Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1715

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1713 and Psest_1714 are separated by 187 nucleotidesPsest_1714 and Psest_1715 are separated by 53 nucleotidesPsest_1715 and Psest_1716 are separated by 217 nucleotides Psest_1713: Psest_1713 - Protein of unknown function (DUF2897)., at 1,820,147 to 1,820,314 _1713 Psest_1714: Psest_1714 - orotidine 5'-phosphate decarboxylase, subfamily 1, at 1,820,502 to 1,821,197 _1714 Psest_1715: Psest_1715 - Putative NADP-dependent oxidoreductases, at 1,821,251 to 1,822,255 _1715 Psest_1716: Psest_1716 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,822,473 to 1,823,234 _1716 Position (kb) 1821 1822 1823Strain fitness (log2 ratio) -2 -1 0 1 2at 1820.527 kb on + strandat 1820.924 kb on - strand, within Psest_1714at 1820.924 kb on - strand, within Psest_1714at 1821.118 kb on - strand, within Psest_1714at 1821.417 kb on + strand, within Psest_1715at 1821.417 kb on + strand, within Psest_1715at 1821.418 kb on - strand, within Psest_1715at 1821.418 kb on - strand, within Psest_1715at 1821.433 kb on + strand, within Psest_1715at 1821.433 kb on + strand, within Psest_1715at 1821.433 kb on + strand, within Psest_1715at 1821.433 kb on + strand, within Psest_1715at 1821.434 kb on - strand, within Psest_1715at 1821.434 kb on - strand, within Psest_1715at 1821.434 kb on - strand, within Psest_1715at 1821.434 kb on - strand, within Psest_1715at 1821.434 kb on - strand, within Psest_1715at 1821.434 kb on - strand, within Psest_1715at 1821.434 kb on - strand, within Psest_1715at 1821.471 kb on + strand, within Psest_1715at 1821.471 kb on + strand, within Psest_1715at 1821.472 kb on - strand, within Psest_1715at 1821.472 kb on - strand, within Psest_1715at 1821.472 kb on - strand, within Psest_1715at 1821.507 kb on + strand, within Psest_1715at 1821.507 kb on + strand, within Psest_1715at 1821.508 kb on - strand, within Psest_1715at 1821.600 kb on + strand, within Psest_1715at 1821.600 kb on + strand, within Psest_1715at 1821.600 kb on + strand, within Psest_1715at 1821.601 kb on - strand, within Psest_1715at 1821.601 kb on - strand, within Psest_1715at 1821.661 kb on - strand, within Psest_1715at 1821.923 kb on - strand, within Psest_1715at 1821.924 kb on + strand, within Psest_1715at 1821.924 kb on + strand, within Psest_1715at 1821.925 kb on - strand, within Psest_1715at 1821.925 kb on - strand, within Psest_1715at 1821.925 kb on - strand, within Psest_1715at 1821.925 kb on - strand, within Psest_1715at 1821.948 kb on + strand, within Psest_1715at 1821.948 kb on + strand, within Psest_1715at 1821.948 kb on + strand, within Psest_1715at 1821.949 kb on - strand, within Psest_1715at 1821.951 kb on + strand, within Psest_1715at 1821.952 kb on - strand, within Psest_1715at 1821.952 kb on - strand, within Psest_1715at 1821.952 kb on - strand, within Psest_1715at 1821.965 kb on + strand, within Psest_1715at 1821.977 kb on + strand, within Psest_1715at 1821.978 kb on - strand, within Psest_1715at 1821.996 kb on + strand, within Psest_1715at 1821.996 kb on + strand, within Psest_1715at 1822.074 kb on + strand, within Psest_1715at 1822.074 kb on + strand, within Psest_1715at 1822.075 kb on - strand, within Psest_1715at 1822.075 kb on - strand, within Psest_1715at 1822.075 kb on - strand, within Psest_1715at 1822.075 kb on - strand, within Psest_1715at 1822.075 kb on - strand, within Psest_1715at 1822.125 kb on + strand, within Psest_1715at 1822.183 kb on - strandat 1822.226 kb on + strandat 1822.260 kb on + strandat 1822.260 kb on + strandat 1822.260 kb on + strandat 1822.261 kb on + strandat 1822.261 kb on - strandat 1822.261 kb on - strandat 1822.261 kb on - strandat 1822.316 kb on + strandat 1822.316 kb on + strandat 1822.316 kb on + strandat 1822.316 kb on + strandat 1822.317 kb on - strandat 1822.357 kb on + strandat 1822.357 kb on + strandat 1822.357 kb on + strandat 1822.358 kb on - strandat 1822.358 kb on - strandat 1822.375 kb on + strandat 1822.375 kb on + strandat 1822.375 kb on + strandat 1822.375 kb on + strandat 1822.376 kb on - strandat 1822.398 kb on - strandat 1822.399 kb on + strandat 1822.400 kb on - strandat 1822.419 kb on + strandat 1822.419 kb on + strandat 1822.419 kb on + strandat 1822.420 kb on - strandat 1822.420 kb on - strandat 1822.420 kb on - strandat 1822.420 kb on - strandat 1822.420 kb on - strandat 1822.420 kb on - strandat 1822.937 kb on + strand, within Psest_1716at 1822.937 kb on + strand, within Psest_1716at 1822.937 kb on + strand, within Psest_1716at 1822.938 kb on - strand, within Psest_1716at 1822.941 kb on + strand, within Psest_1716at 1822.941 kb on + strand, within Psest_1716at 1822.942 kb on - strand, within Psest_1716at 1823.067 kb on + strand, within Psest_1716at 1823.160 kb on + strandat 1823.160 kb on + strandat 1823.160 kb on + strandat 1823.160 kb on + strandat 1823.160 kb on + strandat 1823.161 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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1,820,527 + +0.2
1,820,924 - Psest_1714 0.61 -1.6
1,820,924 - Psest_1714 0.61 -1.1
1,821,118 - Psest_1714 0.89 -0.4
1,821,417 + Psest_1715 0.17 -0.4
1,821,417 + Psest_1715 0.17 +0.5
1,821,418 - Psest_1715 0.17 +1.4
1,821,418 - Psest_1715 0.17 +1.1
1,821,433 + Psest_1715 0.18 +0.3
1,821,433 + Psest_1715 0.18 +0.7
1,821,433 + Psest_1715 0.18 +0.6
1,821,433 + Psest_1715 0.18 +1.1
1,821,434 - Psest_1715 0.18 -0.4
1,821,434 - Psest_1715 0.18 +1.3
1,821,434 - Psest_1715 0.18 +0.9
1,821,434 - Psest_1715 0.18 +0.5
1,821,434 - Psest_1715 0.18 +0.9
1,821,434 - Psest_1715 0.18 +0.6
1,821,434 - Psest_1715 0.18 -0.6
1,821,471 + Psest_1715 0.22 +0.0
1,821,471 + Psest_1715 0.22 +0.9
1,821,472 - Psest_1715 0.22 +1.8
1,821,472 - Psest_1715 0.22 +0.8
1,821,472 - Psest_1715 0.22 +0.2
1,821,507 + Psest_1715 0.25 -0.9
1,821,507 + Psest_1715 0.25 +0.2
1,821,508 - Psest_1715 0.26 -0.3
1,821,600 + Psest_1715 0.35 +1.7
1,821,600 + Psest_1715 0.35 -1.2
1,821,600 + Psest_1715 0.35 +1.1
1,821,601 - Psest_1715 0.35 +1.1
1,821,601 - Psest_1715 0.35 +1.3
1,821,661 - Psest_1715 0.41 +1.8
1,821,923 - Psest_1715 0.67 +1.3
1,821,924 + Psest_1715 0.67 -0.5
1,821,924 + Psest_1715 0.67 +0.6
1,821,925 - Psest_1715 0.67 +0.2
1,821,925 - Psest_1715 0.67 -0.4
1,821,925 - Psest_1715 0.67 -0.3
1,821,925 - Psest_1715 0.67 +0.4
1,821,948 + Psest_1715 0.69 +0.6
1,821,948 + Psest_1715 0.69 -0.6
1,821,948 + Psest_1715 0.69 -0.6
1,821,949 - Psest_1715 0.69 -1.0
1,821,951 + Psest_1715 0.70 -0.0
1,821,952 - Psest_1715 0.70 +0.4
1,821,952 - Psest_1715 0.70 +0.5
1,821,952 - Psest_1715 0.70 +1.4
1,821,965 + Psest_1715 0.71 -0.3
1,821,977 + Psest_1715 0.72 -0.7
1,821,978 - Psest_1715 0.72 +0.1
1,821,996 + Psest_1715 0.74 +2.3
1,821,996 + Psest_1715 0.74 +0.6
1,822,074 + Psest_1715 0.82 -0.1
1,822,074 + Psest_1715 0.82 +0.2
1,822,075 - Psest_1715 0.82 -0.3
1,822,075 - Psest_1715 0.82 +0.2
1,822,075 - Psest_1715 0.82 +1.4
1,822,075 - Psest_1715 0.82 +0.9
1,822,075 - Psest_1715 0.82 +1.6
1,822,125 + Psest_1715 0.87 -0.1
1,822,183 - -2.0
1,822,226 + +0.1
1,822,260 + +0.2
1,822,260 + +0.6
1,822,260 + +0.5
1,822,261 + +1.3
1,822,261 - +0.3
1,822,261 - +0.6
1,822,261 - -0.6
1,822,316 + -0.1
1,822,316 + +0.2
1,822,316 + +1.4
1,822,316 + -0.2
1,822,317 - -0.2
1,822,357 + +1.5
1,822,357 + +1.0
1,822,357 + -0.2
1,822,358 - -0.8
1,822,358 - -1.6
1,822,375 + +0.6
1,822,375 + +0.2
1,822,375 + -1.8
1,822,375 + -0.6
1,822,376 - -0.3
1,822,398 - +0.8
1,822,399 + +0.6
1,822,400 - -0.4
1,822,419 + +1.5
1,822,419 + -0.4
1,822,419 + -0.2
1,822,420 - +1.2
1,822,420 - +0.8
1,822,420 - +0.3
1,822,420 - -1.8
1,822,420 - -1.4
1,822,420 - +0.4
1,822,937 + Psest_1716 0.61 +0.3
1,822,937 + Psest_1716 0.61 +0.0
1,822,937 + Psest_1716 0.61 +0.5
1,822,938 - Psest_1716 0.61 -1.8
1,822,941 + Psest_1716 0.61 +2.0
1,822,941 + Psest_1716 0.61 +0.7
1,822,942 - Psest_1716 0.62 -2.0
1,823,067 + Psest_1716 0.78 +0.9
1,823,160 + -1.3
1,823,160 + +1.0
1,823,160 + +0.9
1,823,160 + +2.4
1,823,160 + -0.6
1,823,161 - +0.5

Or see this region's nucleotide sequence