Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1342

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1340 and Psest_1341 are separated by 37 nucleotidesPsest_1341 and Psest_1342 are separated by 60 nucleotidesPsest_1342 and Psest_1343 are separated by 16 nucleotides Psest_1340: Psest_1340 - rarD protein, at 1,450,691 to 1,451,620 _1340 Psest_1341: Psest_1341 - FOG: FHA domain, at 1,451,658 to 1,452,512 _1341 Psest_1342: Psest_1342 - Protein kinase domain., at 1,452,573 to 1,454,126 _1342 Psest_1343: Psest_1343 - Serine/threonine protein phosphatase, at 1,454,143 to 1,454,919 _1343 Position (kb) 1452 1453 1454 1455Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1451.952 kb on + strand, within Psest_1341at 1451.952 kb on + strand, within Psest_1341at 1451.952 kb on + strand, within Psest_1341at 1451.952 kb on + strand, within Psest_1341at 1451.953 kb on - strand, within Psest_1341at 1451.953 kb on - strand, within Psest_1341at 1452.058 kb on + strand, within Psest_1341at 1452.059 kb on - strand, within Psest_1341at 1452.059 kb on - strand, within Psest_1341at 1452.059 kb on - strand, within Psest_1341at 1452.059 kb on - strand, within Psest_1341at 1452.059 kb on - strand, within Psest_1341at 1452.059 kb on - strand, within Psest_1341at 1452.059 kb on - strand, within Psest_1341at 1452.059 kb on - strand, within Psest_1341at 1452.151 kb on + strand, within Psest_1341at 1452.151 kb on + strand, within Psest_1341at 1452.151 kb on + strand, within Psest_1341at 1452.152 kb on - strand, within Psest_1341at 1452.152 kb on - strand, within Psest_1341at 1452.322 kb on + strand, within Psest_1341at 1452.322 kb on + strand, within Psest_1341at 1452.323 kb on - strand, within Psest_1341at 1452.323 kb on - strand, within Psest_1341at 1452.323 kb on - strand, within Psest_1341at 1452.323 kb on - strand, within Psest_1341at 1452.323 kb on - strand, within Psest_1341at 1452.355 kb on + strand, within Psest_1341at 1452.356 kb on - strand, within Psest_1341at 1452.356 kb on - strand, within Psest_1341at 1452.358 kb on + strand, within Psest_1341at 1452.359 kb on - strand, within Psest_1341at 1452.359 kb on - strand, within Psest_1341at 1452.521 kb on + strandat 1452.748 kb on + strand, within Psest_1342at 1452.781 kb on + strand, within Psest_1342at 1452.781 kb on + strand, within Psest_1342at 1452.781 kb on + strand, within Psest_1342at 1452.781 kb on + strand, within Psest_1342at 1452.781 kb on + strand, within Psest_1342at 1452.782 kb on - strand, within Psest_1342at 1452.782 kb on - strand, within Psest_1342at 1452.782 kb on - strand, within Psest_1342at 1452.782 kb on - strand, within Psest_1342at 1452.814 kb on + strand, within Psest_1342at 1452.815 kb on - strand, within Psest_1342at 1452.838 kb on + strand, within Psest_1342at 1452.838 kb on + strand, within Psest_1342at 1452.910 kb on + strand, within Psest_1342at 1452.914 kb on - strand, within Psest_1342at 1452.914 kb on - strand, within Psest_1342at 1452.914 kb on - strand, within Psest_1342at 1452.914 kb on - strand, within Psest_1342at 1452.914 kb on - strand, within Psest_1342at 1452.914 kb on - strand, within Psest_1342at 1453.072 kb on + strand, within Psest_1342at 1453.072 kb on + strand, within Psest_1342at 1453.072 kb on + strand, within Psest_1342at 1453.073 kb on - strand, within Psest_1342at 1453.073 kb on - strand, within Psest_1342at 1453.091 kb on - strand, within Psest_1342at 1453.162 kb on + strand, within Psest_1342at 1453.163 kb on - strand, within Psest_1342at 1453.178 kb on - strand, within Psest_1342at 1453.178 kb on - strand, within Psest_1342at 1453.423 kb on + strand, within Psest_1342at 1453.552 kb on + strand, within Psest_1342at 1453.552 kb on + strand, within Psest_1342at 1453.552 kb on + strand, within Psest_1342at 1453.552 kb on + strand, within Psest_1342at 1453.552 kb on + strand, within Psest_1342at 1453.552 kb on + strand, within Psest_1342at 1453.552 kb on + strand, within Psest_1342at 1453.553 kb on - strand, within Psest_1342at 1453.553 kb on - strand, within Psest_1342at 1453.553 kb on - strand, within Psest_1342at 1453.606 kb on + strand, within Psest_1342at 1453.861 kb on + strand, within Psest_1342at 1453.861 kb on + strand, within Psest_1342at 1453.861 kb on + strand, within Psest_1342at 1453.861 kb on + strand, within Psest_1342at 1453.861 kb on + strand, within Psest_1342at 1453.861 kb on + strand, within Psest_1342at 1453.861 kb on + strand, within Psest_1342at 1453.862 kb on - strand, within Psest_1342at 1453.862 kb on - strand, within Psest_1342at 1453.877 kb on - strand, within Psest_1342at 1454.004 kb on + strandat 1454.004 kb on + strandat 1454.005 kb on - strandat 1454.017 kb on - strandat 1454.126 kb on + strandat 1454.847 kb on + strandat 1454.847 kb on + strandat 1454.885 kb on + strandat 1455.034 kb on + strandat 1455.034 kb on + strandat 1455.049 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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1,451,952 + Psest_1341 0.34 -1.1
1,451,952 + Psest_1341 0.34 -0.8
1,451,952 + Psest_1341 0.34 +0.5
1,451,952 + Psest_1341 0.34 +0.2
1,451,953 - Psest_1341 0.35 +0.5
1,451,953 - Psest_1341 0.35 -0.1
1,452,058 + Psest_1341 0.47 +0.7
1,452,059 - Psest_1341 0.47 -1.1
1,452,059 - Psest_1341 0.47 +0.2
1,452,059 - Psest_1341 0.47 -0.5
1,452,059 - Psest_1341 0.47 -0.1
1,452,059 - Psest_1341 0.47 -0.2
1,452,059 - Psest_1341 0.47 -1.0
1,452,059 - Psest_1341 0.47 -0.3
1,452,059 - Psest_1341 0.47 -2.2
1,452,151 + Psest_1341 0.58 -0.2
1,452,151 + Psest_1341 0.58 +1.8
1,452,151 + Psest_1341 0.58 -0.7
1,452,152 - Psest_1341 0.58 -1.5
1,452,152 - Psest_1341 0.58 -0.6
1,452,322 + Psest_1341 0.78 +0.2
1,452,322 + Psest_1341 0.78 -0.9
1,452,323 - Psest_1341 0.78 -2.2
1,452,323 - Psest_1341 0.78 +1.9
1,452,323 - Psest_1341 0.78 +0.2
1,452,323 - Psest_1341 0.78 +0.2
1,452,323 - Psest_1341 0.78 +0.1
1,452,355 + Psest_1341 0.82 +0.7
1,452,356 - Psest_1341 0.82 +1.5
1,452,356 - Psest_1341 0.82 +0.8
1,452,358 + Psest_1341 0.82 +0.2
1,452,359 - Psest_1341 0.82 +0.2
1,452,359 - Psest_1341 0.82 -1.1
1,452,521 + -0.1
1,452,748 + Psest_1342 0.11 -0.2
1,452,781 + Psest_1342 0.13 -1.3
1,452,781 + Psest_1342 0.13 +0.5
1,452,781 + Psest_1342 0.13 -0.5
1,452,781 + Psest_1342 0.13 -1.8
1,452,781 + Psest_1342 0.13 -0.1
1,452,782 - Psest_1342 0.13 +1.1
1,452,782 - Psest_1342 0.13 +0.8
1,452,782 - Psest_1342 0.13 -0.1
1,452,782 - Psest_1342 0.13 -1.3
1,452,814 + Psest_1342 0.16 -0.7
1,452,815 - Psest_1342 0.16 -1.8
1,452,838 + Psest_1342 0.17 +1.2
1,452,838 + Psest_1342 0.17 -1.3
1,452,910 + Psest_1342 0.22 +0.6
1,452,914 - Psest_1342 0.22 -0.3
1,452,914 - Psest_1342 0.22 -0.3
1,452,914 - Psest_1342 0.22 -1.3
1,452,914 - Psest_1342 0.22 -1.9
1,452,914 - Psest_1342 0.22 -1.7
1,452,914 - Psest_1342 0.22 +1.2
1,453,072 + Psest_1342 0.32 +0.8
1,453,072 + Psest_1342 0.32 +0.3
1,453,072 + Psest_1342 0.32 +0.7
1,453,073 - Psest_1342 0.32 +0.6
1,453,073 - Psest_1342 0.32 +0.2
1,453,091 - Psest_1342 0.33 -1.1
1,453,162 + Psest_1342 0.38 -1.3
1,453,163 - Psest_1342 0.38 +1.7
1,453,178 - Psest_1342 0.39 -1.3
1,453,178 - Psest_1342 0.39 +0.7
1,453,423 + Psest_1342 0.55 +0.7
1,453,552 + Psest_1342 0.63 -0.3
1,453,552 + Psest_1342 0.63 +0.5
1,453,552 + Psest_1342 0.63 +0.2
1,453,552 + Psest_1342 0.63 +0.8
1,453,552 + Psest_1342 0.63 +1.2
1,453,552 + Psest_1342 0.63 -1.3
1,453,552 + Psest_1342 0.63 -0.6
1,453,553 - Psest_1342 0.63 -3.2
1,453,553 - Psest_1342 0.63 -0.2
1,453,553 - Psest_1342 0.63 -1.9
1,453,606 + Psest_1342 0.66 +0.7
1,453,861 + Psest_1342 0.83 +0.4
1,453,861 + Psest_1342 0.83 +1.3
1,453,861 + Psest_1342 0.83 +1.2
1,453,861 + Psest_1342 0.83 +0.5
1,453,861 + Psest_1342 0.83 +1.0
1,453,861 + Psest_1342 0.83 +0.4
1,453,861 + Psest_1342 0.83 +0.4
1,453,862 - Psest_1342 0.83 -1.3
1,453,862 - Psest_1342 0.83 -0.7
1,453,877 - Psest_1342 0.84 -0.3
1,454,004 + -0.6
1,454,004 + +0.5
1,454,005 - -0.2
1,454,017 - -0.3
1,454,126 + +0.7
1,454,847 + -0.3
1,454,847 + +0.8
1,454,885 + +0.4
1,455,034 + -0.2
1,455,034 + -0.6
1,455,049 - -1.2

Or see this region's nucleotide sequence