Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1321 and Psest_1322 are separated by 278 nucleotides Psest_1322 and Psest_1323 overlap by 4 nucleotides Psest_1323 and Psest_1324 are separated by 121 nucleotides
Psest_1321: Psest_1321 - undecaprenyl-diphosphatase UppP, at 1,421,885 to 1,422,697
_1321
Psest_1322: Psest_1322 - 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases, at 1,422,976 to 1,423,863
_1322
Psest_1323: Psest_1323 - Hydroxypyruvate isomerase, at 1,423,860 to 1,424,642
_1323
Psest_1324: Psest_1324 - Arabinose efflux permease, at 1,424,764 to 1,426,110
_1324
Position (kb)
1422
1423
1424 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1422.557 kb on + strand, within Psest_1321 at 1423.127 kb on + strand, within Psest_1322 at 1423.359 kb on + strand, within Psest_1322 at 1423.467 kb on + strand, within Psest_1322 at 1423.843 kb on + strand at 1423.843 kb on + strand at 1423.843 kb on + strand at 1423.843 kb on + strand at 1423.844 kb on - strand at 1423.844 kb on - strand at 1423.844 kb on - strand at 1423.844 kb on - strand at 1424.116 kb on + strand, within Psest_1323 at 1424.133 kb on + strand, within Psest_1323 at 1424.133 kb on + strand, within Psest_1323 at 1424.133 kb on + strand, within Psest_1323 at 1424.133 kb on + strand, within Psest_1323 at 1424.133 kb on + strand, within Psest_1323 at 1424.133 kb on + strand, within Psest_1323 at 1424.134 kb on - strand, within Psest_1323 at 1424.134 kb on - strand, within Psest_1323 at 1424.395 kb on - strand, within Psest_1323 at 1424.400 kb on - strand, within Psest_1323 at 1424.578 kb on - strand at 1424.699 kb on + strand at 1424.699 kb on + strand at 1424.699 kb on + strand at 1424.699 kb on + strand at 1424.700 kb on - strand at 1424.700 kb on - strand at 1424.739 kb on + strand at 1424.739 kb on + strand at 1424.739 kb on + strand at 1424.739 kb on + strand at 1424.740 kb on - strand at 1424.740 kb on - strand at 1424.740 kb on - strand at 1424.740 kb on - strand at 1424.741 kb on + strand at 1424.741 kb on + strand at 1424.741 kb on + strand at 1424.741 kb on + strand at 1424.741 kb on + strand at 1424.741 kb on + strand at 1424.742 kb on - strand at 1424.742 kb on - strand at 1424.742 kb on - strand at 1424.742 kb on - strand at 1424.742 kb on - strand at 1424.742 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 1,422,557 + Psest_1321 0.83 -0.8 1,423,127 + Psest_1322 0.17 +2.6 1,423,359 + Psest_1322 0.43 -1.3 1,423,467 + Psest_1322 0.55 +1.1 1,423,843 + +0.1 1,423,843 + -0.7 1,423,843 + -0.2 1,423,843 + -0.8 1,423,844 - +0.0 1,423,844 - +0.1 1,423,844 - -1.1 1,423,844 - -1.7 1,424,116 + Psest_1323 0.33 +1.3 1,424,133 + Psest_1323 0.35 -2.1 1,424,133 + Psest_1323 0.35 +1.7 1,424,133 + Psest_1323 0.35 +0.3 1,424,133 + Psest_1323 0.35 +0.6 1,424,133 + Psest_1323 0.35 +0.9 1,424,133 + Psest_1323 0.35 +0.0 1,424,134 - Psest_1323 0.35 -0.9 1,424,134 - Psest_1323 0.35 -0.9 1,424,395 - Psest_1323 0.68 -0.5 1,424,400 - Psest_1323 0.69 +0.5 1,424,578 - +1.0 1,424,699 + -0.2 1,424,699 + -0.9 1,424,699 + +0.2 1,424,699 + -1.2 1,424,700 - -0.3 1,424,700 - -0.5 1,424,739 + +0.1 1,424,739 + -1.0 1,424,739 + -0.7 1,424,739 + +0.8 1,424,740 - +0.7 1,424,740 - -0.7 1,424,740 - -1.1 1,424,740 - -0.6 1,424,741 + -0.2 1,424,741 + -0.3 1,424,741 + +0.5 1,424,741 + -1.2 1,424,741 + +1.8 1,424,741 + +1.3 1,424,742 - -0.3 1,424,742 - -1.0 1,424,742 - -0.7 1,424,742 - -1.2 1,424,742 - -0.8 1,424,742 - -1.2
Or see this region's nucleotide sequence