Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1256

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1255 and Psest_1256 are separated by 5 nucleotidesPsest_1256 and Psest_1257 are separated by 12 nucleotidesPsest_1257 and Psest_1258 are separated by 165 nucleotidesPsest_1258 and Psest_1259 are separated by 19 nucleotides Psest_1255: Psest_1255 - Fe-S protein assembly chaperone HscA, at 1,360,871 to 1,362,733 _1255 Psest_1256: Psest_1256 - ferredoxin, 2Fe-2S type, ISC system, at 1,362,739 to 1,363,077 _1256 Psest_1257: Psest_1257 - FeS assembly protein IscX, at 1,363,090 to 1,363,290 _1257 Psest_1258: Psest_1258 - Nucleoside diphosphate kinase, at 1,363,456 to 1,363,887 _1258 Psest_1259: Psest_1259 - 23S rRNA m2A2503 methyltransferase, at 1,363,907 to 1,365,055 _1259 Position (kb) 1362 1363 1364Strain fitness (log2 ratio) -2 -1 0 1 2at 1362.559 kb on + strandat 1363.098 kb on + strandat 1363.098 kb on + strandat 1363.098 kb on + strandat 1363.098 kb on + strandat 1363.098 kb on + strandat 1363.098 kb on + strandat 1363.098 kb on + strandat 1363.098 kb on + strandat 1363.099 kb on - strandat 1363.099 kb on - strandat 1363.099 kb on - strandat 1363.099 kb on - strandat 1363.099 kb on - strandat 1363.099 kb on - strandat 1363.099 kb on - strandat 1363.099 kb on - strandat 1363.099 kb on - strandat 1363.374 kb on + strandat 1363.380 kb on + strandat 1363.381 kb on - strandat 1363.403 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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1,362,559 + -1.0
1,363,098 + +1.7
1,363,098 + +0.4
1,363,098 + +1.6
1,363,098 + +0.5
1,363,098 + +1.2
1,363,098 + +1.2
1,363,098 + +1.7
1,363,098 + +1.8
1,363,099 - +0.6
1,363,099 - -1.0
1,363,099 - -1.6
1,363,099 - -0.2
1,363,099 - -2.1
1,363,099 - -0.2
1,363,099 - +0.1
1,363,099 - -1.2
1,363,099 - -0.6
1,363,374 + -0.2
1,363,380 + +0.2
1,363,381 - +0.7
1,363,403 + +0.2

Or see this region's nucleotide sequence