Experiment: Def Nalidixic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0387 and Psest_0388 are separated by 188 nucleotides Psest_0388 and Psest_0389 overlap by 1 nucleotides Psest_0389 and Psest_0390 are separated by 5 nucleotides Psest_0390 and Psest_0391 are separated by 436 nucleotides Psest_0391 and Psest_0392 are separated by 195 nucleotides
Psest_0387: Psest_0387 - Membrane-bound serine protease (ClpP class), at 416,085 to 417,464
_0387
Psest_0388: Psest_0388 - hypothetical protein, at 417,653 to 417,778
_0388
Psest_0389: Psest_0389 - hypothetical protein, at 417,778 to 417,975
_0389
Psest_0390: Psest_0390 - Short-chain dehydrogenases of various substrate specificities, at 417,981 to 418,973
_0390
Psest_0391: Psest_0391 - Uncharacterized homolog of Blt101, at 419,410 to 419,568
_0391
Psest_0392: Psest_0392 - Signal transduction histidine kinase, at 419,764 to 423,273
_0392
Position (kb) 417
418
419 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 417.072 kb on - strand, within Psest_0387 at 417.145 kb on + strand, within Psest_0387 at 417.146 kb on - strand, within Psest_0387 at 417.146 kb on - strand, within Psest_0387 at 417.146 kb on - strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.154 kb on + strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.155 kb on - strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.196 kb on + strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.197 kb on - strand, within Psest_0387 at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.333 kb on + strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.334 kb on - strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.337 kb on + strand at 417.338 kb on - strand at 417.338 kb on - strand at 417.338 kb on - strand at 417.338 kb on - strand at 417.446 kb on + strand at 417.446 kb on + strand at 417.446 kb on + strand at 417.519 kb on - strand at 417.519 kb on - strand at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.886 kb on + strand, within Psest_0389 at 417.887 kb on - strand, within Psest_0389 at 417.887 kb on - strand, within Psest_0389 at 417.887 kb on - strand, within Psest_0389 at 418.639 kb on + strand, within Psest_0390 at 418.639 kb on + strand, within Psest_0390 at 418.640 kb on - strand, within Psest_0390 at 418.640 kb on - strand, within Psest_0390 at 418.973 kb on + strand at 418.974 kb on - strand at 419.219 kb on + strand at 419.220 kb on - strand at 419.220 kb on - strand at 419.220 kb on - strand at 419.220 kb on - strand at 419.220 kb on - strand at 419.369 kb on + strand at 419.653 kb on - strand at 419.653 kb on - strand at 419.653 kb on - strand at 419.655 kb on + strand at 419.656 kb on - strand at 419.685 kb on - strand at 419.804 kb on + strand at 419.814 kb on + strand at 419.875 kb on + strand at 419.875 kb on + strand at 419.875 kb on + strand at 419.876 kb on - strand at 419.876 kb on - strand at 419.876 kb on - strand at 419.878 kb on + strand at 419.878 kb on + strand at 419.878 kb on + strand at 419.878 kb on + strand at 419.878 kb on + strand at 419.878 kb on + strand at 419.879 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Nalidixic 0.001 mg/ml remove 417,072 - Psest_0387 0.72 +1.8 417,145 + Psest_0387 0.77 -0.7 417,146 - Psest_0387 0.77 +0.9 417,146 - Psest_0387 0.77 -0.7 417,146 - Psest_0387 0.77 +0.3 417,154 + Psest_0387 0.77 +0.7 417,154 + Psest_0387 0.77 +0.6 417,154 + Psest_0387 0.77 -0.4 417,154 + Psest_0387 0.77 +0.3 417,154 + Psest_0387 0.77 -1.7 417,154 + Psest_0387 0.77 -0.7 417,154 + Psest_0387 0.77 +1.3 417,154 + Psest_0387 0.77 +1.3 417,154 + Psest_0387 0.77 +2.3 417,154 + Psest_0387 0.77 -0.3 417,154 + Psest_0387 0.77 -1.3 417,154 + Psest_0387 0.77 +1.3 417,154 + Psest_0387 0.77 +1.9 417,155 - Psest_0387 0.78 -1.5 417,155 - Psest_0387 0.78 +1.3 417,155 - Psest_0387 0.78 +0.3 417,155 - Psest_0387 0.78 +0.7 417,155 - Psest_0387 0.78 -0.5 417,155 - Psest_0387 0.78 -1.3 417,155 - Psest_0387 0.78 -0.7 417,155 - Psest_0387 0.78 +0.3 417,155 - Psest_0387 0.78 +0.3 417,155 - Psest_0387 0.78 +0.1 417,155 - Psest_0387 0.78 +0.7 417,155 - Psest_0387 0.78 +0.8 417,155 - Psest_0387 0.78 -0.0 417,196 + Psest_0387 0.81 +0.0 417,196 + Psest_0387 0.81 +0.9 417,196 + Psest_0387 0.81 -0.3 417,196 + Psest_0387 0.81 +0.1 417,196 + Psest_0387 0.81 -1.7 417,196 + Psest_0387 0.81 -0.1 417,196 + Psest_0387 0.81 +0.3 417,196 + Psest_0387 0.81 +0.8 417,196 + Psest_0387 0.81 -0.0 417,196 + Psest_0387 0.81 +1.3 417,196 + Psest_0387 0.81 -0.7 417,196 + Psest_0387 0.81 -0.7 417,196 + Psest_0387 0.81 +0.3 417,196 + Psest_0387 0.81 +0.3 417,196 + Psest_0387 0.81 -0.5 417,196 + Psest_0387 0.81 -1.3 417,196 + Psest_0387 0.81 -0.7 417,196 + Psest_0387 0.81 +1.1 417,196 + Psest_0387 0.81 -0.3 417,196 + Psest_0387 0.81 +0.3 417,196 + Psest_0387 0.81 -1.4 417,197 - Psest_0387 0.81 -1.3 417,197 - Psest_0387 0.81 +1.0 417,197 - Psest_0387 0.81 -2.0 417,197 - Psest_0387 0.81 -1.0 417,197 - Psest_0387 0.81 +0.2 417,197 - Psest_0387 0.81 -1.3 417,197 - Psest_0387 0.81 -0.3 417,197 - Psest_0387 0.81 -0.4 417,197 - Psest_0387 0.81 -0.0 417,197 - Psest_0387 0.81 +0.9 417,197 - Psest_0387 0.81 +1.4 417,197 - Psest_0387 0.81 -0.7 417,197 - Psest_0387 0.81 -0.7 417,197 - Psest_0387 0.81 -0.7 417,197 - Psest_0387 0.81 +0.1 417,333 + -0.2 417,333 + +1.6 417,333 + -0.0 417,333 + +0.7 417,333 + +2.1 417,333 + -1.5 417,333 + -1.0 417,333 + +1.3 417,333 + -0.9 417,334 - -0.3 417,334 - -0.3 417,334 - -0.3 417,334 - -0.4 417,334 - +0.2 417,334 - -0.3 417,334 - +0.5 417,334 - +0.3 417,334 - +0.6 417,334 - +1.3 417,337 + +2.1 417,337 + +0.5 417,337 + +0.2 417,337 + -0.4 417,337 + -1.3 417,338 - -2.5 417,338 - +0.8 417,338 - -2.3 417,338 - +0.7 417,446 + +0.5 417,446 + +0.8 417,446 + +0.3 417,519 - +2.9 417,519 - -0.9 417,886 + Psest_0389 0.55 +0.9 417,886 + Psest_0389 0.55 +0.6 417,886 + Psest_0389 0.55 -0.3 417,886 + Psest_0389 0.55 +1.5 417,886 + Psest_0389 0.55 -1.0 417,886 + Psest_0389 0.55 -0.1 417,887 - Psest_0389 0.55 +0.6 417,887 - Psest_0389 0.55 +1.2 417,887 - Psest_0389 0.55 +1.0 418,639 + Psest_0390 0.66 +1.3 418,639 + Psest_0390 0.66 -0.0 418,640 - Psest_0390 0.66 +1.0 418,640 - Psest_0390 0.66 +0.3 418,973 + -0.3 418,974 - +1.5 419,219 + +1.3 419,220 - +0.3 419,220 - +0.3 419,220 - +0.2 419,220 - +0.3 419,220 - -1.3 419,369 + +0.3 419,653 - +1.0 419,653 - -1.3 419,653 - -0.7 419,655 + +1.3 419,656 - -0.7 419,685 - -0.7 419,804 + +0.3 419,814 + -1.3 419,875 + -0.2 419,875 + -2.0 419,875 + -0.1 419,876 - -0.3 419,876 - -0.1 419,876 - +0.2 419,878 + -0.2 419,878 + -0.3 419,878 + -0.0 419,878 + -1.4 419,878 + -0.1 419,878 + +0.1 419,879 - -0.7
Or see this region's nucleotide sequence