Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0163 and Psest_0164 are separated by 2 nucleotides Psest_0164 and Psest_0165 are separated by 64 nucleotides Psest_0165 and Psest_0166 are separated by 51 nucleotides Psest_0166 and Psest_0167 are separated by 213 nucleotides Psest_0167 and Psest_0168 are separated by 1 nucleotides
Psest_0163: Psest_0163 - Rhodanese-related sulfurtransferase, at 162,307 to 162,720
_0163
Psest_0164: Psest_0164 - Glutaredoxin, GrxC family, at 162,723 to 162,977
_0164
Psest_0165: Psest_0165 - protein-export chaperone SecB, at 163,042 to 163,536
_0165
Psest_0166: Psest_0166 - NADPH:quinone reductase and related Zn-dependent oxidoreductases, at 163,588 to 164,568
_0166
Psest_0167: Psest_0167 - Flagellar basal body-associated protein, at 164,782 to 165,183
_0167
Psest_0168: Psest_0168 - Uncharacterized conserved protein, at 165,185 to 165,634
_0168
Position (kb) 163
164
165 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 162.718 kb on + strand at 162.718 kb on + strand at 162.718 kb on + strand at 162.718 kb on + strand at 162.718 kb on + strand at 162.718 kb on + strand at 162.718 kb on + strand at 162.718 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.741 kb on + strand at 162.742 kb on - strand at 162.742 kb on - strand at 162.742 kb on - strand at 162.742 kb on - strand at 162.742 kb on - strand at 162.742 kb on - strand at 162.742 kb on - strand at 162.743 kb on + strand at 162.743 kb on + strand at 162.807 kb on + strand, within Psest_0164 at 163.028 kb on - strand at 163.028 kb on - strand at 163.056 kb on + strand at 163.057 kb on - strand at 163.117 kb on + strand, within Psest_0165 at 163.118 kb on - strand, within Psest_0165 at 163.118 kb on - strand, within Psest_0165 at 163.477 kb on + strand, within Psest_0165 at 163.477 kb on + strand, within Psest_0165 at 163.477 kb on + strand, within Psest_0165 at 163.735 kb on - strand, within Psest_0166 at 163.931 kb on + strand, within Psest_0166 at 163.931 kb on + strand, within Psest_0166 at 163.931 kb on + strand, within Psest_0166 at 163.931 kb on + strand, within Psest_0166 at 163.931 kb on + strand, within Psest_0166 at 163.931 kb on + strand, within Psest_0166 at 163.931 kb on + strand, within Psest_0166 at 163.931 kb on + strand, within Psest_0166 at 163.931 kb on + strand, within Psest_0166 at 163.931 kb on + strand, within Psest_0166 at 163.931 kb on + strand, within Psest_0166 at 163.931 kb on + strand, within Psest_0166 at 163.932 kb on - strand, within Psest_0166 at 163.932 kb on - strand, within Psest_0166 at 163.932 kb on - strand, within Psest_0166 at 163.932 kb on - strand, within Psest_0166 at 163.932 kb on - strand, within Psest_0166 at 163.932 kb on - strand, within Psest_0166 at 163.998 kb on - strand, within Psest_0166 at 163.998 kb on - strand, within Psest_0166 at 163.998 kb on - strand, within Psest_0166 at 164.175 kb on + strand, within Psest_0166 at 164.198 kb on + strand, within Psest_0166 at 164.198 kb on + strand, within Psest_0166 at 164.198 kb on + strand, within Psest_0166 at 164.198 kb on + strand, within Psest_0166 at 164.198 kb on + strand, within Psest_0166 at 164.198 kb on + strand, within Psest_0166 at 164.199 kb on - strand, within Psest_0166 at 164.199 kb on - strand, within Psest_0166 at 164.417 kb on + strand, within Psest_0166 at 164.417 kb on + strand, within Psest_0166 at 164.417 kb on + strand, within Psest_0166 at 164.417 kb on + strand, within Psest_0166 at 164.417 kb on + strand, within Psest_0166 at 164.418 kb on - strand, within Psest_0166 at 164.418 kb on - strand, within Psest_0166 at 164.418 kb on - strand, within Psest_0166 at 164.418 kb on - strand, within Psest_0166 at 164.418 kb on - strand, within Psest_0166 at 164.626 kb on - strand at 164.644 kb on + strand at 164.644 kb on + strand at 164.645 kb on - strand at 164.645 kb on - strand at 164.695 kb on + strand at 164.696 kb on - strand at 164.696 kb on - strand at 164.696 kb on - strand at 164.696 kb on - strand at 164.697 kb on + strand at 164.697 kb on + strand at 164.697 kb on + strand at 164.697 kb on + strand at 164.698 kb on - strand at 164.788 kb on + strand at 164.875 kb on + strand, within Psest_0167 at 164.876 kb on - strand, within Psest_0167 at 164.878 kb on + strand, within Psest_0167 at 164.908 kb on + strand, within Psest_0167 at 164.908 kb on + strand, within Psest_0167 at 164.908 kb on + strand, within Psest_0167 at 164.908 kb on + strand, within Psest_0167 at 164.908 kb on + strand, within Psest_0167 at 164.908 kb on + strand, within Psest_0167 at 164.908 kb on + strand, within Psest_0167 at 164.908 kb on + strand, within Psest_0167 at 164.908 kb on + strand, within Psest_0167 at 164.908 kb on + strand, within Psest_0167 at 164.908 kb on + strand, within Psest_0167 at 164.908 kb on + strand, within Psest_0167 at 164.909 kb on - strand, within Psest_0167 at 164.909 kb on - strand, within Psest_0167 at 164.909 kb on - strand, within Psest_0167 at 164.909 kb on - strand, within Psest_0167 at 164.909 kb on - strand, within Psest_0167 at 164.909 kb on - strand, within Psest_0167 at 164.909 kb on - strand, within Psest_0167 at 164.932 kb on + strand, within Psest_0167 at 164.932 kb on + strand, within Psest_0167 at 164.932 kb on + strand, within Psest_0167 at 164.932 kb on + strand, within Psest_0167 at 164.932 kb on + strand, within Psest_0167 at 164.933 kb on - strand, within Psest_0167 at 164.933 kb on - strand, within Psest_0167 at 164.933 kb on - strand, within Psest_0167 at 164.935 kb on + strand, within Psest_0167 at 164.935 kb on + strand, within Psest_0167 at 164.935 kb on + strand, within Psest_0167 at 164.935 kb on + strand, within Psest_0167 at 164.935 kb on + strand, within Psest_0167 at 164.935 kb on + strand, within Psest_0167 at 164.935 kb on + strand, within Psest_0167 at 164.936 kb on - strand, within Psest_0167 at 164.936 kb on - strand, within Psest_0167 at 164.936 kb on - strand, within Psest_0167 at 164.936 kb on - strand, within Psest_0167 at 164.936 kb on - strand, within Psest_0167 at 164.936 kb on - strand, within Psest_0167 at 164.936 kb on - strand, within Psest_0167 at 164.936 kb on - strand, within Psest_0167 at 164.936 kb on - strand, within Psest_0167 at 164.936 kb on - strand, within Psest_0167 at 165.135 kb on + strand, within Psest_0167 at 165.136 kb on - strand, within Psest_0167 at 165.486 kb on + strand, within Psest_0168 at 165.486 kb on + strand, within Psest_0168 at 165.487 kb on - strand, within Psest_0168 at 165.487 kb on - strand, within Psest_0168 at 165.487 kb on - strand, within Psest_0168 at 165.487 kb on - strand, within Psest_0168 at 165.487 kb on - strand, within Psest_0168 at 165.514 kb on + strand, within Psest_0168 at 165.514 kb on + strand, within Psest_0168 at 165.514 kb on + strand, within Psest_0168 at 165.515 kb on - strand, within Psest_0168 at 165.515 kb on - strand, within Psest_0168 at 165.541 kb on - strand, within Psest_0168 at 165.549 kb on - strand, within Psest_0168
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 162,718 + +0.1 162,718 + +0.9 162,718 + -0.2 162,718 + -0.1 162,718 + -0.8 162,718 + +0.1 162,718 + +0.4 162,718 + +0.9 162,741 + +0.5 162,741 + -0.5 162,741 + +0.6 162,741 + +0.7 162,741 + +3.5 162,741 + -1.4 162,741 + +0.9 162,741 + +0.5 162,741 + -1.9 162,741 + -0.2 162,741 + -0.3 162,741 + +0.2 162,741 + +0.3 162,741 + +0.9 162,741 + -0.6 162,741 + +1.4 162,741 + +0.4 162,741 + +1.8 162,741 + -0.9 162,741 + +1.2 162,741 + -0.3 162,742 - +2.2 162,742 - +2.6 162,742 - +1.1 162,742 - +2.9 162,742 - +2.6 162,742 - +2.5 162,742 - +2.6 162,743 + +0.5 162,743 + -0.3 162,807 + Psest_0164 0.33 +0.6 163,028 - -2.2 163,028 - +0.9 163,056 + -2.1 163,057 - -0.7 163,117 + Psest_0165 0.15 -2.2 163,118 - Psest_0165 0.15 -1.1 163,118 - Psest_0165 0.15 -1.4 163,477 + Psest_0165 0.88 +3.8 163,477 + Psest_0165 0.88 +3.2 163,477 + Psest_0165 0.88 +3.3 163,735 - Psest_0166 0.15 +0.4 163,931 + Psest_0166 0.35 +0.7 163,931 + Psest_0166 0.35 +0.4 163,931 + Psest_0166 0.35 -0.1 163,931 + Psest_0166 0.35 -1.1 163,931 + Psest_0166 0.35 -0.1 163,931 + Psest_0166 0.35 +0.8 163,931 + Psest_0166 0.35 -0.3 163,931 + Psest_0166 0.35 +0.7 163,931 + Psest_0166 0.35 -0.2 163,931 + Psest_0166 0.35 +2.5 163,931 + Psest_0166 0.35 -0.7 163,931 + Psest_0166 0.35 +1.3 163,932 - Psest_0166 0.35 +0.3 163,932 - Psest_0166 0.35 -0.7 163,932 - Psest_0166 0.35 -1.1 163,932 - Psest_0166 0.35 +0.3 163,932 - Psest_0166 0.35 +0.8 163,932 - Psest_0166 0.35 +0.6 163,998 - Psest_0166 0.42 +0.3 163,998 - Psest_0166 0.42 +1.0 163,998 - Psest_0166 0.42 +0.5 164,175 + Psest_0166 0.60 +0.0 164,198 + Psest_0166 0.62 +0.0 164,198 + Psest_0166 0.62 -0.8 164,198 + Psest_0166 0.62 +0.8 164,198 + Psest_0166 0.62 +1.5 164,198 + Psest_0166 0.62 +0.5 164,198 + Psest_0166 0.62 +1.9 164,199 - Psest_0166 0.62 +0.5 164,199 - Psest_0166 0.62 +0.4 164,417 + Psest_0166 0.85 -1.7 164,417 + Psest_0166 0.85 -1.1 164,417 + Psest_0166 0.85 -0.3 164,417 + Psest_0166 0.85 +0.3 164,417 + Psest_0166 0.85 -1.5 164,418 - Psest_0166 0.85 +0.8 164,418 - Psest_0166 0.85 -0.1 164,418 - Psest_0166 0.85 +0.5 164,418 - Psest_0166 0.85 +0.3 164,418 - Psest_0166 0.85 +0.4 164,626 - +0.0 164,644 + +1.2 164,644 + -0.3 164,645 - -0.4 164,645 - +0.6 164,695 + +0.1 164,696 - -2.7 164,696 - +0.6 164,696 - +1.2 164,696 - -0.6 164,697 + +1.7 164,697 + -0.1 164,697 + -0.3 164,697 + +0.4 164,698 - -0.7 164,788 + +1.1 164,875 + Psest_0167 0.23 +0.6 164,876 - Psest_0167 0.23 -0.8 164,878 + Psest_0167 0.24 +1.4 164,908 + Psest_0167 0.31 -0.8 164,908 + Psest_0167 0.31 -0.9 164,908 + Psest_0167 0.31 -0.0 164,908 + Psest_0167 0.31 +0.3 164,908 + Psest_0167 0.31 -0.8 164,908 + Psest_0167 0.31 -0.2 164,908 + Psest_0167 0.31 -1.9 164,908 + Psest_0167 0.31 +1.5 164,908 + Psest_0167 0.31 -1.9 164,908 + Psest_0167 0.31 -0.4 164,908 + Psest_0167 0.31 -2.4 164,908 + Psest_0167 0.31 -0.1 164,909 - Psest_0167 0.32 -1.4 164,909 - Psest_0167 0.32 -1.4 164,909 - Psest_0167 0.32 +0.9 164,909 - Psest_0167 0.32 +0.1 164,909 - Psest_0167 0.32 -0.1 164,909 - Psest_0167 0.32 -1.6 164,909 - Psest_0167 0.32 -1.5 164,932 + Psest_0167 0.37 -1.6 164,932 + Psest_0167 0.37 +0.0 164,932 + Psest_0167 0.37 -0.7 164,932 + Psest_0167 0.37 -1.1 164,932 + Psest_0167 0.37 -0.0 164,933 - Psest_0167 0.38 +0.1 164,933 - Psest_0167 0.38 -1.1 164,933 - Psest_0167 0.38 -2.3 164,935 + Psest_0167 0.38 +2.1 164,935 + Psest_0167 0.38 -1.7 164,935 + Psest_0167 0.38 +2.0 164,935 + Psest_0167 0.38 -0.4 164,935 + Psest_0167 0.38 -0.6 164,935 + Psest_0167 0.38 -0.1 164,935 + Psest_0167 0.38 -0.3 164,936 - Psest_0167 0.38 -0.7 164,936 - Psest_0167 0.38 -2.7 164,936 - Psest_0167 0.38 -0.5 164,936 - Psest_0167 0.38 -0.2 164,936 - Psest_0167 0.38 -0.8 164,936 - Psest_0167 0.38 -0.7 164,936 - Psest_0167 0.38 +0.2 164,936 - Psest_0167 0.38 -0.1 164,936 - Psest_0167 0.38 -1.4 164,936 - Psest_0167 0.38 -0.7 165,135 + Psest_0167 0.88 -4.8 165,136 - Psest_0167 0.88 +0.2 165,486 + Psest_0168 0.67 -0.4 165,486 + Psest_0168 0.67 -1.4 165,487 - Psest_0168 0.67 +0.1 165,487 - Psest_0168 0.67 -1.9 165,487 - Psest_0168 0.67 -0.9 165,487 - Psest_0168 0.67 -0.1 165,487 - Psest_0168 0.67 -0.1 165,514 + Psest_0168 0.73 -0.9 165,514 + Psest_0168 0.73 -0.7 165,514 + Psest_0168 0.73 -0.4 165,515 - Psest_0168 0.73 +0.7 165,515 - Psest_0168 0.73 -2.1 165,541 - Psest_0168 0.79 +0.3 165,549 - Psest_0168 0.81 -3.0
Or see this region's nucleotide sequence