Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1091 and Psest_1092 are separated by 69 nucleotides Psest_1092 and Psest_1093 are separated by 2 nucleotides
Psest_1091: Psest_1091 - ABC-type branched-chain amino acid transport systems, periplasmic component, at 1,181,877 to 1,183,094
_1091
Psest_1092: Psest_1092 - Branched-chain amino acid ABC-type transport system, permease components, at 1,183,164 to 1,184,051
_1092
Psest_1093: Psest_1093 - ABC-type branched-chain amino acid transport system, permease component, at 1,184,054 to 1,185,061
_1093
Position (kb)
1183
1184
1185 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1182.315 kb on + strand, within Psest_1091 at 1182.315 kb on + strand, within Psest_1091 at 1182.315 kb on + strand, within Psest_1091 at 1182.316 kb on - strand, within Psest_1091 at 1182.316 kb on - strand, within Psest_1091 at 1182.325 kb on - strand, within Psest_1091 at 1182.325 kb on - strand, within Psest_1091 at 1182.325 kb on - strand, within Psest_1091 at 1182.325 kb on - strand, within Psest_1091 at 1182.325 kb on - strand, within Psest_1091 at 1182.381 kb on + strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.382 kb on - strand, within Psest_1091 at 1182.400 kb on - strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.510 kb on + strand, within Psest_1091 at 1182.511 kb on - strand, within Psest_1091 at 1182.511 kb on - strand, within Psest_1091 at 1182.511 kb on - strand, within Psest_1091 at 1182.511 kb on - strand, within Psest_1091 at 1182.511 kb on - strand, within Psest_1091 at 1182.511 kb on - strand, within Psest_1091 at 1182.511 kb on - strand, within Psest_1091 at 1182.756 kb on + strand, within Psest_1091 at 1182.760 kb on - strand, within Psest_1091 at 1182.760 kb on - strand, within Psest_1091 at 1182.804 kb on + strand, within Psest_1091 at 1182.804 kb on + strand, within Psest_1091 at 1182.805 kb on - strand, within Psest_1091 at 1182.823 kb on - strand, within Psest_1091 at 1182.823 kb on - strand, within Psest_1091 at 1182.957 kb on + strand, within Psest_1091 at 1182.957 kb on + strand, within Psest_1091 at 1182.957 kb on + strand, within Psest_1091 at 1182.957 kb on + strand, within Psest_1091 at 1182.957 kb on + strand, within Psest_1091 at 1182.957 kb on + strand, within Psest_1091 at 1182.957 kb on + strand, within Psest_1091 at 1182.957 kb on + strand, within Psest_1091 at 1182.957 kb on + strand, within Psest_1091 at 1182.957 kb on + strand, within Psest_1091 at 1182.957 kb on + strand, within Psest_1091 at 1182.957 kb on + strand, within Psest_1091 at 1182.957 kb on + strand, within Psest_1091 at 1182.957 kb on + strand, within Psest_1091 at 1182.958 kb on - strand, within Psest_1091 at 1182.958 kb on - strand, within Psest_1091 at 1182.958 kb on - strand, within Psest_1091 at 1182.958 kb on - strand, within Psest_1091 at 1182.958 kb on - strand, within Psest_1091 at 1182.958 kb on - strand, within Psest_1091 at 1182.958 kb on - strand, within Psest_1091 at 1182.958 kb on - strand, within Psest_1091 at 1182.958 kb on - strand, within Psest_1091 at 1182.958 kb on - strand, within Psest_1091 at 1182.958 kb on - strand, within Psest_1091 at 1182.958 kb on - strand, within Psest_1091 at 1183.008 kb on + strand at 1183.008 kb on + strand at 1183.008 kb on + strand at 1183.008 kb on + strand at 1183.008 kb on + strand at 1183.008 kb on + strand at 1183.009 kb on - strand at 1183.009 kb on - strand at 1183.009 kb on - strand at 1183.009 kb on - strand at 1183.009 kb on - strand at 1183.009 kb on - strand at 1183.314 kb on + strand, within Psest_1092 at 1183.314 kb on + strand, within Psest_1092 at 1183.314 kb on + strand, within Psest_1092 at 1183.315 kb on - strand, within Psest_1092 at 1183.315 kb on - strand, within Psest_1092 at 1183.315 kb on - strand, within Psest_1092 at 1183.315 kb on - strand, within Psest_1092 at 1183.315 kb on - strand, within Psest_1092 at 1183.315 kb on - strand, within Psest_1092 at 1183.315 kb on - strand, within Psest_1092 at 1183.353 kb on + strand, within Psest_1092 at 1183.353 kb on + strand, within Psest_1092 at 1183.353 kb on + strand, within Psest_1092 at 1183.353 kb on + strand, within Psest_1092 at 1183.354 kb on - strand, within Psest_1092 at 1183.368 kb on + strand, within Psest_1092 at 1183.369 kb on - strand, within Psest_1092 at 1183.369 kb on - strand, within Psest_1092 at 1183.609 kb on - strand, within Psest_1092 at 1183.659 kb on + strand, within Psest_1092 at 1183.659 kb on + strand, within Psest_1092 at 1183.659 kb on + strand, within Psest_1092 at 1183.660 kb on - strand, within Psest_1092 at 1183.689 kb on + strand, within Psest_1092 at 1183.690 kb on - strand, within Psest_1092 at 1183.690 kb on - strand, within Psest_1092 at 1183.745 kb on - strand, within Psest_1092 at 1183.767 kb on + strand, within Psest_1092 at 1183.767 kb on + strand, within Psest_1092 at 1183.767 kb on + strand, within Psest_1092 at 1183.768 kb on - strand, within Psest_1092 at 1183.768 kb on - strand, within Psest_1092 at 1183.768 kb on - strand, within Psest_1092 at 1183.768 kb on - strand, within Psest_1092 at 1183.768 kb on - strand, within Psest_1092 at 1183.768 kb on - strand, within Psest_1092 at 1183.768 kb on - strand, within Psest_1092 at 1183.768 kb on - strand, within Psest_1092 at 1183.768 kb on - strand, within Psest_1092 at 1183.768 kb on - strand, within Psest_1092 at 1183.768 kb on - strand, within Psest_1092 at 1183.773 kb on + strand, within Psest_1092 at 1184.150 kb on + strand at 1184.150 kb on + strand at 1184.150 kb on + strand at 1184.150 kb on + strand at 1184.151 kb on - strand at 1184.151 kb on - strand at 1184.151 kb on - strand at 1184.195 kb on + strand, within Psest_1093 at 1184.315 kb on + strand, within Psest_1093 at 1184.316 kb on - strand, within Psest_1093 at 1184.327 kb on + strand, within Psest_1093 at 1184.327 kb on + strand, within Psest_1093 at 1184.327 kb on + strand, within Psest_1093 at 1184.328 kb on - strand, within Psest_1093 at 1184.342 kb on + strand, within Psest_1093 at 1184.342 kb on + strand, within Psest_1093 at 1184.342 kb on + strand, within Psest_1093 at 1184.343 kb on - strand, within Psest_1093 at 1184.343 kb on - strand, within Psest_1093 at 1184.343 kb on - strand, within Psest_1093 at 1184.343 kb on - strand, within Psest_1093 at 1184.444 kb on + strand, within Psest_1093 at 1184.444 kb on + strand, within Psest_1093 at 1184.444 kb on + strand, within Psest_1093 at 1184.444 kb on + strand, within Psest_1093 at 1184.445 kb on - strand, within Psest_1093 at 1184.591 kb on + strand, within Psest_1093 at 1184.591 kb on + strand, within Psest_1093 at 1184.591 kb on + strand, within Psest_1093 at 1184.591 kb on + strand, within Psest_1093 at 1184.591 kb on + strand, within Psest_1093 at 1184.591 kb on + strand, within Psest_1093 at 1184.591 kb on + strand, within Psest_1093 at 1184.592 kb on - strand, within Psest_1093 at 1184.592 kb on - strand, within Psest_1093 at 1184.592 kb on - strand, within Psest_1093 at 1184.592 kb on - strand, within Psest_1093 at 1184.592 kb on - strand, within Psest_1093 at 1184.592 kb on - strand, within Psest_1093 at 1184.592 kb on - strand, within Psest_1093 at 1184.594 kb on + strand, within Psest_1093 at 1184.594 kb on + strand, within Psest_1093 at 1184.594 kb on + strand, within Psest_1093 at 1184.595 kb on - strand, within Psest_1093 at 1184.595 kb on - strand, within Psest_1093 at 1184.595 kb on - strand, within Psest_1093
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 1,182,315 + Psest_1091 0.36 -0.6 1,182,315 + Psest_1091 0.36 -1.3 1,182,315 + Psest_1091 0.36 +2.8 1,182,316 - Psest_1091 0.36 -0.5 1,182,316 - Psest_1091 0.36 +1.0 1,182,325 - Psest_1091 0.37 +0.1 1,182,325 - Psest_1091 0.37 -0.8 1,182,325 - Psest_1091 0.37 -0.1 1,182,325 - Psest_1091 0.37 +0.9 1,182,325 - Psest_1091 0.37 +0.2 1,182,381 + Psest_1091 0.41 -0.4 1,182,382 - Psest_1091 0.41 -0.2 1,182,382 - Psest_1091 0.41 +0.8 1,182,382 - Psest_1091 0.41 +0.2 1,182,382 - Psest_1091 0.41 -0.4 1,182,382 - Psest_1091 0.41 -0.2 1,182,382 - Psest_1091 0.41 -0.8 1,182,382 - Psest_1091 0.41 -0.2 1,182,382 - Psest_1091 0.41 -1.6 1,182,400 - Psest_1091 0.43 +0.3 1,182,510 + Psest_1091 0.52 +0.2 1,182,510 + Psest_1091 0.52 +1.2 1,182,510 + Psest_1091 0.52 +0.3 1,182,510 + Psest_1091 0.52 +0.3 1,182,510 + Psest_1091 0.52 -1.3 1,182,510 + Psest_1091 0.52 +0.6 1,182,510 + Psest_1091 0.52 -0.1 1,182,510 + Psest_1091 0.52 -0.8 1,182,510 + Psest_1091 0.52 -0.8 1,182,510 + Psest_1091 0.52 -0.0 1,182,510 + Psest_1091 0.52 -1.8 1,182,510 + Psest_1091 0.52 -0.4 1,182,511 - Psest_1091 0.52 +0.7 1,182,511 - Psest_1091 0.52 +0.2 1,182,511 - Psest_1091 0.52 +0.1 1,182,511 - Psest_1091 0.52 -0.8 1,182,511 - Psest_1091 0.52 +0.2 1,182,511 - Psest_1091 0.52 -0.6 1,182,511 - Psest_1091 0.52 +0.4 1,182,756 + Psest_1091 0.72 -1.5 1,182,760 - Psest_1091 0.72 +0.7 1,182,760 - Psest_1091 0.72 +2.2 1,182,804 + Psest_1091 0.76 -0.0 1,182,804 + Psest_1091 0.76 +0.6 1,182,805 - Psest_1091 0.76 -0.9 1,182,823 - Psest_1091 0.78 -1.0 1,182,823 - Psest_1091 0.78 -1.0 1,182,957 + Psest_1091 0.89 +1.1 1,182,957 + Psest_1091 0.89 +1.1 1,182,957 + Psest_1091 0.89 -0.4 1,182,957 + Psest_1091 0.89 +1.2 1,182,957 + Psest_1091 0.89 -0.4 1,182,957 + Psest_1091 0.89 -0.4 1,182,957 + Psest_1091 0.89 -0.3 1,182,957 + Psest_1091 0.89 +0.2 1,182,957 + Psest_1091 0.89 +1.0 1,182,957 + Psest_1091 0.89 +1.2 1,182,957 + Psest_1091 0.89 -0.3 1,182,957 + Psest_1091 0.89 +0.1 1,182,957 + Psest_1091 0.89 +3.1 1,182,957 + Psest_1091 0.89 +0.2 1,182,958 - Psest_1091 0.89 -0.0 1,182,958 - Psest_1091 0.89 -1.4 1,182,958 - Psest_1091 0.89 -2.1 1,182,958 - Psest_1091 0.89 +2.2 1,182,958 - Psest_1091 0.89 -2.4 1,182,958 - Psest_1091 0.89 -0.6 1,182,958 - Psest_1091 0.89 -0.3 1,182,958 - Psest_1091 0.89 +0.6 1,182,958 - Psest_1091 0.89 -0.2 1,182,958 - Psest_1091 0.89 -0.7 1,182,958 - Psest_1091 0.89 +0.4 1,182,958 - Psest_1091 0.89 +0.4 1,183,008 + +0.1 1,183,008 + +1.0 1,183,008 + +0.8 1,183,008 + +1.5 1,183,008 + +1.4 1,183,008 + +0.6 1,183,009 - -1.1 1,183,009 - -0.2 1,183,009 - +0.3 1,183,009 - +0.5 1,183,009 - +0.5 1,183,009 - -0.1 1,183,314 + Psest_1092 0.17 +1.6 1,183,314 + Psest_1092 0.17 +0.8 1,183,314 + Psest_1092 0.17 +1.6 1,183,315 - Psest_1092 0.17 +0.1 1,183,315 - Psest_1092 0.17 +0.5 1,183,315 - Psest_1092 0.17 +0.9 1,183,315 - Psest_1092 0.17 +1.7 1,183,315 - Psest_1092 0.17 +0.6 1,183,315 - Psest_1092 0.17 -0.5 1,183,315 - Psest_1092 0.17 +0.2 1,183,353 + Psest_1092 0.21 +0.8 1,183,353 + Psest_1092 0.21 +0.7 1,183,353 + Psest_1092 0.21 -0.1 1,183,353 + Psest_1092 0.21 +1.9 1,183,354 - Psest_1092 0.21 -0.8 1,183,368 + Psest_1092 0.23 +1.4 1,183,369 - Psest_1092 0.23 -1.3 1,183,369 - Psest_1092 0.23 -1.2 1,183,609 - Psest_1092 0.50 +0.6 1,183,659 + Psest_1092 0.56 +1.0 1,183,659 + Psest_1092 0.56 +0.5 1,183,659 + Psest_1092 0.56 +0.5 1,183,660 - Psest_1092 0.56 -1.3 1,183,689 + Psest_1092 0.59 +0.2 1,183,690 - Psest_1092 0.59 -0.5 1,183,690 - Psest_1092 0.59 -1.4 1,183,745 - Psest_1092 0.65 +1.0 1,183,767 + Psest_1092 0.68 +0.6 1,183,767 + Psest_1092 0.68 -0.0 1,183,767 + Psest_1092 0.68 -1.3 1,183,768 - Psest_1092 0.68 +0.4 1,183,768 - Psest_1092 0.68 -0.3 1,183,768 - Psest_1092 0.68 -0.4 1,183,768 - Psest_1092 0.68 +1.2 1,183,768 - Psest_1092 0.68 -1.4 1,183,768 - Psest_1092 0.68 +0.1 1,183,768 - Psest_1092 0.68 -1.0 1,183,768 - Psest_1092 0.68 -0.2 1,183,768 - Psest_1092 0.68 +0.2 1,183,768 - Psest_1092 0.68 -0.9 1,183,768 - Psest_1092 0.68 -0.5 1,183,773 + Psest_1092 0.69 +0.4 1,184,150 + -0.4 1,184,150 + +1.0 1,184,150 + -0.6 1,184,150 + +3.1 1,184,151 - -0.4 1,184,151 - +3.7 1,184,151 - -0.5 1,184,195 + Psest_1093 0.14 +0.2 1,184,315 + Psest_1093 0.26 +0.1 1,184,316 - Psest_1093 0.26 -1.2 1,184,327 + Psest_1093 0.27 +0.5 1,184,327 + Psest_1093 0.27 +0.7 1,184,327 + Psest_1093 0.27 +1.2 1,184,328 - Psest_1093 0.27 -0.0 1,184,342 + Psest_1093 0.29 -0.4 1,184,342 + Psest_1093 0.29 -0.0 1,184,342 + Psest_1093 0.29 +0.0 1,184,343 - Psest_1093 0.29 +0.4 1,184,343 - Psest_1093 0.29 -2.1 1,184,343 - Psest_1093 0.29 +0.2 1,184,343 - Psest_1093 0.29 +0.2 1,184,444 + Psest_1093 0.39 +1.6 1,184,444 + Psest_1093 0.39 +1.4 1,184,444 + Psest_1093 0.39 +0.5 1,184,444 + Psest_1093 0.39 +1.7 1,184,445 - Psest_1093 0.39 -0.8 1,184,591 + Psest_1093 0.53 +1.2 1,184,591 + Psest_1093 0.53 -0.5 1,184,591 + Psest_1093 0.53 +1.3 1,184,591 + Psest_1093 0.53 +1.0 1,184,591 + Psest_1093 0.53 +0.5 1,184,591 + Psest_1093 0.53 +1.7 1,184,591 + Psest_1093 0.53 -0.4 1,184,592 - Psest_1093 0.53 -0.8 1,184,592 - Psest_1093 0.53 -2.0 1,184,592 - Psest_1093 0.53 +1.2 1,184,592 - Psest_1093 0.53 -1.2 1,184,592 - Psest_1093 0.53 -0.2 1,184,592 - Psest_1093 0.53 -0.5 1,184,592 - Psest_1093 0.53 +0.4 1,184,594 + Psest_1093 0.54 +1.8 1,184,594 + Psest_1093 0.54 -0.8 1,184,594 + Psest_1093 0.54 +1.5 1,184,595 - Psest_1093 0.54 +0.5 1,184,595 - Psest_1093 0.54 -0.2 1,184,595 - Psest_1093 0.54 -0.4
Or see this region's nucleotide sequence