Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0327

Experiment: Def Nalidixic 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0326 and Psest_0327 are separated by 144 nucleotidesPsest_0327 and Psest_0328 are separated by 95 nucleotides Psest_0326: Psest_0326 - Taurine catabolism dioxygenase TauD, TfdA family., at 348,819 to 349,715 _0326 Psest_0327: Psest_0327 - Transcriptional regulator, at 349,860 to 350,798 _0327 Psest_0328: Psest_0328 - transketolase, bacterial and yeast, at 350,894 to 352,891 _0328 Position (kb) 349 350 351Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 348.874 kb on + strandat 348.874 kb on + strandat 349.129 kb on + strand, within Psest_0326at 349.130 kb on - strand, within Psest_0326at 349.204 kb on + strand, within Psest_0326at 349.204 kb on + strand, within Psest_0326at 349.204 kb on + strand, within Psest_0326at 349.205 kb on - strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.276 kb on + strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.277 kb on - strand, within Psest_0326at 349.327 kb on + strand, within Psest_0326at 349.328 kb on - strand, within Psest_0326at 349.433 kb on + strand, within Psest_0326at 349.433 kb on + strand, within Psest_0326at 349.434 kb on - strand, within Psest_0326at 349.434 kb on - strand, within Psest_0326at 349.465 kb on + strand, within Psest_0326at 349.465 kb on + strand, within Psest_0326at 349.465 kb on + strand, within Psest_0326at 349.466 kb on - strand, within Psest_0326at 349.541 kb on - strand, within Psest_0326at 349.541 kb on - strand, within Psest_0326at 349.541 kb on - strand, within Psest_0326at 349.674 kb on + strandat 349.699 kb on + strandat 349.699 kb on + strandat 349.702 kb on + strandat 349.702 kb on + strandat 349.702 kb on + strandat 349.703 kb on - strandat 349.703 kb on - strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.798 kb on + strandat 349.799 kb on - strandat 349.799 kb on - strandat 349.799 kb on - strandat 349.799 kb on - strandat 349.799 kb on - strandat 349.855 kb on + strandat 349.902 kb on + strandat 349.903 kb on - strandat 349.903 kb on - strandat 350.033 kb on - strand, within Psest_0327at 350.139 kb on - strand, within Psest_0327at 350.139 kb on - strand, within Psest_0327at 350.178 kb on - strand, within Psest_0327at 350.424 kb on - strand, within Psest_0327at 350.424 kb on - strand, within Psest_0327at 350.682 kb on + strand, within Psest_0327at 350.682 kb on + strand, within Psest_0327at 350.682 kb on + strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.683 kb on - strand, within Psest_0327at 350.685 kb on + strand, within Psest_0327at 350.685 kb on + strand, within Psest_0327at 350.686 kb on - strand, within Psest_0327at 350.686 kb on - strand, within Psest_0327at 350.742 kb on + strandat 350.867 kb on + strandat 350.867 kb on + strandat 350.871 kb on + strandat 350.871 kb on + strandat 350.871 kb on + strandat 350.871 kb on + strandat 350.871 kb on + strandat 350.871 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Def Nalidixic 0.001 mg/ml
remove
348,874 + -2.7
348,874 + -2.1
349,129 + Psest_0326 0.35 -3.2
349,130 - Psest_0326 0.35 -1.8
349,204 + Psest_0326 0.43 -3.9
349,204 + Psest_0326 0.43 -4.4
349,204 + Psest_0326 0.43 -3.6
349,205 - Psest_0326 0.43 -4.6
349,276 + Psest_0326 0.51 -4.1
349,276 + Psest_0326 0.51 -3.1
349,276 + Psest_0326 0.51 -4.0
349,276 + Psest_0326 0.51 -4.5
349,276 + Psest_0326 0.51 -2.7
349,276 + Psest_0326 0.51 -3.0
349,276 + Psest_0326 0.51 -4.3
349,276 + Psest_0326 0.51 -3.2
349,276 + Psest_0326 0.51 -3.5
349,276 + Psest_0326 0.51 -5.2
349,276 + Psest_0326 0.51 -4.7
349,276 + Psest_0326 0.51 -3.1
349,276 + Psest_0326 0.51 -5.6
349,276 + Psest_0326 0.51 -6.7
349,276 + Psest_0326 0.51 -5.2
349,276 + Psest_0326 0.51 -4.3
349,276 + Psest_0326 0.51 -5.4
349,276 + Psest_0326 0.51 -4.9
349,276 + Psest_0326 0.51 -2.3
349,276 + Psest_0326 0.51 -2.5
349,276 + Psest_0326 0.51 -3.1
349,276 + Psest_0326 0.51 -4.0
349,276 + Psest_0326 0.51 -1.3
349,276 + Psest_0326 0.51 -5.1
349,276 + Psest_0326 0.51 -4.9
349,277 - Psest_0326 0.51 -3.7
349,277 - Psest_0326 0.51 -4.0
349,277 - Psest_0326 0.51 -4.9
349,277 - Psest_0326 0.51 -1.3
349,277 - Psest_0326 0.51 -4.1
349,277 - Psest_0326 0.51 -0.7
349,277 - Psest_0326 0.51 -2.3
349,277 - Psest_0326 0.51 -2.9
349,277 - Psest_0326 0.51 -4.3
349,277 - Psest_0326 0.51 -1.3
349,277 - Psest_0326 0.51 -3.2
349,277 - Psest_0326 0.51 -2.1
349,277 - Psest_0326 0.51 -3.2
349,277 - Psest_0326 0.51 -4.6
349,277 - Psest_0326 0.51 -4.1
349,277 - Psest_0326 0.51 -3.1
349,327 + Psest_0326 0.57 -2.5
349,328 - Psest_0326 0.57 -4.7
349,433 + Psest_0326 0.68 -4.5
349,433 + Psest_0326 0.68 -2.5
349,434 - Psest_0326 0.69 -5.0
349,434 - Psest_0326 0.69 -0.7
349,465 + Psest_0326 0.72 -0.7
349,465 + Psest_0326 0.72 -2.3
349,465 + Psest_0326 0.72 -1.3
349,466 - Psest_0326 0.72 -3.1
349,541 - Psest_0326 0.80 -4.3
349,541 - Psest_0326 0.80 -3.1
349,541 - Psest_0326 0.80 -5.0
349,674 + -5.6
349,699 + -2.7
349,699 + -3.6
349,702 + -4.7
349,702 + -3.1
349,702 + -5.3
349,703 - -6.3
349,703 - -3.1
349,798 + -2.3
349,798 + -3.1
349,798 + -4.7
349,798 + -3.9
349,798 + -5.2
349,798 + -4.1
349,798 + -4.2
349,798 + -4.5
349,798 + -3.7
349,798 + -2.7
349,798 + -2.9
349,798 + -2.9
349,798 + -1.7
349,799 - +2.4
349,799 - -0.1
349,799 - -1.3
349,799 - +0.8
349,799 - +0.0
349,855 + -2.3
349,902 + -2.9
349,903 - +0.1
349,903 - -0.1
350,033 - Psest_0327 0.18 +0.8
350,139 - Psest_0327 0.30 +0.3
350,139 - Psest_0327 0.30 +0.8
350,178 - Psest_0327 0.34 +0.3
350,424 - Psest_0327 0.60 -1.5
350,424 - Psest_0327 0.60 -0.3
350,682 + Psest_0327 0.88 -1.7
350,682 + Psest_0327 0.88 -1.2
350,682 + Psest_0327 0.88 -0.2
350,683 - Psest_0327 0.88 -1.2
350,683 - Psest_0327 0.88 -1.9
350,683 - Psest_0327 0.88 -1.7
350,683 - Psest_0327 0.88 -0.2
350,683 - Psest_0327 0.88 -1.5
350,683 - Psest_0327 0.88 +1.8
350,683 - Psest_0327 0.88 -1.3
350,683 - Psest_0327 0.88 -1.1
350,683 - Psest_0327 0.88 -1.3
350,683 - Psest_0327 0.88 -1.0
350,683 - Psest_0327 0.88 -1.7
350,685 + Psest_0327 0.88 -2.5
350,685 + Psest_0327 0.88 -1.3
350,686 - Psest_0327 0.88 -1.8
350,686 - Psest_0327 0.88 -2.0
350,742 + -3.1
350,867 + -0.2
350,867 + +1.8
350,871 + +2.1
350,871 + -0.2
350,871 + -1.1
350,871 + +1.3
350,871 + +0.5
350,871 + -1.9

Or see this region's nucleotide sequence