Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1401 and Psest_1402 are separated by 302 nucleotides Psest_1402 and Psest_1403 are separated by 100 nucleotides Psest_1403 and Psest_1404 are separated by 206 nucleotides
Psest_1401: Psest_1401 - Isopenicillin N synthase and related dioxygenases, at 1,508,541 to 1,509,521
_1401
Psest_1402: Psest_1402 - Putative threonine efflux protein, at 1,509,824 to 1,510,432
_1402
Psest_1403: Psest_1403 - Transcriptional regulators, at 1,510,533 to 1,510,985
_1403
Psest_1404: Psest_1404 - Methyltransferase domain., at 1,511,192 to 1,511,812
_1404
Position (kb)
1509
1510
1511 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1509.184 kb on + strand, within Psest_1401 at 1509.184 kb on + strand, within Psest_1401 at 1509.184 kb on + strand, within Psest_1401 at 1509.184 kb on + strand, within Psest_1401 at 1509.185 kb on - strand, within Psest_1401 at 1509.185 kb on - strand, within Psest_1401 at 1509.185 kb on - strand, within Psest_1401 at 1509.185 kb on - strand, within Psest_1401 at 1509.185 kb on - strand, within Psest_1401 at 1509.185 kb on - strand, within Psest_1401 at 1509.185 kb on - strand, within Psest_1401 at 1509.185 kb on - strand, within Psest_1401 at 1509.185 kb on - strand, within Psest_1401 at 1509.185 kb on - strand, within Psest_1401 at 1509.247 kb on + strand, within Psest_1401 at 1509.569 kb on + strand at 1509.569 kb on + strand at 1509.569 kb on + strand at 1509.642 kb on - strand at 1509.642 kb on - strand at 1509.734 kb on + strand at 1509.735 kb on - strand at 1509.735 kb on - strand at 1510.004 kb on + strand, within Psest_1402 at 1510.004 kb on + strand, within Psest_1402 at 1510.004 kb on + strand, within Psest_1402 at 1510.004 kb on + strand, within Psest_1402 at 1510.005 kb on - strand, within Psest_1402 at 1510.005 kb on - strand, within Psest_1402 at 1510.005 kb on - strand, within Psest_1402 at 1510.005 kb on - strand, within Psest_1402 at 1510.035 kb on + strand, within Psest_1402 at 1510.035 kb on + strand, within Psest_1402 at 1510.035 kb on + strand, within Psest_1402 at 1510.035 kb on + strand, within Psest_1402 at 1510.035 kb on + strand, within Psest_1402 at 1510.036 kb on - strand, within Psest_1402 at 1510.036 kb on - strand, within Psest_1402 at 1510.036 kb on - strand, within Psest_1402 at 1510.036 kb on - strand, within Psest_1402 at 1510.036 kb on - strand, within Psest_1402 at 1510.036 kb on - strand, within Psest_1402 at 1510.036 kb on - strand, within Psest_1402 at 1510.103 kb on + strand, within Psest_1402 at 1510.103 kb on + strand, within Psest_1402 at 1510.103 kb on + strand, within Psest_1402 at 1510.103 kb on + strand, within Psest_1402 at 1510.103 kb on + strand, within Psest_1402 at 1510.104 kb on - strand, within Psest_1402 at 1510.104 kb on - strand, within Psest_1402 at 1510.104 kb on - strand, within Psest_1402 at 1510.104 kb on - strand, within Psest_1402 at 1510.130 kb on + strand, within Psest_1402 at 1510.131 kb on - strand, within Psest_1402 at 1510.131 kb on - strand, within Psest_1402 at 1510.131 kb on - strand, within Psest_1402 at 1510.183 kb on + strand, within Psest_1402 at 1510.184 kb on - strand, within Psest_1402 at 1510.184 kb on - strand, within Psest_1402 at 1510.184 kb on - strand, within Psest_1402 at 1510.185 kb on + strand, within Psest_1402 at 1510.185 kb on + strand, within Psest_1402 at 1510.185 kb on + strand, within Psest_1402 at 1510.186 kb on - strand, within Psest_1402 at 1510.436 kb on + strand at 1510.436 kb on + strand at 1510.436 kb on + strand at 1510.436 kb on + strand at 1510.436 kb on + strand at 1510.437 kb on - strand at 1510.437 kb on - strand at 1510.437 kb on - strand at 1510.437 kb on - strand at 1510.437 kb on - strand at 1510.628 kb on - strand, within Psest_1403 at 1510.679 kb on + strand, within Psest_1403 at 1510.737 kb on + strand, within Psest_1403 at 1510.737 kb on + strand, within Psest_1403 at 1510.737 kb on + strand, within Psest_1403 at 1510.737 kb on + strand, within Psest_1403 at 1510.738 kb on - strand, within Psest_1403 at 1510.738 kb on - strand, within Psest_1403 at 1510.738 kb on - strand, within Psest_1403 at 1510.738 kb on - strand, within Psest_1403 at 1510.738 kb on - strand, within Psest_1403 at 1510.738 kb on - strand, within Psest_1403 at 1510.851 kb on + strand, within Psest_1403 at 1510.851 kb on + strand, within Psest_1403 at 1510.852 kb on - strand, within Psest_1403 at 1510.877 kb on + strand, within Psest_1403 at 1510.877 kb on + strand, within Psest_1403 at 1510.877 kb on + strand, within Psest_1403 at 1510.887 kb on + strand, within Psest_1403 at 1510.887 kb on + strand, within Psest_1403 at 1510.887 kb on + strand, within Psest_1403 at 1510.887 kb on + strand, within Psest_1403 at 1510.887 kb on + strand, within Psest_1403 at 1510.887 kb on + strand, within Psest_1403 at 1510.888 kb on - strand, within Psest_1403 at 1510.888 kb on - strand, within Psest_1403 at 1510.888 kb on - strand, within Psest_1403 at 1510.947 kb on + strand at 1510.947 kb on + strand at 1510.947 kb on + strand at 1510.947 kb on + strand at 1510.947 kb on + strand at 1510.947 kb on + strand at 1510.947 kb on + strand at 1510.948 kb on - strand at 1510.948 kb on - strand at 1510.948 kb on - strand at 1510.948 kb on - strand at 1510.948 kb on - strand at 1510.948 kb on - strand at 1510.948 kb on - strand at 1510.948 kb on - strand at 1510.948 kb on - strand at 1511.013 kb on + strand at 1511.023 kb on + strand at 1511.024 kb on - strand at 1511.024 kb on - strand at 1511.024 kb on - strand at 1511.024 kb on - strand at 1511.099 kb on + strand at 1511.099 kb on + strand at 1511.117 kb on + strand at 1511.135 kb on + strand at 1511.136 kb on - strand at 1511.136 kb on - strand at 1511.136 kb on - strand at 1511.193 kb on + strand at 1511.430 kb on + strand, within Psest_1404 at 1511.430 kb on + strand, within Psest_1404 at 1511.430 kb on + strand, within Psest_1404 at 1511.430 kb on + strand, within Psest_1404 at 1511.430 kb on + strand, within Psest_1404 at 1511.430 kb on + strand, within Psest_1404 at 1511.430 kb on + strand, within Psest_1404 at 1511.430 kb on + strand, within Psest_1404 at 1511.430 kb on + strand, within Psest_1404 at 1511.430 kb on + strand, within Psest_1404 at 1511.430 kb on + strand, within Psest_1404 at 1511.430 kb on + strand, within Psest_1404 at 1511.430 kb on + strand, within Psest_1404 at 1511.430 kb on + strand, within Psest_1404 at 1511.430 kb on + strand, within Psest_1404 at 1511.431 kb on - strand, within Psest_1404 at 1511.431 kb on - strand, within Psest_1404 at 1511.431 kb on - strand, within Psest_1404 at 1511.431 kb on - strand, within Psest_1404 at 1511.431 kb on - strand, within Psest_1404 at 1511.431 kb on - strand, within Psest_1404
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 1,509,184 + Psest_1401 0.66 -1.4 1,509,184 + Psest_1401 0.66 -0.3 1,509,184 + Psest_1401 0.66 -0.8 1,509,184 + Psest_1401 0.66 -0.7 1,509,185 - Psest_1401 0.66 -0.8 1,509,185 - Psest_1401 0.66 +0.0 1,509,185 - Psest_1401 0.66 -1.4 1,509,185 - Psest_1401 0.66 +0.0 1,509,185 - Psest_1401 0.66 -0.2 1,509,185 - Psest_1401 0.66 -0.4 1,509,185 - Psest_1401 0.66 -0.5 1,509,185 - Psest_1401 0.66 -0.3 1,509,185 - Psest_1401 0.66 -1.4 1,509,185 - Psest_1401 0.66 -0.5 1,509,247 + Psest_1401 0.72 -2.3 1,509,569 + -2.2 1,509,569 + -0.8 1,509,569 + -1.0 1,509,642 - -0.7 1,509,642 - -0.8 1,509,734 + -2.5 1,509,735 - +2.2 1,509,735 - -1.6 1,510,004 + Psest_1402 0.30 -1.4 1,510,004 + Psest_1402 0.30 +0.8 1,510,004 + Psest_1402 0.30 -0.8 1,510,004 + Psest_1402 0.30 -0.7 1,510,005 - Psest_1402 0.30 +0.0 1,510,005 - Psest_1402 0.30 -0.4 1,510,005 - Psest_1402 0.30 +0.9 1,510,005 - Psest_1402 0.30 -0.7 1,510,035 + Psest_1402 0.35 -0.0 1,510,035 + Psest_1402 0.35 -0.8 1,510,035 + Psest_1402 0.35 -1.3 1,510,035 + Psest_1402 0.35 -1.8 1,510,035 + Psest_1402 0.35 -0.8 1,510,036 - Psest_1402 0.35 +1.2 1,510,036 - Psest_1402 0.35 -0.2 1,510,036 - Psest_1402 0.35 +1.0 1,510,036 - Psest_1402 0.35 -1.1 1,510,036 - Psest_1402 0.35 -2.9 1,510,036 - Psest_1402 0.35 +0.2 1,510,036 - Psest_1402 0.35 -0.6 1,510,103 + Psest_1402 0.46 -2.0 1,510,103 + Psest_1402 0.46 -0.9 1,510,103 + Psest_1402 0.46 -1.6 1,510,103 + Psest_1402 0.46 -1.8 1,510,103 + Psest_1402 0.46 -1.6 1,510,104 - Psest_1402 0.46 +0.0 1,510,104 - Psest_1402 0.46 -1.5 1,510,104 - Psest_1402 0.46 -2.2 1,510,104 - Psest_1402 0.46 -1.7 1,510,130 + Psest_1402 0.50 -0.6 1,510,131 - Psest_1402 0.50 -0.1 1,510,131 - Psest_1402 0.50 -3.0 1,510,131 - Psest_1402 0.50 -0.9 1,510,183 + Psest_1402 0.59 -2.8 1,510,184 - Psest_1402 0.59 +0.8 1,510,184 - Psest_1402 0.59 -0.4 1,510,184 - Psest_1402 0.59 -2.2 1,510,185 + Psest_1402 0.59 -1.4 1,510,185 + Psest_1402 0.59 -2.4 1,510,185 + Psest_1402 0.59 -0.7 1,510,186 - Psest_1402 0.59 -1.6 1,510,436 + -0.3 1,510,436 + -0.4 1,510,436 + -2.3 1,510,436 + -0.9 1,510,436 + -0.8 1,510,437 - -0.6 1,510,437 - -2.3 1,510,437 - -3.6 1,510,437 - +0.4 1,510,437 - -0.2 1,510,628 - Psest_1403 0.21 -1.7 1,510,679 + Psest_1403 0.32 +2.1 1,510,737 + Psest_1403 0.45 -0.7 1,510,737 + Psest_1403 0.45 -0.8 1,510,737 + Psest_1403 0.45 -0.1 1,510,737 + Psest_1403 0.45 -1.0 1,510,738 - Psest_1403 0.45 +0.2 1,510,738 - Psest_1403 0.45 +0.8 1,510,738 - Psest_1403 0.45 +0.2 1,510,738 - Psest_1403 0.45 -3.0 1,510,738 - Psest_1403 0.45 -0.8 1,510,738 - Psest_1403 0.45 -2.7 1,510,851 + Psest_1403 0.70 -0.8 1,510,851 + Psest_1403 0.70 -0.8 1,510,852 - Psest_1403 0.70 +0.8 1,510,877 + Psest_1403 0.76 -0.6 1,510,877 + Psest_1403 0.76 +1.1 1,510,877 + Psest_1403 0.76 +0.2 1,510,887 + Psest_1403 0.78 +0.2 1,510,887 + Psest_1403 0.78 -2.0 1,510,887 + Psest_1403 0.78 -2.0 1,510,887 + Psest_1403 0.78 +0.9 1,510,887 + Psest_1403 0.78 -0.4 1,510,887 + Psest_1403 0.78 -0.4 1,510,888 - Psest_1403 0.78 -1.2 1,510,888 - Psest_1403 0.78 -1.8 1,510,888 - Psest_1403 0.78 -1.1 1,510,947 + +0.9 1,510,947 + -1.6 1,510,947 + +0.8 1,510,947 + -0.8 1,510,947 + -1.0 1,510,947 + -1.1 1,510,947 + -0.8 1,510,948 - -2.1 1,510,948 - -0.8 1,510,948 - -1.5 1,510,948 - -0.4 1,510,948 - -1.4 1,510,948 - -1.1 1,510,948 - -2.7 1,510,948 - -1.3 1,510,948 - -3.0 1,511,013 + +0.0 1,511,023 + -0.6 1,511,024 - -2.9 1,511,024 - -1.4 1,511,024 - -2.0 1,511,024 - -1.1 1,511,099 + +0.7 1,511,099 + -0.8 1,511,117 + -0.7 1,511,135 + -0.7 1,511,136 - +1.8 1,511,136 - -1.9 1,511,136 - -1.1 1,511,193 + -0.5 1,511,430 + Psest_1404 0.38 +0.7 1,511,430 + Psest_1404 0.38 -0.1 1,511,430 + Psest_1404 0.38 -0.1 1,511,430 + Psest_1404 0.38 +0.5 1,511,430 + Psest_1404 0.38 +0.6 1,511,430 + Psest_1404 0.38 -1.1 1,511,430 + Psest_1404 0.38 +1.4 1,511,430 + Psest_1404 0.38 +0.6 1,511,430 + Psest_1404 0.38 -0.3 1,511,430 + Psest_1404 0.38 -1.2 1,511,430 + Psest_1404 0.38 +0.1 1,511,430 + Psest_1404 0.38 +0.2 1,511,430 + Psest_1404 0.38 +0.8 1,511,430 + Psest_1404 0.38 +0.6 1,511,430 + Psest_1404 0.38 -0.4 1,511,431 - Psest_1404 0.38 -0.5 1,511,431 - Psest_1404 0.38 +1.2 1,511,431 - Psest_1404 0.38 -1.4 1,511,431 - Psest_1404 0.38 -1.7 1,511,431 - Psest_1404 0.38 +0.4 1,511,431 - Psest_1404 0.38 -0.6
Or see this region's nucleotide sequence