Experiment: Def Benzalkonium Chloride 0.002 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1056 and Psest_1057 overlap by 4 nucleotides Psest_1057 and Psest_1058 are separated by 9 nucleotides Psest_1058 and Psest_1059 are separated by 565 nucleotides
Psest_1056: Psest_1056 - 2-isopropylmalate synthase, bacterial type, at 1,145,285 to 1,146,829
_1056
Psest_1057: Psest_1057 - hypothetical protein, at 1,146,826 to 1,147,635
_1057
Psest_1058: Psest_1058 - ribosomal-protein-alanine acetyltransferase, at 1,147,645 to 1,148,097
_1058
Psest_1059: Psest_1059 - hypothetical protein, at 1,148,663 to 1,149,205
_1059
Position (kb)
1147
1148
1149 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1146.764 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.625 kb on + strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.626 kb on - strand at 1147.637 kb on + strand at 1147.712 kb on - strand, within Psest_1058 at 1147.768 kb on + strand, within Psest_1058 at 1147.961 kb on + strand, within Psest_1058 at 1148.036 kb on - strand, within Psest_1058 at 1148.038 kb on + strand, within Psest_1058 at 1148.082 kb on + strand at 1148.082 kb on + strand at 1148.082 kb on + strand at 1148.082 kb on + strand at 1148.082 kb on + strand at 1148.083 kb on - strand at 1148.083 kb on - strand at 1148.083 kb on - strand at 1148.083 kb on - strand at 1148.230 kb on + strand at 1148.230 kb on + strand at 1148.409 kb on - strand at 1148.561 kb on + strand at 1148.561 kb on + strand at 1148.562 kb on - strand at 1148.562 kb on - strand at 1148.562 kb on - strand at 1148.580 kb on + strand at 1148.580 kb on + strand at 1148.580 kb on + strand at 1148.580 kb on + strand at 1148.581 kb on - strand at 1148.581 kb on - strand at 1148.581 kb on - strand at 1148.581 kb on - strand at 1148.587 kb on - strand at 1148.610 kb on + strand at 1148.610 kb on + strand at 1148.611 kb on - strand at 1148.611 kb on - strand at 1148.611 kb on - strand at 1148.612 kb on + strand at 1148.612 kb on + strand at 1148.612 kb on + strand at 1148.612 kb on + strand at 1148.613 kb on - strand at 1148.613 kb on - strand at 1148.613 kb on - strand at 1148.613 kb on - strand at 1148.613 kb on - strand at 1148.664 kb on + strand at 1148.664 kb on + strand at 1148.665 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Benzalkonium Chloride 0.002 mg/ml remove 1,146,764 + -1.4 1,147,625 + -0.2 1,147,625 + -0.8 1,147,625 + -1.4 1,147,625 + -0.4 1,147,625 + +0.4 1,147,625 + -0.4 1,147,625 + +1.7 1,147,625 + -0.2 1,147,625 + -0.2 1,147,626 - -2.0 1,147,626 - -1.3 1,147,626 - -3.4 1,147,626 - +0.2 1,147,626 - -1.3 1,147,626 - -2.2 1,147,626 - -0.4 1,147,626 - -3.0 1,147,626 - -0.6 1,147,626 - -2.0 1,147,626 - -1.7 1,147,626 - -0.4 1,147,626 - -0.6 1,147,626 - -1.6 1,147,637 + -0.6 1,147,712 - Psest_1058 0.15 -2.0 1,147,768 + Psest_1058 0.27 -0.2 1,147,961 + Psest_1058 0.70 -0.7 1,148,036 - Psest_1058 0.86 -1.2 1,148,038 + Psest_1058 0.87 -1.8 1,148,082 + +1.3 1,148,082 + -0.4 1,148,082 + +1.2 1,148,082 + +0.6 1,148,082 + +0.7 1,148,083 - +1.4 1,148,083 - -0.2 1,148,083 - +2.3 1,148,083 - -2.5 1,148,230 + -0.0 1,148,230 + +0.4 1,148,409 - -0.2 1,148,561 + -1.4 1,148,561 + -0.9 1,148,562 - +1.4 1,148,562 - -0.2 1,148,562 - +0.2 1,148,580 + +0.3 1,148,580 + -0.8 1,148,580 + +0.7 1,148,580 + +0.8 1,148,581 - +0.3 1,148,581 - +0.8 1,148,581 - +1.2 1,148,581 - +0.5 1,148,587 - +0.2 1,148,610 + -0.3 1,148,610 + -1.2 1,148,611 - +0.4 1,148,611 - +1.2 1,148,611 - +0.6 1,148,612 + -0.8 1,148,612 + -0.3 1,148,612 + +0.2 1,148,612 + -0.5 1,148,613 - -0.2 1,148,613 - -1.6 1,148,613 - -0.2 1,148,613 - -0.2 1,148,613 - +0.7 1,148,664 + -0.4 1,148,664 + -0.7 1,148,665 - -1.2
Or see this region's nucleotide sequence