on + strand, within Psest_1783 at 1879.489 kb on + strand, within Psest_1783 at 1879.490 kb on - strand, within Psest_1783 at 1880.065 kb on + strand, within Psest_1785 at 1880.065 kb on + strand, within Psest_1785 at 1880.065 kb on + strand, within Psest_1785 at 1880.065 kb on + strand, within Psest_1785 at 1880.065 kb on + strand, within Psest_1785 at 1880.065 kb on + strand, within Psest_1785 at 1880.065 kb on + strand, within Psest_1785 at 1880.066 kb on - strand, within Psest_1785 at 1880.066 kb on - strand, within Psest_1785 at 1880.066 kb on - strand, within Psest_1785 at 1880.066 kb on - strand, within Psest_1785 at 1880.066 kb on - strand, within Psest_1785 at 1880.066 kb on - strand, within Psest_1785 at 1880.066 kb on - strand, within Psest_1785 at 1880.069 kb on + strand, within Psest_1785 at 1880.069 kb on + strand, within Psest_1785 at 1880.070 kb on - strand, within Psest_1785
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 1,877,890 + +0.8 1,877,890 + +0.9 1,877,891 - -1.5 1,877,918 + -0.1 1,877,918 + +2.3 1,877,918 + +1.0 1,877,918 + +1.5 1,878,081 + -0.3 1,878,081 + +2.4 1,878,183 + +2.7 1,878,381 + -0.1 1,878,382 - -0.0 1,878,382 - +0.8 1,878,676 + +1.1 1,878,677 - -1.4 1,878,677 - -2.4 1,878,677 - -0.8 1,878,677 - +1.0 1,878,677 - +0.6 1,878,677 - +0.1 1,878,729 - -0.4 1,879,084 + Psest_1782 0.75 -0.2 1,879,084 + Psest_1782 0.75 +1.9 1,879,132 + Psest_1782 0.90 +1.6 1,879,132 + Psest_1782 0.90 +2.2 1,879,133 - -1.0 1,879,213 + Psest_1783 0.12 -0.8 1,879,489 + Psest_1783 0.75 +1.0 1,879,489 + Psest_1783 0.75 +0.9 1,879,489 + Psest_1783 0.75 +1.2 1,879,489 + Psest_1783 0.75 +1.1 1,879,490 - Psest_1783 0.76 -0.2 1,880,065 + Psest_1785 0.17 +3.2 1,880,065 + Psest_1785 0.17 +1.9 1,880,065 + Psest_1785 0.17 -0.0 1,880,065 + Psest_1785 0.17 +2.0 1,880,065 + Psest_1785 0.17 +0.7 1,880,065 + Psest_1785 0.17 -0.5 1,880,065 + Psest_1785 0.17 +1.4 1,880,066 - Psest_1785 0.18 +0.3 1,880,066 - Psest_1785 0.18 +0.1 1,880,066 - Psest_1785 0.18 -0.8 1,880,066 - Psest_1785 0.18 -2.1 1,880,066 - Psest_1785 0.18 +0.1 1,880,066 - Psest_1785 0.18 -0.1 1,880,066 - Psest_1785 0.18 -1.2 1,880,069 + Psest_1785 0.19 +0.7 1,880,069 + Psest_1785 0.19 -0.0 1,880,070 - Psest_1785 0.20 +2.4
Or see this region's nucleotide sequence