Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0103 and Psest_0104 are separated by 2 nucleotides Psest_0104 and Psest_0105 overlap by 8 nucleotides Psest_0105 and Psest_0106 overlap by 4 nucleotides Psest_0106 and Psest_0107 are separated by 72 nucleotides
Psest_0103: Psest_0103 - triphosphoribosyl-dephospho-CoA synthase MdcB, at 103,017 to 103,895
_0103
Psest_0104: Psest_0104 - malonate decarboxylase acyl carrier protein, at 103,898 to 104,197
_0104
Psest_0105: Psest_0105 - malonate decarboxylase, beta subunit, at 104,190 to 105,056
_0105
Psest_0106: Psest_0106 - malonate decarboxylase, gamma subunit, at 105,053 to 105,838
_0106
Psest_0107: Psest_0107 - malonate decarboxylase holo-[acyl-carrier-protein] synthase, at 105,911 to 106,528
_0107
Position (kb)
104
105
106 Strain fitness (log2 ratio)
-1
0
1
2
3 at 103.327 kb on + strand, within Psest_0103 at 103.327 kb on + strand, within Psest_0103 at 103.328 kb on - strand, within Psest_0103 at 103.328 kb on - strand, within Psest_0103 at 103.466 kb on + strand, within Psest_0103 at 103.466 kb on + strand, within Psest_0103 at 104.640 kb on + strand, within Psest_0105 at 104.640 kb on + strand, within Psest_0105 at 104.718 kb on + strand, within Psest_0105 at 104.719 kb on - strand, within Psest_0105 at 104.719 kb on - strand, within Psest_0105 at 104.797 kb on - strand, within Psest_0105 at 104.874 kb on + strand, within Psest_0105 at 104.874 kb on + strand, within Psest_0105 at 104.874 kb on + strand, within Psest_0105 at 104.874 kb on + strand, within Psest_0105 at 104.874 kb on + strand, within Psest_0105 at 104.874 kb on + strand, within Psest_0105 at 104.874 kb on + strand, within Psest_0105 at 104.874 kb on + strand, within Psest_0105 at 104.875 kb on - strand, within Psest_0105 at 104.875 kb on - strand, within Psest_0105 at 104.875 kb on - strand, within Psest_0105 at 105.155 kb on - strand, within Psest_0106 at 105.164 kb on + strand, within Psest_0106 at 105.164 kb on + strand, within Psest_0106 at 105.164 kb on + strand, within Psest_0106 at 105.165 kb on - strand, within Psest_0106 at 105.165 kb on - strand, within Psest_0106 at 105.325 kb on - strand, within Psest_0106 at 105.339 kb on - strand, within Psest_0106 at 105.621 kb on - strand, within Psest_0106 at 105.635 kb on + strand, within Psest_0106 at 105.635 kb on + strand, within Psest_0106 at 105.636 kb on - strand, within Psest_0106 at 105.636 kb on - strand, within Psest_0106 at 105.636 kb on - strand, within Psest_0106 at 105.636 kb on - strand, within Psest_0106 at 105.636 kb on - strand, within Psest_0106 at 105.908 kb on + strand at 105.908 kb on + strand at 105.908 kb on + strand at 105.909 kb on - strand at 105.909 kb on - strand at 105.909 kb on - strand at 105.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 103,327 + Psest_0103 0.35 -0.1 103,327 + Psest_0103 0.35 +1.3 103,328 - Psest_0103 0.35 -0.7 103,328 - Psest_0103 0.35 +1.3 103,466 + Psest_0103 0.51 -1.4 103,466 + Psest_0103 0.51 +0.5 104,640 + Psest_0105 0.52 +0.9 104,640 + Psest_0105 0.52 -0.1 104,718 + Psest_0105 0.61 +0.2 104,719 - Psest_0105 0.61 -0.7 104,719 - Psest_0105 0.61 -0.1 104,797 - Psest_0105 0.70 +0.1 104,874 + Psest_0105 0.79 +0.9 104,874 + Psest_0105 0.79 +1.3 104,874 + Psest_0105 0.79 +2.3 104,874 + Psest_0105 0.79 +1.2 104,874 + Psest_0105 0.79 +1.5 104,874 + Psest_0105 0.79 +1.0 104,874 + Psest_0105 0.79 +2.5 104,874 + Psest_0105 0.79 +0.9 104,875 - Psest_0105 0.79 +0.9 104,875 - Psest_0105 0.79 +1.9 104,875 - Psest_0105 0.79 +0.9 105,155 - Psest_0106 0.13 -0.1 105,164 + Psest_0106 0.14 +1.3 105,164 + Psest_0106 0.14 +2.1 105,164 + Psest_0106 0.14 -0.4 105,165 - Psest_0106 0.14 +0.7 105,165 - Psest_0106 0.14 -0.1 105,325 - Psest_0106 0.35 -0.7 105,339 - Psest_0106 0.36 +3.5 105,621 - Psest_0106 0.72 +2.5 105,635 + Psest_0106 0.74 +0.8 105,635 + Psest_0106 0.74 +2.5 105,636 - Psest_0106 0.74 +0.6 105,636 - Psest_0106 0.74 -0.7 105,636 - Psest_0106 0.74 +0.3 105,636 - Psest_0106 0.74 +0.3 105,636 - Psest_0106 0.74 -0.7 105,908 + +1.2 105,908 + -0.8 105,908 + +0.9 105,909 - +0.9 105,909 - +0.9 105,909 - -0.7 105,909 - +0.9
Or see this region's nucleotide sequence