Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1133

Experiment: Def Benzalkonium Chloride 0.002 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1132 and Psest_1133 are separated by 172 nucleotidesPsest_1133 and Psest_1134 are separated by 119 nucleotides Psest_1132: Psest_1132 - mutator mutT protein, at 1,228,882 to 1,229,820 _1132 Psest_1133: Psest_1133 - peroxiredoxin, at 1,229,993 to 1,230,556 _1133 Psest_1134: Psest_1134 - alkyl hydroperoxide reductase, F subunit, at 1,230,676 to 1,232,238 _1134 Position (kb) 1229 1230 1231Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1229.218 kb on + strand, within Psest_1132at 1229.218 kb on + strand, within Psest_1132at 1229.218 kb on + strand, within Psest_1132at 1229.219 kb on - strand, within Psest_1132at 1229.392 kb on + strand, within Psest_1132at 1229.393 kb on - strand, within Psest_1132at 1229.393 kb on - strand, within Psest_1132at 1229.615 kb on + strand, within Psest_1132at 1229.705 kb on + strand, within Psest_1132at 1229.726 kb on - strand, within Psest_1132at 1229.836 kb on + strandat 1229.836 kb on + strandat 1229.836 kb on + strandat 1229.836 kb on + strandat 1229.837 kb on - strandat 1229.837 kb on - strandat 1229.837 kb on - strandat 1229.837 kb on - strandat 1229.861 kb on + strandat 1229.861 kb on + strandat 1229.875 kb on + strandat 1229.945 kb on + strandat 1229.945 kb on + strandat 1229.950 kb on + strandat 1230.554 kb on + strandat 1230.554 kb on + strandat 1230.554 kb on + strandat 1230.554 kb on + strandat 1230.555 kb on - strandat 1230.643 kb on - strandat 1231.195 kb on + strand, within Psest_1134at 1231.360 kb on + strand, within Psest_1134at 1231.360 kb on + strand, within Psest_1134at 1231.360 kb on + strand, within Psest_1134

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml
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1,229,218 + Psest_1132 0.36 +0.4
1,229,218 + Psest_1132 0.36 -0.6
1,229,218 + Psest_1132 0.36 -0.7
1,229,219 - Psest_1132 0.36 -1.0
1,229,392 + Psest_1132 0.54 -1.1
1,229,393 - Psest_1132 0.54 +0.1
1,229,393 - Psest_1132 0.54 -1.8
1,229,615 + Psest_1132 0.78 -4.1
1,229,705 + Psest_1132 0.88 -0.8
1,229,726 - Psest_1132 0.90 -2.0
1,229,836 + +1.2
1,229,836 + +1.9
1,229,836 + -0.1
1,229,836 + +0.4
1,229,837 - +0.6
1,229,837 - -0.7
1,229,837 - +0.2
1,229,837 - -1.9
1,229,861 + -0.6
1,229,861 + +1.3
1,229,875 + +0.2
1,229,945 + -0.9
1,229,945 + +0.1
1,229,950 + +1.1
1,230,554 + +1.1
1,230,554 + +1.7
1,230,554 + +1.6
1,230,554 + +1.7
1,230,555 - +4.0
1,230,643 - -0.1
1,231,195 + Psest_1134 0.33 +2.4
1,231,360 + Psest_1134 0.44 +0.4
1,231,360 + Psest_1134 0.44 -1.1
1,231,360 + Psest_1134 0.44 +1.0

Or see this region's nucleotide sequence