Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2827

Experiment: Def Nalidixic 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2826 and Psest_2827 are separated by 184 nucleotidesPsest_2827 and Psest_2828 are separated by 165 nucleotidesPsest_2828 and Psest_2829 overlap by 1 nucleotides Psest_2826: Psest_2826 - acetyl-CoA carboxylase, carboxyl transferase, alpha subunit, at 3,014,471 to 3,015,421 _2826 Psest_2827: Psest_2827 - DNA-directed DNA polymerase III (polc), at 3,015,606 to 3,019,127 _2827 Psest_2828: Psest_2828 - Ribonuclease HII, at 3,019,293 to 3,019,931 _2828 Psest_2829: Psest_2829 - lipid-A-disaccharide synthase, at 3,019,931 to 3,021,064 _2829 Position (kb) 3015 3016 3017 3018 3019 3020Strain fitness (log2 ratio) -2 -1 0 1at 3019.168 kb on + strandat 3019.169 kb on - strandat 3019.217 kb on + strandat 3019.218 kb on - strandat 3019.250 kb on + strandat 3019.250 kb on + strandat 3019.250 kb on + strandat 3019.251 kb on - strandat 3019.251 kb on - strandat 3019.251 kb on - strandat 3019.295 kb on - strandat 3019.625 kb on + strand, within Psest_2828

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Per-strain Table

Position Strand Gene LocusTag Fraction Def Nalidixic 0.001 mg/ml
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3,019,168 + -2.5
3,019,169 - +0.2
3,019,217 + -0.6
3,019,218 - -0.8
3,019,250 + -0.3
3,019,250 + -0.3
3,019,250 + +0.5
3,019,251 - -0.6
3,019,251 - -0.6
3,019,251 - -0.8
3,019,295 - -0.3
3,019,625 + Psest_2828 0.52 -0.8

Or see this region's nucleotide sequence