Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1713 and Psest_1714 are separated by 187 nucleotides Psest_1714 and Psest_1715 are separated by 53 nucleotides Psest_1715 and Psest_1716 are separated by 217 nucleotides
Psest_1713: Psest_1713 - Protein of unknown function (DUF2897)., at 1,820,147 to 1,820,314
_1713
Psest_1714: Psest_1714 - orotidine 5'-phosphate decarboxylase, subfamily 1, at 1,820,502 to 1,821,197
_1714
Psest_1715: Psest_1715 - Putative NADP-dependent oxidoreductases, at 1,821,251 to 1,822,255
_1715
Psest_1716: Psest_1716 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 1,822,473 to 1,823,234
_1716
Position (kb)
1821
1822
1823 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1820.527 kb on + strand at 1820.924 kb on - strand, within Psest_1714 at 1820.924 kb on - strand, within Psest_1714 at 1821.118 kb on - strand, within Psest_1714 at 1821.417 kb on + strand, within Psest_1715 at 1821.417 kb on + strand, within Psest_1715 at 1821.418 kb on - strand, within Psest_1715 at 1821.418 kb on - strand, within Psest_1715 at 1821.433 kb on + strand, within Psest_1715 at 1821.433 kb on + strand, within Psest_1715 at 1821.433 kb on + strand, within Psest_1715 at 1821.433 kb on + strand, within Psest_1715 at 1821.434 kb on - strand, within Psest_1715 at 1821.434 kb on - strand, within Psest_1715 at 1821.434 kb on - strand, within Psest_1715 at 1821.434 kb on - strand, within Psest_1715 at 1821.434 kb on - strand, within Psest_1715 at 1821.434 kb on - strand, within Psest_1715 at 1821.434 kb on - strand, within Psest_1715 at 1821.471 kb on + strand, within Psest_1715 at 1821.471 kb on + strand, within Psest_1715 at 1821.472 kb on - strand, within Psest_1715 at 1821.472 kb on - strand, within Psest_1715 at 1821.472 kb on - strand, within Psest_1715 at 1821.507 kb on + strand, within Psest_1715 at 1821.507 kb on + strand, within Psest_1715 at 1821.508 kb on - strand, within Psest_1715 at 1821.600 kb on + strand, within Psest_1715 at 1821.600 kb on + strand, within Psest_1715 at 1821.600 kb on + strand, within Psest_1715 at 1821.601 kb on - strand, within Psest_1715 at 1821.601 kb on - strand, within Psest_1715 at 1821.661 kb on - strand, within Psest_1715 at 1821.923 kb on - strand, within Psest_1715 at 1821.924 kb on + strand, within Psest_1715 at 1821.924 kb on + strand, within Psest_1715 at 1821.925 kb on - strand, within Psest_1715 at 1821.925 kb on - strand, within Psest_1715 at 1821.925 kb on - strand, within Psest_1715 at 1821.925 kb on - strand, within Psest_1715 at 1821.948 kb on + strand, within Psest_1715 at 1821.948 kb on + strand, within Psest_1715 at 1821.948 kb on + strand, within Psest_1715 at 1821.949 kb on - strand, within Psest_1715 at 1821.951 kb on + strand, within Psest_1715 at 1821.952 kb on - strand, within Psest_1715 at 1821.952 kb on - strand, within Psest_1715 at 1821.952 kb on - strand, within Psest_1715 at 1821.965 kb on + strand, within Psest_1715 at 1821.977 kb on + strand, within Psest_1715 at 1821.978 kb on - strand, within Psest_1715 at 1821.996 kb on + strand, within Psest_1715 at 1821.996 kb on + strand, within Psest_1715 at 1822.074 kb on + strand, within Psest_1715 at 1822.074 kb on + strand, within Psest_1715 at 1822.075 kb on - strand, within Psest_1715 at 1822.075 kb on - strand, within Psest_1715 at 1822.075 kb on - strand, within Psest_1715 at 1822.075 kb on - strand, within Psest_1715 at 1822.075 kb on - strand, within Psest_1715 at 1822.125 kb on + strand, within Psest_1715 at 1822.183 kb on - strand at 1822.226 kb on + strand at 1822.260 kb on + strand at 1822.260 kb on + strand at 1822.260 kb on + strand at 1822.261 kb on + strand at 1822.261 kb on - strand at 1822.261 kb on - strand at 1822.261 kb on - strand at 1822.316 kb on + strand at 1822.316 kb on + strand at 1822.316 kb on + strand at 1822.316 kb on + strand at 1822.317 kb on - strand at 1822.357 kb on + strand at 1822.357 kb on + strand at 1822.357 kb on + strand at 1822.358 kb on - strand at 1822.358 kb on - strand at 1822.375 kb on + strand at 1822.375 kb on + strand at 1822.375 kb on + strand at 1822.375 kb on + strand at 1822.376 kb on - strand at 1822.398 kb on - strand at 1822.399 kb on + strand at 1822.400 kb on - strand at 1822.419 kb on + strand at 1822.419 kb on + strand at 1822.419 kb on + strand at 1822.420 kb on - strand at 1822.420 kb on - strand at 1822.420 kb on - strand at 1822.420 kb on - strand at 1822.420 kb on - strand at 1822.420 kb on - strand at 1822.937 kb on + strand, within Psest_1716 at 1822.937 kb on + strand, within Psest_1716 at 1822.937 kb on + strand, within Psest_1716 at 1822.938 kb on - strand, within Psest_1716 at 1822.941 kb on + strand, within Psest_1716 at 1822.941 kb on + strand, within Psest_1716 at 1822.942 kb on - strand, within Psest_1716 at 1823.067 kb on + strand, within Psest_1716 at 1823.160 kb on + strand at 1823.160 kb on + strand at 1823.160 kb on + strand at 1823.160 kb on + strand at 1823.160 kb on + strand at 1823.161 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 1,820,527 + +0.2 1,820,924 - Psest_1714 0.61 -1.6 1,820,924 - Psest_1714 0.61 -1.1 1,821,118 - Psest_1714 0.89 -0.4 1,821,417 + Psest_1715 0.17 -0.4 1,821,417 + Psest_1715 0.17 +0.5 1,821,418 - Psest_1715 0.17 +1.4 1,821,418 - Psest_1715 0.17 +1.1 1,821,433 + Psest_1715 0.18 +0.3 1,821,433 + Psest_1715 0.18 +0.7 1,821,433 + Psest_1715 0.18 +0.6 1,821,433 + Psest_1715 0.18 +1.1 1,821,434 - Psest_1715 0.18 -0.4 1,821,434 - Psest_1715 0.18 +1.3 1,821,434 - Psest_1715 0.18 +0.9 1,821,434 - Psest_1715 0.18 +0.5 1,821,434 - Psest_1715 0.18 +0.9 1,821,434 - Psest_1715 0.18 +0.6 1,821,434 - Psest_1715 0.18 -0.6 1,821,471 + Psest_1715 0.22 +0.0 1,821,471 + Psest_1715 0.22 +0.9 1,821,472 - Psest_1715 0.22 +1.8 1,821,472 - Psest_1715 0.22 +0.8 1,821,472 - Psest_1715 0.22 +0.2 1,821,507 + Psest_1715 0.25 -0.9 1,821,507 + Psest_1715 0.25 +0.2 1,821,508 - Psest_1715 0.26 -0.3 1,821,600 + Psest_1715 0.35 +1.7 1,821,600 + Psest_1715 0.35 -1.2 1,821,600 + Psest_1715 0.35 +1.1 1,821,601 - Psest_1715 0.35 +1.1 1,821,601 - Psest_1715 0.35 +1.3 1,821,661 - Psest_1715 0.41 +1.8 1,821,923 - Psest_1715 0.67 +1.3 1,821,924 + Psest_1715 0.67 -0.5 1,821,924 + Psest_1715 0.67 +0.6 1,821,925 - Psest_1715 0.67 +0.2 1,821,925 - Psest_1715 0.67 -0.4 1,821,925 - Psest_1715 0.67 -0.3 1,821,925 - Psest_1715 0.67 +0.4 1,821,948 + Psest_1715 0.69 +0.6 1,821,948 + Psest_1715 0.69 -0.6 1,821,948 + Psest_1715 0.69 -0.6 1,821,949 - Psest_1715 0.69 -1.0 1,821,951 + Psest_1715 0.70 -0.0 1,821,952 - Psest_1715 0.70 +0.4 1,821,952 - Psest_1715 0.70 +0.5 1,821,952 - Psest_1715 0.70 +1.4 1,821,965 + Psest_1715 0.71 -0.3 1,821,977 + Psest_1715 0.72 -0.7 1,821,978 - Psest_1715 0.72 +0.1 1,821,996 + Psest_1715 0.74 +2.3 1,821,996 + Psest_1715 0.74 +0.6 1,822,074 + Psest_1715 0.82 -0.1 1,822,074 + Psest_1715 0.82 +0.2 1,822,075 - Psest_1715 0.82 -0.3 1,822,075 - Psest_1715 0.82 +0.2 1,822,075 - Psest_1715 0.82 +1.4 1,822,075 - Psest_1715 0.82 +0.9 1,822,075 - Psest_1715 0.82 +1.6 1,822,125 + Psest_1715 0.87 -0.1 1,822,183 - -2.0 1,822,226 + +0.1 1,822,260 + +0.2 1,822,260 + +0.6 1,822,260 + +0.5 1,822,261 + +1.3 1,822,261 - +0.3 1,822,261 - +0.6 1,822,261 - -0.6 1,822,316 + -0.1 1,822,316 + +0.2 1,822,316 + +1.4 1,822,316 + -0.2 1,822,317 - -0.2 1,822,357 + +1.5 1,822,357 + +1.0 1,822,357 + -0.2 1,822,358 - -0.8 1,822,358 - -1.6 1,822,375 + +0.6 1,822,375 + +0.2 1,822,375 + -1.8 1,822,375 + -0.6 1,822,376 - -0.3 1,822,398 - +0.8 1,822,399 + +0.6 1,822,400 - -0.4 1,822,419 + +1.5 1,822,419 + -0.4 1,822,419 + -0.2 1,822,420 - +1.2 1,822,420 - +0.8 1,822,420 - +0.3 1,822,420 - -1.8 1,822,420 - -1.4 1,822,420 - +0.4 1,822,937 + Psest_1716 0.61 +0.3 1,822,937 + Psest_1716 0.61 +0.0 1,822,937 + Psest_1716 0.61 +0.5 1,822,938 - Psest_1716 0.61 -1.8 1,822,941 + Psest_1716 0.61 +2.0 1,822,941 + Psest_1716 0.61 +0.7 1,822,942 - Psest_1716 0.62 -2.0 1,823,067 + Psest_1716 0.78 +0.9 1,823,160 + -1.3 1,823,160 + +1.0 1,823,160 + +0.9 1,823,160 + +2.4 1,823,160 + -0.6 1,823,161 - +0.5
Or see this region's nucleotide sequence