Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1509 and Psest_1510 are separated by 41 nucleotides Psest_1510 and Psest_1511 are separated by 110 nucleotides Psest_1511 and Psest_1512 are separated by 21 nucleotides
Psest_1509: Psest_1509 - quinolinate synthetase complex, A subunit, at 1,608,737 to 1,609,795
_1509
Psest_1510: Psest_1510 - Putative Zn-dependent protease, contains TPR repeats, at 1,609,837 to 1,611,267
_1510
Psest_1511: Psest_1511 - Predicted redox protein, regulator of disulfide bond formation, at 1,611,378 to 1,611,629
_1511
Psest_1512: Psest_1512 - Predicted permease, at 1,611,651 to 1,612,727
_1512
Position (kb)
1609
1610
1611
1612 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1608.882 kb on - strand, within Psest_1509 at 1608.882 kb on - strand, within Psest_1509 at 1608.882 kb on - strand, within Psest_1509 at 1608.882 kb on - strand, within Psest_1509 at 1608.884 kb on + strand, within Psest_1509 at 1608.885 kb on - strand, within Psest_1509 at 1608.885 kb on - strand, within Psest_1509 at 1608.885 kb on - strand, within Psest_1509 at 1609.154 kb on + strand, within Psest_1509 at 1609.155 kb on - strand, within Psest_1509 at 1609.155 kb on - strand, within Psest_1509 at 1609.155 kb on - strand, within Psest_1509 at 1609.289 kb on + strand, within Psest_1509 at 1609.289 kb on + strand, within Psest_1509 at 1609.289 kb on + strand, within Psest_1509 at 1609.290 kb on - strand, within Psest_1509 at 1609.290 kb on - strand, within Psest_1509 at 1609.290 kb on - strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.541 kb on + strand, within Psest_1509 at 1609.542 kb on - strand, within Psest_1509 at 1609.542 kb on - strand, within Psest_1509 at 1609.967 kb on + strand at 1609.989 kb on - strand, within Psest_1510 at 1609.989 kb on - strand, within Psest_1510 at 1610.140 kb on + strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.141 kb on - strand, within Psest_1510 at 1610.169 kb on - strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.264 kb on + strand, within Psest_1510 at 1610.265 kb on - strand, within Psest_1510 at 1610.265 kb on - strand, within Psest_1510 at 1611.072 kb on - strand, within Psest_1510 at 1611.072 kb on - strand, within Psest_1510 at 1611.072 kb on - strand, within Psest_1510 at 1611.142 kb on + strand at 1611.142 kb on + strand at 1611.143 kb on - strand at 1611.143 kb on - strand at 1611.288 kb on + strand at 1611.302 kb on + strand at 1611.302 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.342 kb on + strand at 1611.343 kb on - strand at 1611.343 kb on - strand at 1611.343 kb on - strand at 1611.343 kb on - strand at 1611.343 kb on - strand at 1611.343 kb on - strand at 1611.346 kb on + strand at 1611.347 kb on - strand at 1611.347 kb on - strand at 1611.347 kb on - strand at 1611.406 kb on + strand, within Psest_1511 at 1611.407 kb on - strand, within Psest_1511 at 1611.407 kb on - strand, within Psest_1511 at 1611.421 kb on + strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.422 kb on - strand, within Psest_1511 at 1611.604 kb on - strand at 1611.609 kb on + strand at 1611.648 kb on + strand at 1611.648 kb on + strand at 1611.648 kb on + strand at 1611.648 kb on + strand at 1611.649 kb on - strand at 1611.649 kb on - strand at 1611.649 kb on - strand at 1611.661 kb on + strand at 1611.661 kb on + strand at 1611.661 kb on + strand at 1611.661 kb on + strand at 1611.684 kb on + strand at 1611.685 kb on - strand at 1612.039 kb on + strand, within Psest_1512 at 1612.039 kb on + strand, within Psest_1512 at 1612.040 kb on - strand, within Psest_1512 at 1612.143 kb on + strand, within Psest_1512 at 1612.143 kb on + strand, within Psest_1512 at 1612.143 kb on + strand, within Psest_1512 at 1612.144 kb on - strand, within Psest_1512 at 1612.144 kb on - strand, within Psest_1512 at 1612.144 kb on - strand, within Psest_1512
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 1,608,882 - Psest_1509 0.14 -2.7 1,608,882 - Psest_1509 0.14 -2.3 1,608,882 - Psest_1509 0.14 -3.5 1,608,882 - Psest_1509 0.14 -1.7 1,608,884 + Psest_1509 0.14 -3.7 1,608,885 - Psest_1509 0.14 -3.4 1,608,885 - Psest_1509 0.14 -3.3 1,608,885 - Psest_1509 0.14 -1.3 1,609,154 + Psest_1509 0.39 -1.8 1,609,155 - Psest_1509 0.39 -1.6 1,609,155 - Psest_1509 0.39 -3.1 1,609,155 - Psest_1509 0.39 -1.7 1,609,289 + Psest_1509 0.52 -2.8 1,609,289 + Psest_1509 0.52 -3.9 1,609,289 + Psest_1509 0.52 -3.8 1,609,290 - Psest_1509 0.52 -1.3 1,609,290 - Psest_1509 0.52 -3.3 1,609,290 - Psest_1509 0.52 -2.6 1,609,541 + Psest_1509 0.76 -0.7 1,609,541 + Psest_1509 0.76 -3.0 1,609,541 + Psest_1509 0.76 -3.9 1,609,541 + Psest_1509 0.76 -1.9 1,609,542 - Psest_1509 0.76 -3.0 1,609,542 - Psest_1509 0.76 -1.6 1,609,967 + -1.7 1,609,989 - Psest_1510 0.11 -1.7 1,609,989 - Psest_1510 0.11 -0.7 1,610,140 + Psest_1510 0.21 +0.3 1,610,141 - Psest_1510 0.21 -0.3 1,610,141 - Psest_1510 0.21 -1.0 1,610,141 - Psest_1510 0.21 +0.3 1,610,141 - Psest_1510 0.21 -1.0 1,610,169 - Psest_1510 0.23 -0.7 1,610,264 + Psest_1510 0.30 -0.7 1,610,264 + Psest_1510 0.30 -1.3 1,610,264 + Psest_1510 0.30 -0.3 1,610,264 + Psest_1510 0.30 -0.3 1,610,265 - Psest_1510 0.30 -1.7 1,610,265 - Psest_1510 0.30 -2.0 1,611,072 - Psest_1510 0.86 -1.5 1,611,072 - Psest_1510 0.86 -3.1 1,611,072 - Psest_1510 0.86 -1.9 1,611,142 + -2.5 1,611,142 + -2.6 1,611,143 - -1.3 1,611,143 - -0.7 1,611,288 + -0.8 1,611,302 + -0.9 1,611,302 + +2.1 1,611,342 + +0.4 1,611,342 + +0.3 1,611,342 + -0.3 1,611,342 + +1.8 1,611,342 + -0.6 1,611,342 + +0.0 1,611,342 + +1.3 1,611,342 + -0.2 1,611,342 + +1.6 1,611,342 + +2.2 1,611,342 + -0.7 1,611,342 + +2.4 1,611,342 + +0.3 1,611,342 + -0.0 1,611,343 - +0.4 1,611,343 - +0.4 1,611,343 - +1.8 1,611,343 - -1.7 1,611,343 - +1.3 1,611,343 - +1.5 1,611,346 + +0.8 1,611,347 - -0.6 1,611,347 - +0.8 1,611,347 - -0.3 1,611,406 + Psest_1511 0.11 +0.7 1,611,407 - Psest_1511 0.12 +1.2 1,611,407 - Psest_1511 0.12 +1.6 1,611,421 + Psest_1511 0.17 -1.4 1,611,422 - Psest_1511 0.17 -1.9 1,611,422 - Psest_1511 0.17 -1.8 1,611,422 - Psest_1511 0.17 -1.0 1,611,422 - Psest_1511 0.17 -3.5 1,611,422 - Psest_1511 0.17 -1.7 1,611,422 - Psest_1511 0.17 -4.3 1,611,422 - Psest_1511 0.17 -1.3 1,611,422 - Psest_1511 0.17 -1.9 1,611,604 - -2.4 1,611,609 + -0.5 1,611,648 + -0.2 1,611,648 + +0.2 1,611,648 + -0.9 1,611,648 + -0.2 1,611,649 - +1.3 1,611,649 - -1.2 1,611,649 - +0.6 1,611,661 + +0.6 1,611,661 + -0.3 1,611,661 + -2.3 1,611,661 + -0.5 1,611,684 + +1.6 1,611,685 - -1.8 1,612,039 + Psest_1512 0.36 +1.3 1,612,039 + Psest_1512 0.36 +0.2 1,612,040 - Psest_1512 0.36 +0.1 1,612,143 + Psest_1512 0.46 +0.2 1,612,143 + Psest_1512 0.46 +0.2 1,612,143 + Psest_1512 0.46 +0.3 1,612,144 - Psest_1512 0.46 -0.7 1,612,144 - Psest_1512 0.46 -1.3 1,612,144 - Psest_1512 0.46 -1.7
Or see this region's nucleotide sequence