Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1335 and Psest_1336 are separated by 172 nucleotides Psest_1336 and Psest_1337 are separated by 106 nucleotides
Psest_1335: Psest_1335 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) (from data) , at 1,439,194 to 1,440,885
_1335
Psest_1336: Psest_1336 - Methyl-accepting chemotaxis protein, at 1,441,058 to 1,442,743
_1336
Psest_1337: Psest_1337 - Methyl-accepting chemotaxis protein, at 1,442,850 to 1,444,604
_1337
Position (kb)
1441
1442
1443 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1440.088 kb on + strand, within Psest_1335 at 1440.088 kb on + strand, within Psest_1335 at 1440.089 kb on - strand, within Psest_1335 at 1440.351 kb on + strand, within Psest_1335 at 1440.352 kb on - strand, within Psest_1335 at 1440.352 kb on - strand, within Psest_1335 at 1440.476 kb on + strand, within Psest_1335 at 1440.477 kb on - strand, within Psest_1335 at 1440.535 kb on + strand, within Psest_1335 at 1440.535 kb on + strand, within Psest_1335 at 1440.535 kb on + strand, within Psest_1335 at 1440.592 kb on + strand, within Psest_1335 at 1440.877 kb on - strand at 1440.877 kb on - strand at 1440.883 kb on + strand at 1440.883 kb on + strand at 1440.883 kb on + strand at 1440.883 kb on + strand at 1440.883 kb on + strand at 1440.883 kb on + strand at 1440.883 kb on + strand at 1440.883 kb on + strand at 1440.884 kb on - strand at 1440.884 kb on - strand at 1440.884 kb on - strand at 1440.884 kb on - strand at 1440.884 kb on - strand at 1440.928 kb on + strand at 1440.928 kb on + strand at 1440.928 kb on + strand at 1440.928 kb on + strand at 1440.928 kb on + strand at 1440.929 kb on - strand at 1440.929 kb on - strand at 1440.932 kb on + strand at 1440.933 kb on - strand at 1440.971 kb on + strand at 1440.972 kb on - strand at 1441.004 kb on + strand at 1441.053 kb on - strand at 1441.152 kb on + strand at 1441.152 kb on + strand at 1441.152 kb on + strand at 1441.153 kb on - strand at 1441.153 kb on - strand at 1441.153 kb on - strand at 1441.153 kb on - strand at 1441.153 kb on - strand at 1441.158 kb on + strand at 1441.158 kb on + strand at 1441.158 kb on + strand at 1441.159 kb on - strand at 1441.159 kb on - strand at 1441.159 kb on - strand at 1441.235 kb on + strand, within Psest_1336 at 1441.236 kb on - strand, within Psest_1336 at 1441.236 kb on - strand, within Psest_1336 at 1441.271 kb on + strand, within Psest_1336 at 1441.271 kb on + strand, within Psest_1336 at 1441.271 kb on + strand, within Psest_1336 at 1441.271 kb on + strand, within Psest_1336 at 1441.271 kb on + strand, within Psest_1336 at 1441.271 kb on + strand, within Psest_1336 at 1441.271 kb on + strand, within Psest_1336 at 1441.271 kb on + strand, within Psest_1336 at 1441.271 kb on + strand, within Psest_1336 at 1441.272 kb on - strand, within Psest_1336 at 1441.272 kb on - strand, within Psest_1336 at 1441.272 kb on - strand, within Psest_1336 at 1441.272 kb on - strand, within Psest_1336 at 1441.272 kb on - strand, within Psest_1336 at 1441.272 kb on - strand, within Psest_1336 at 1441.272 kb on - strand, within Psest_1336 at 1441.340 kb on + strand, within Psest_1336 at 1441.341 kb on - strand, within Psest_1336 at 1441.502 kb on + strand, within Psest_1336 at 1441.511 kb on + strand, within Psest_1336 at 1441.568 kb on + strand, within Psest_1336 at 1441.569 kb on - strand, within Psest_1336 at 1441.569 kb on - strand, within Psest_1336 at 1441.569 kb on - strand, within Psest_1336 at 1441.851 kb on + strand, within Psest_1336 at 1442.754 kb on - strand at 1442.841 kb on - strand at 1442.841 kb on - strand at 1442.859 kb on - strand at 1442.899 kb on + strand at 1442.899 kb on + strand at 1442.899 kb on + strand at 1442.899 kb on + strand at 1442.899 kb on + strand at 1442.900 kb on - strand at 1442.918 kb on + strand at 1442.918 kb on + strand at 1442.918 kb on + strand at 1442.918 kb on + strand at 1442.918 kb on + strand at 1442.919 kb on - strand at 1442.919 kb on - strand at 1442.919 kb on - strand at 1442.919 kb on - strand at 1442.919 kb on - strand at 1442.919 kb on - strand at 1442.919 kb on - strand at 1442.919 kb on - strand at 1442.938 kb on + strand at 1443.012 kb on + strand at 1443.012 kb on + strand at 1443.012 kb on + strand at 1443.013 kb on - strand at 1443.013 kb on - strand at 1443.013 kb on - strand at 1443.013 kb on - strand at 1443.096 kb on + strand, within Psest_1337 at 1443.096 kb on + strand, within Psest_1337 at 1443.096 kb on + strand, within Psest_1337 at 1443.097 kb on - strand, within Psest_1337 at 1443.132 kb on + strand, within Psest_1337 at 1443.201 kb on + strand, within Psest_1337 at 1443.291 kb on + strand, within Psest_1337 at 1443.291 kb on + strand, within Psest_1337 at 1443.292 kb on - strand, within Psest_1337 at 1443.458 kb on + strand, within Psest_1337
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 1,440,088 + Psest_1335 0.53 +0.6 1,440,088 + Psest_1335 0.53 +1.4 1,440,089 - Psest_1335 0.53 +1.7 1,440,351 + Psest_1335 0.68 +2.5 1,440,352 - Psest_1335 0.68 +1.2 1,440,352 - Psest_1335 0.68 +1.3 1,440,476 + Psest_1335 0.76 +1.5 1,440,477 - Psest_1335 0.76 +1.8 1,440,535 + Psest_1335 0.79 +2.3 1,440,535 + Psest_1335 0.79 +1.8 1,440,535 + Psest_1335 0.79 +1.3 1,440,592 + Psest_1335 0.83 +1.4 1,440,877 - -2.2 1,440,877 - -1.1 1,440,883 + +2.0 1,440,883 + +1.9 1,440,883 + +1.6 1,440,883 + +1.5 1,440,883 + +0.8 1,440,883 + +1.8 1,440,883 + +2.5 1,440,883 + +1.0 1,440,884 - -0.9 1,440,884 - -1.3 1,440,884 - +0.2 1,440,884 - -2.6 1,440,884 - -0.6 1,440,928 + +0.0 1,440,928 + -0.2 1,440,928 + -0.2 1,440,928 + -0.8 1,440,928 + +0.0 1,440,929 - +1.0 1,440,929 - +1.1 1,440,932 + +0.3 1,440,933 - +0.8 1,440,971 + -0.8 1,440,972 - +1.8 1,441,004 + -0.9 1,441,053 - -0.3 1,441,152 + -0.3 1,441,152 + +0.2 1,441,152 + -0.3 1,441,153 - -0.1 1,441,153 - +0.3 1,441,153 - -0.9 1,441,153 - -1.8 1,441,153 - +1.2 1,441,158 + +1.2 1,441,158 + +0.1 1,441,158 + +0.3 1,441,159 - +1.2 1,441,159 - +0.3 1,441,159 - +0.6 1,441,235 + Psest_1336 0.10 +0.7 1,441,236 - Psest_1336 0.11 +0.0 1,441,236 - Psest_1336 0.11 -1.3 1,441,271 + Psest_1336 0.13 +0.2 1,441,271 + Psest_1336 0.13 -0.0 1,441,271 + Psest_1336 0.13 -0.3 1,441,271 + Psest_1336 0.13 +0.2 1,441,271 + Psest_1336 0.13 -2.1 1,441,271 + Psest_1336 0.13 -0.5 1,441,271 + Psest_1336 0.13 +0.0 1,441,271 + Psest_1336 0.13 -0.3 1,441,271 + Psest_1336 0.13 -1.6 1,441,272 - Psest_1336 0.13 -1.0 1,441,272 - Psest_1336 0.13 -0.2 1,441,272 - Psest_1336 0.13 +0.2 1,441,272 - Psest_1336 0.13 +1.0 1,441,272 - Psest_1336 0.13 +1.2 1,441,272 - Psest_1336 0.13 -0.8 1,441,272 - Psest_1336 0.13 +0.2 1,441,340 + Psest_1336 0.17 -1.3 1,441,341 - Psest_1336 0.17 +0.2 1,441,502 + Psest_1336 0.26 +1.9 1,441,511 + Psest_1336 0.27 -0.3 1,441,568 + Psest_1336 0.30 +0.5 1,441,569 - Psest_1336 0.30 +0.0 1,441,569 - Psest_1336 0.30 -2.0 1,441,569 - Psest_1336 0.30 +0.4 1,441,851 + Psest_1336 0.47 -1.1 1,442,754 - +0.4 1,442,841 - +1.3 1,442,841 - +1.8 1,442,859 - +1.1 1,442,899 + -1.6 1,442,899 + -1.6 1,442,899 + -0.1 1,442,899 + -1.5 1,442,899 + -0.2 1,442,900 - +2.5 1,442,918 + +2.2 1,442,918 + -1.1 1,442,918 + +0.6 1,442,918 + +1.4 1,442,918 + +1.0 1,442,919 - +1.2 1,442,919 - -0.1 1,442,919 - +1.2 1,442,919 - +0.7 1,442,919 - +0.6 1,442,919 - +0.8 1,442,919 - -1.6 1,442,919 - +0.9 1,442,938 + -0.4 1,443,012 + +1.0 1,443,012 + -0.5 1,443,012 + +0.2 1,443,013 - -0.2 1,443,013 - +0.6 1,443,013 - +0.2 1,443,013 - +1.5 1,443,096 + Psest_1337 0.14 -0.0 1,443,096 + Psest_1337 0.14 -0.5 1,443,096 + Psest_1337 0.14 -0.1 1,443,097 - Psest_1337 0.14 +0.7 1,443,132 + Psest_1337 0.16 -0.6 1,443,201 + Psest_1337 0.20 +0.7 1,443,291 + Psest_1337 0.25 -0.1 1,443,291 + Psest_1337 0.25 +0.6 1,443,292 - Psest_1337 0.25 +0.2 1,443,458 + Psest_1337 0.35 -0.9
Or see this region's nucleotide sequence