Experiment: Def Nalidixic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2586 and Psest_2587 are separated by 146 nucleotides Psest_2587 and Psest_2588 are separated by 136 nucleotides
Psest_2586: Psest_2586 - FimV N-terminal domain, at 2,766,021 to 2,768,753
_2586
Psest_2587: Psest_2587 - Aspartate-semialdehyde dehydrogenase, at 2,768,900 to 2,769,910
_2587
Psest_2588: Psest_2588 - aspartate-semialdehyde dehydrogenase, gamma-proteobacterial, at 2,770,047 to 2,771,159
_2588
Position (kb)
2768
2769
2770 Strain fitness (log2 ratio)
-2
-1
0
1 at 2768.023 kb on - strand, within Psest_2586 at 2768.023 kb on - strand, within Psest_2586 at 2768.074 kb on - strand, within Psest_2586 at 2768.074 kb on - strand, within Psest_2586 at 2768.074 kb on - strand, within Psest_2586 at 2768.074 kb on - strand, within Psest_2586 at 2768.074 kb on - strand, within Psest_2586 at 2768.074 kb on - strand, within Psest_2586 at 2768.074 kb on - strand, within Psest_2586 at 2768.074 kb on - strand, within Psest_2586 at 2768.074 kb on - strand, within Psest_2586 at 2768.074 kb on - strand, within Psest_2586 at 2768.074 kb on - strand, within Psest_2586 at 2768.163 kb on + strand, within Psest_2586 at 2768.163 kb on + strand, within Psest_2586 at 2768.163 kb on + strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.164 kb on - strand, within Psest_2586 at 2768.198 kb on - strand, within Psest_2586 at 2768.198 kb on - strand, within Psest_2586 at 2768.313 kb on - strand, within Psest_2586 at 2768.353 kb on + strand, within Psest_2586 at 2768.379 kb on - strand, within Psest_2586 at 2768.379 kb on - strand, within Psest_2586 at 2768.381 kb on - strand, within Psest_2586 at 2768.412 kb on + strand, within Psest_2586 at 2768.413 kb on - strand, within Psest_2586 at 2768.413 kb on - strand, within Psest_2586 at 2768.472 kb on + strand, within Psest_2586 at 2768.497 kb on - strand at 2768.528 kb on - strand at 2768.755 kb on - strand at 2768.759 kb on - strand at 2768.802 kb on - strand at 2768.802 kb on - strand at 2768.873 kb on - strand at 2768.891 kb on - strand at 2768.902 kb on - strand at 2768.907 kb on + strand at 2769.033 kb on + strand, within Psest_2587 at 2769.033 kb on + strand, within Psest_2587 at 2769.033 kb on + strand, within Psest_2587 at 2769.033 kb on + strand, within Psest_2587 at 2769.034 kb on - strand, within Psest_2587 at 2769.170 kb on + strand, within Psest_2587 at 2769.170 kb on + strand, within Psest_2587 at 2769.170 kb on + strand, within Psest_2587 at 2769.171 kb on - strand, within Psest_2587 at 2769.171 kb on - strand, within Psest_2587 at 2769.171 kb on - strand, within Psest_2587 at 2769.171 kb on - strand, within Psest_2587 at 2769.171 kb on - strand, within Psest_2587 at 2769.171 kb on - strand, within Psest_2587 at 2769.171 kb on - strand, within Psest_2587 at 2769.171 kb on - strand, within Psest_2587 at 2769.378 kb on - strand, within Psest_2587 at 2769.378 kb on - strand, within Psest_2587 at 2769.378 kb on - strand, within Psest_2587 at 2769.449 kb on - strand, within Psest_2587 at 2769.462 kb on - strand, within Psest_2587 at 2769.462 kb on - strand, within Psest_2587 at 2769.743 kb on + strand, within Psest_2587 at 2769.863 kb on + strand at 2769.864 kb on - strand at 2769.904 kb on + strand at 2769.904 kb on + strand at 2769.905 kb on - strand at 2769.992 kb on + strand at 2769.992 kb on + strand at 2769.993 kb on - strand at 2769.993 kb on - strand at 2769.993 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Def Nalidixic 0.001 mg/ml remove 2,768,023 - Psest_2586 0.73 -1.7 2,768,023 - Psest_2586 0.73 -2.0 2,768,074 - Psest_2586 0.75 -0.3 2,768,074 - Psest_2586 0.75 -0.8 2,768,074 - Psest_2586 0.75 -0.2 2,768,074 - Psest_2586 0.75 +0.8 2,768,074 - Psest_2586 0.75 -1.0 2,768,074 - Psest_2586 0.75 -1.7 2,768,074 - Psest_2586 0.75 -0.7 2,768,074 - Psest_2586 0.75 -0.4 2,768,074 - Psest_2586 0.75 -1.7 2,768,074 - Psest_2586 0.75 -1.8 2,768,074 - Psest_2586 0.75 -1.3 2,768,163 + Psest_2586 0.78 +0.0 2,768,163 + Psest_2586 0.78 -1.7 2,768,163 + Psest_2586 0.78 +0.7 2,768,164 - Psest_2586 0.78 -2.1 2,768,164 - Psest_2586 0.78 -2.3 2,768,164 - Psest_2586 0.78 -0.4 2,768,164 - Psest_2586 0.78 -2.1 2,768,164 - Psest_2586 0.78 +1.0 2,768,164 - Psest_2586 0.78 -1.0 2,768,164 - Psest_2586 0.78 -1.0 2,768,164 - Psest_2586 0.78 -1.6 2,768,164 - Psest_2586 0.78 -1.8 2,768,164 - Psest_2586 0.78 -0.1 2,768,164 - Psest_2586 0.78 -0.7 2,768,164 - Psest_2586 0.78 -1.4 2,768,164 - Psest_2586 0.78 -0.3 2,768,164 - Psest_2586 0.78 -1.5 2,768,164 - Psest_2586 0.78 -0.1 2,768,164 - Psest_2586 0.78 -1.0 2,768,198 - Psest_2586 0.80 -1.5 2,768,198 - Psest_2586 0.80 -1.5 2,768,313 - Psest_2586 0.84 +0.1 2,768,353 + Psest_2586 0.85 -0.0 2,768,379 - Psest_2586 0.86 -1.4 2,768,379 - Psest_2586 0.86 -1.1 2,768,381 - Psest_2586 0.86 -1.3 2,768,412 + Psest_2586 0.87 -1.9 2,768,413 - Psest_2586 0.88 +1.0 2,768,413 - Psest_2586 0.88 -1.2 2,768,472 + Psest_2586 0.90 -0.4 2,768,497 - -0.6 2,768,528 - -1.0 2,768,755 - -2.1 2,768,759 - -0.4 2,768,802 - -0.6 2,768,802 - -0.5 2,768,873 - -0.9 2,768,891 - -1.3 2,768,902 - +0.1 2,768,907 + -1.8 2,769,033 + Psest_2587 0.13 -0.9 2,769,033 + Psest_2587 0.13 +0.1 2,769,033 + Psest_2587 0.13 -0.9 2,769,033 + Psest_2587 0.13 -0.9 2,769,034 - Psest_2587 0.13 -1.0 2,769,170 + Psest_2587 0.27 +0.3 2,769,170 + Psest_2587 0.27 +0.3 2,769,170 + Psest_2587 0.27 -1.6 2,769,171 - Psest_2587 0.27 +0.9 2,769,171 - Psest_2587 0.27 -0.8 2,769,171 - Psest_2587 0.27 -0.2 2,769,171 - Psest_2587 0.27 +1.3 2,769,171 - Psest_2587 0.27 -0.7 2,769,171 - Psest_2587 0.27 +1.3 2,769,171 - Psest_2587 0.27 +0.6 2,769,171 - Psest_2587 0.27 +0.3 2,769,378 - Psest_2587 0.47 -0.2 2,769,378 - Psest_2587 0.47 -0.4 2,769,378 - Psest_2587 0.47 -0.4 2,769,449 - Psest_2587 0.54 -0.7 2,769,462 - Psest_2587 0.56 +1.5 2,769,462 - Psest_2587 0.56 -0.0 2,769,743 + Psest_2587 0.83 -0.1 2,769,863 + -1.2 2,769,864 - -1.3 2,769,904 + -0.1 2,769,904 + -1.2 2,769,905 - +1.0 2,769,992 + -1.2 2,769,992 + -0.2 2,769,993 - +0.1 2,769,993 - -0.4 2,769,993 - -0.6
Or see this region's nucleotide sequence