Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1262

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1261 and Psest_1262 are separated by 7 nucleotidesPsest_1262 and Psest_1263 are separated by 16 nucleotides Psest_1261: Psest_1261 - Uncharacterized protein conserved in bacteria, at 1,365,822 to 1,366,832 _1261 Psest_1262: Psest_1262 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, at 1,366,840 to 1,367,952 _1262 Psest_1263: Psest_1263 - histidyl-tRNA synthetase, at 1,367,969 to 1,369,258 _1263 Position (kb) 1366 1367 1368Strain fitness (log2 ratio) -2 -1 0 1 2at 1365.998 kb on + strand, within Psest_1261at 1365.998 kb on + strand, within Psest_1261at 1365.998 kb on + strand, within Psest_1261at 1365.998 kb on + strand, within Psest_1261at 1365.998 kb on + strand, within Psest_1261at 1365.998 kb on + strand, within Psest_1261at 1365.998 kb on + strand, within Psest_1261at 1365.998 kb on + strand, within Psest_1261at 1365.998 kb on + strand, within Psest_1261at 1365.998 kb on + strand, within Psest_1261at 1365.998 kb on + strand, within Psest_1261at 1365.998 kb on + strand, within Psest_1261at 1366.183 kb on + strand, within Psest_1261at 1366.726 kb on + strand, within Psest_1261at 1366.726 kb on + strand, within Psest_1261at 1366.726 kb on + strand, within Psest_1261at 1366.726 kb on + strand, within Psest_1261at 1366.726 kb on + strand, within Psest_1261at 1366.726 kb on + strand, within Psest_1261at 1366.726 kb on + strand, within Psest_1261at 1366.761 kb on + strandat 1366.761 kb on + strandat 1366.761 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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1,365,998 + Psest_1261 0.17 +1.3
1,365,998 + Psest_1261 0.17 -0.3
1,365,998 + Psest_1261 0.17 +0.3
1,365,998 + Psest_1261 0.17 -2.2
1,365,998 + Psest_1261 0.17 -1.7
1,365,998 + Psest_1261 0.17 -1.5
1,365,998 + Psest_1261 0.17 -2.4
1,365,998 + Psest_1261 0.17 -1.1
1,365,998 + Psest_1261 0.17 +0.3
1,365,998 + Psest_1261 0.17 +0.7
1,365,998 + Psest_1261 0.17 -0.3
1,365,998 + Psest_1261 0.17 -0.1
1,366,183 + Psest_1261 0.36 -0.3
1,366,726 + Psest_1261 0.89 +0.1
1,366,726 + Psest_1261 0.89 -0.6
1,366,726 + Psest_1261 0.89 -1.4
1,366,726 + Psest_1261 0.89 -0.5
1,366,726 + Psest_1261 0.89 -2.0
1,366,726 + Psest_1261 0.89 +0.2
1,366,726 + Psest_1261 0.89 -0.8
1,366,761 + +2.5
1,366,761 + +0.5
1,366,761 + +0.5

Or see this region's nucleotide sequence