Experiment: Def Nalidixic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2619 and Psest_2620 overlap by 11 nucleotides Psest_2620 and Psest_2621 overlap by 7 nucleotides Psest_2621 and Psest_2622 overlap by 1 nucleotides Psest_2622 and Psest_2623 are separated by 11 nucleotides
Psest_2619: Psest_2619 - Flp pilus assembly protein, ATPase CpaF, at 2,801,614 to 2,803,038
_2619
Psest_2620: Psest_2620 - Flp pilus assembly protein, ATPase CpaE, at 2,803,028 to 2,804,257
_2620
Psest_2621: Psest_2621 - TadE-like protein., at 2,804,251 to 2,804,754
_2621
Psest_2622: Psest_2622 - TadE-like protein., at 2,804,754 to 2,805,224
_2622
Psest_2623: Psest_2623 - Flp pilus assembly protein TadG, at 2,805,236 to 2,806,570
_2623
Position (kb)
2803
2804
2805 Strain fitness (log2 ratio)
-1
0
1
2 at 2802.058 kb on + strand, within Psest_2619 at 2802.058 kb on + strand, within Psest_2619 at 2802.058 kb on + strand, within Psest_2619 at 2802.059 kb on - strand, within Psest_2619 at 2802.067 kb on - strand, within Psest_2619 at 2802.068 kb on - strand, within Psest_2619 at 2802.068 kb on - strand, within Psest_2619 at 2802.068 kb on - strand, within Psest_2619 at 2802.617 kb on + strand, within Psest_2619 at 2802.617 kb on + strand, within Psest_2619 at 2802.617 kb on + strand, within Psest_2619 at 2802.618 kb on - strand, within Psest_2619 at 2802.863 kb on + strand, within Psest_2619 at 2802.863 kb on + strand, within Psest_2619 at 2802.863 kb on + strand, within Psest_2619 at 2802.864 kb on - strand, within Psest_2619 at 2802.864 kb on - strand, within Psest_2619 at 2802.864 kb on - strand, within Psest_2619 at 2802.864 kb on - strand, within Psest_2619 at 2803.207 kb on - strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.401 kb on + strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.402 kb on - strand, within Psest_2620 at 2803.689 kb on - strand, within Psest_2620 at 2804.401 kb on + strand, within Psest_2621 at 2804.401 kb on + strand, within Psest_2621 at 2804.401 kb on + strand, within Psest_2621 at 2804.401 kb on + strand, within Psest_2621 at 2804.401 kb on + strand, within Psest_2621 at 2804.402 kb on - strand, within Psest_2621 at 2804.402 kb on - strand, within Psest_2621 at 2804.402 kb on - strand, within Psest_2621 at 2804.402 kb on - strand, within Psest_2621 at 2804.429 kb on - strand, within Psest_2621 at 2804.481 kb on - strand, within Psest_2621 at 2804.481 kb on - strand, within Psest_2621 at 2804.857 kb on + strand, within Psest_2622 at 2804.858 kb on - strand, within Psest_2622 at 2804.858 kb on - strand, within Psest_2622 at 2804.968 kb on + strand, within Psest_2622 at 2804.968 kb on + strand, within Psest_2622 at 2804.968 kb on + strand, within Psest_2622 at 2804.969 kb on - strand, within Psest_2622 at 2805.250 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Nalidixic 0.001 mg/ml remove 2,802,058 + Psest_2619 0.31 -1.5 2,802,058 + Psest_2619 0.31 +0.3 2,802,058 + Psest_2619 0.31 -0.5 2,802,059 - Psest_2619 0.31 -0.2 2,802,067 - Psest_2619 0.32 +0.0 2,802,068 - Psest_2619 0.32 -0.4 2,802,068 - Psest_2619 0.32 +0.7 2,802,068 - Psest_2619 0.32 -0.0 2,802,617 + Psest_2619 0.70 +1.3 2,802,617 + Psest_2619 0.70 +0.3 2,802,617 + Psest_2619 0.70 -0.5 2,802,618 - Psest_2619 0.70 -0.1 2,802,863 + Psest_2619 0.88 +0.3 2,802,863 + Psest_2619 0.88 -0.9 2,802,863 + Psest_2619 0.88 -0.1 2,802,864 - Psest_2619 0.88 -0.7 2,802,864 - Psest_2619 0.88 +1.3 2,802,864 - Psest_2619 0.88 +0.0 2,802,864 - Psest_2619 0.88 +0.8 2,803,207 - Psest_2620 0.15 +0.6 2,803,401 + Psest_2620 0.30 +1.9 2,803,401 + Psest_2620 0.30 -0.3 2,803,401 + Psest_2620 0.30 -0.0 2,803,401 + Psest_2620 0.30 -0.5 2,803,401 + Psest_2620 0.30 +0.7 2,803,401 + Psest_2620 0.30 -0.0 2,803,401 + Psest_2620 0.30 +1.3 2,803,401 + Psest_2620 0.30 +0.4 2,803,401 + Psest_2620 0.30 +0.6 2,803,402 - Psest_2620 0.30 +0.3 2,803,402 - Psest_2620 0.30 +0.7 2,803,402 - Psest_2620 0.30 +2.3 2,803,402 - Psest_2620 0.30 -0.4 2,803,402 - Psest_2620 0.30 +0.5 2,803,402 - Psest_2620 0.30 +1.5 2,803,402 - Psest_2620 0.30 -0.6 2,803,402 - Psest_2620 0.30 -0.1 2,803,402 - Psest_2620 0.30 -0.1 2,803,402 - Psest_2620 0.30 +0.3 2,803,402 - Psest_2620 0.30 +0.1 2,803,402 - Psest_2620 0.30 +0.4 2,803,402 - Psest_2620 0.30 -0.6 2,803,402 - Psest_2620 0.30 +0.1 2,803,402 - Psest_2620 0.30 +0.1 2,803,402 - Psest_2620 0.30 +2.1 2,803,402 - Psest_2620 0.30 +0.3 2,803,689 - Psest_2620 0.54 -0.2 2,804,401 + Psest_2621 0.30 +0.9 2,804,401 + Psest_2621 0.30 -0.7 2,804,401 + Psest_2621 0.30 -0.0 2,804,401 + Psest_2621 0.30 +0.1 2,804,401 + Psest_2621 0.30 -0.9 2,804,402 - Psest_2621 0.30 -1.0 2,804,402 - Psest_2621 0.30 -0.4 2,804,402 - Psest_2621 0.30 +2.3 2,804,402 - Psest_2621 0.30 +1.3 2,804,429 - Psest_2621 0.35 +0.7 2,804,481 - Psest_2621 0.46 +2.3 2,804,481 - Psest_2621 0.46 -0.6 2,804,857 + Psest_2622 0.22 -1.0 2,804,858 - Psest_2622 0.22 -0.4 2,804,858 - Psest_2622 0.22 +2.5 2,804,968 + Psest_2622 0.45 +0.3 2,804,968 + Psest_2622 0.45 +1.3 2,804,968 + Psest_2622 0.45 -0.6 2,804,969 - Psest_2622 0.46 +0.4 2,805,250 + -0.6
Or see this region's nucleotide sequence