Experiment: Def Nalidixic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0390 and Psest_0391 are separated by 436 nucleotides Psest_0391 and Psest_0392 are separated by 195 nucleotides
Psest_0390: Psest_0390 - Short-chain dehydrogenases of various substrate specificities, at 417,981 to 418,973
_0390
Psest_0391: Psest_0391 - Uncharacterized homolog of Blt101, at 419,410 to 419,568
_0391
Psest_0392: Psest_0392 - Signal transduction histidine kinase, at 419,764 to 423,273
_0392
Position (kb) 419
420 Strain fitness (log2 ratio) -2
-1
0
1 at 418.639 kb on + strand, within Psest_0390 at 418.639 kb on + strand, within Psest_0390 at 418.640 kb on - strand, within Psest_0390 at 418.640 kb on - strand, within Psest_0390 at 418.973 kb on + strand at 418.974 kb on - strand at 419.219 kb on + strand at 419.220 kb on - strand at 419.220 kb on - strand at 419.220 kb on - strand at 419.220 kb on - strand at 419.220 kb on - strand at 419.369 kb on + strand at 419.653 kb on - strand at 419.653 kb on - strand at 419.653 kb on - strand at 419.655 kb on + strand at 419.656 kb on - strand at 419.685 kb on - strand at 419.804 kb on + strand at 419.814 kb on + strand at 419.875 kb on + strand at 419.875 kb on + strand at 419.875 kb on + strand at 419.876 kb on - strand at 419.876 kb on - strand at 419.876 kb on - strand at 419.878 kb on + strand at 419.878 kb on + strand at 419.878 kb on + strand at 419.878 kb on + strand at 419.878 kb on + strand at 419.878 kb on + strand at 419.879 kb on - strand at 420.070 kb on + strand at 420.193 kb on + strand, within Psest_0392 at 420.193 kb on + strand, within Psest_0392 at 420.193 kb on + strand, within Psest_0392 at 420.193 kb on + strand, within Psest_0392 at 420.294 kb on + strand, within Psest_0392 at 420.295 kb on - strand, within Psest_0392 at 420.295 kb on - strand, within Psest_0392 at 420.370 kb on + strand, within Psest_0392 at 420.370 kb on + strand, within Psest_0392 at 420.370 kb on + strand, within Psest_0392 at 420.370 kb on + strand, within Psest_0392 at 420.371 kb on - strand, within Psest_0392 at 420.371 kb on - strand, within Psest_0392 at 420.371 kb on - strand, within Psest_0392 at 420.409 kb on + strand, within Psest_0392 at 420.409 kb on + strand, within Psest_0392 at 420.409 kb on + strand, within Psest_0392 at 420.409 kb on + strand, within Psest_0392 at 420.410 kb on - strand, within Psest_0392 at 420.410 kb on - strand, within Psest_0392 at 420.410 kb on - strand, within Psest_0392 at 420.410 kb on - strand, within Psest_0392 at 420.563 kb on - strand, within Psest_0392
Per-strain Table
Position Strand Gene LocusTag Fraction Def Nalidixic 0.001 mg/ml remove 418,639 + Psest_0390 0.66 +1.3 418,639 + Psest_0390 0.66 -0.0 418,640 - Psest_0390 0.66 +1.0 418,640 - Psest_0390 0.66 +0.3 418,973 + -0.3 418,974 - +1.5 419,219 + +1.3 419,220 - +0.3 419,220 - +0.3 419,220 - +0.2 419,220 - +0.3 419,220 - -1.3 419,369 + +0.3 419,653 - +1.0 419,653 - -1.3 419,653 - -0.7 419,655 + +1.3 419,656 - -0.7 419,685 - -0.7 419,804 + +0.3 419,814 + -1.3 419,875 + -0.2 419,875 + -2.0 419,875 + -0.1 419,876 - -0.3 419,876 - -0.1 419,876 - +0.2 419,878 + -0.2 419,878 + -0.3 419,878 + -0.0 419,878 + -1.4 419,878 + -0.1 419,878 + +0.1 419,879 - -0.7 420,070 + -1.3 420,193 + Psest_0392 0.12 -0.1 420,193 + Psest_0392 0.12 -1.7 420,193 + Psest_0392 0.12 +0.0 420,193 + Psest_0392 0.12 -1.7 420,294 + Psest_0392 0.15 -1.3 420,295 - Psest_0392 0.15 -0.4 420,295 - Psest_0392 0.15 -0.1 420,370 + Psest_0392 0.17 -0.7 420,370 + Psest_0392 0.17 +1.0 420,370 + Psest_0392 0.17 -0.1 420,370 + Psest_0392 0.17 -0.7 420,371 - Psest_0392 0.17 -0.2 420,371 - Psest_0392 0.17 -1.2 420,371 - Psest_0392 0.17 -0.7 420,409 + Psest_0392 0.18 -0.4 420,409 + Psest_0392 0.18 -1.4 420,409 + Psest_0392 0.18 +0.5 420,409 + Psest_0392 0.18 +0.8 420,410 - Psest_0392 0.18 +0.6 420,410 - Psest_0392 0.18 +0.2 420,410 - Psest_0392 0.18 -1.0 420,410 - Psest_0392 0.18 -1.5 420,563 - Psest_0392 0.23 -0.5
Or see this region's nucleotide sequence