Experiment: Def Nalidixic 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0199 and Psest_0200 are separated by 281 nucleotides Psest_0200 and Psest_0201 are separated by 120 nucleotides Psest_0201 and Psest_0202 are separated by 131 nucleotides
Psest_0199: Psest_0199 - PAS domain S-box, at 197,027 to 198,613
_0199
Psest_0200: Psest_0200 - hypothetical protein, at 198,895 to 199,059
_0200
Psest_0201: Psest_0201 - PAS domain S-box, at 199,180 to 200,760
_0201
Psest_0202: Psest_0202 - diguanylate cyclase (GGDEF) domain, at 200,892 to 202,823
_0202
Position (kb) 199
200
201 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 198.213 kb on + strand, within Psest_0199 at 198.300 kb on + strand, within Psest_0199 at 198.300 kb on + strand, within Psest_0199 at 198.300 kb on + strand, within Psest_0199 at 198.300 kb on + strand, within Psest_0199 at 198.301 kb on - strand, within Psest_0199 at 198.301 kb on - strand, within Psest_0199 at 198.301 kb on - strand, within Psest_0199 at 198.301 kb on - strand, within Psest_0199 at 198.331 kb on + strand, within Psest_0199 at 198.332 kb on - strand, within Psest_0199 at 198.576 kb on + strand at 198.653 kb on + strand at 198.660 kb on + strand at 198.699 kb on - strand at 198.765 kb on + strand at 198.765 kb on + strand at 198.765 kb on + strand at 198.765 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.769 kb on + strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.770 kb on - strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.801 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.875 kb on + strand at 198.876 kb on - strand at 198.876 kb on - strand at 198.876 kb on - strand at 198.876 kb on - strand at 198.876 kb on - strand at 199.083 kb on + strand at 199.122 kb on - strand at 199.179 kb on + strand at 199.179 kb on + strand at 199.180 kb on - strand at 199.180 kb on - strand at 199.180 kb on - strand at 199.180 kb on - strand at 199.236 kb on + strand at 199.274 kb on - strand at 199.274 kb on - strand at 199.274 kb on - strand at 199.510 kb on + strand, within Psest_0201 at 199.511 kb on - strand, within Psest_0201 at 199.511 kb on - strand, within Psest_0201 at 199.568 kb on - strand, within Psest_0201 at 199.769 kb on + strand, within Psest_0201 at 199.834 kb on + strand, within Psest_0201 at 199.834 kb on + strand, within Psest_0201 at 199.834 kb on + strand, within Psest_0201 at 199.834 kb on + strand, within Psest_0201 at 199.835 kb on - strand, within Psest_0201 at 199.835 kb on - strand, within Psest_0201 at 199.835 kb on - strand, within Psest_0201 at 199.835 kb on - strand, within Psest_0201 at 199.835 kb on - strand, within Psest_0201 at 199.835 kb on - strand, within Psest_0201 at 199.835 kb on - strand, within Psest_0201 at 199.835 kb on - strand, within Psest_0201 at 199.835 kb on - strand, within Psest_0201 at 199.837 kb on - strand, within Psest_0201 at 200.181 kb on + strand, within Psest_0201 at 200.182 kb on - strand, within Psest_0201 at 200.182 kb on - strand, within Psest_0201 at 200.243 kb on + strand, within Psest_0201 at 200.395 kb on - strand, within Psest_0201 at 200.640 kb on + strand at 200.829 kb on + strand at 200.829 kb on + strand at 200.829 kb on + strand at 200.829 kb on + strand at 200.829 kb on + strand at 200.833 kb on + strand at 200.833 kb on + strand at 201.024 kb on + strand at 201.024 kb on + strand at 201.024 kb on + strand at 201.024 kb on + strand at 201.024 kb on + strand at 201.024 kb on + strand at 201.024 kb on + strand at 201.024 kb on + strand at 201.025 kb on - strand at 201.147 kb on + strand, within Psest_0202 at 201.147 kb on + strand, within Psest_0202 at 201.147 kb on + strand, within Psest_0202 at 201.148 kb on - strand, within Psest_0202 at 201.148 kb on - strand, within Psest_0202 at 201.148 kb on - strand, within Psest_0202 at 201.178 kb on - strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.357 kb on + strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.358 kb on - strand, within Psest_0202 at 201.360 kb on - strand, within Psest_0202 at 201.360 kb on - strand, within Psest_0202 at 201.492 kb on + strand, within Psest_0202 at 201.531 kb on + strand, within Psest_0202 at 201.532 kb on - strand, within Psest_0202 at 201.532 kb on - strand, within Psest_0202 at 201.549 kb on + strand, within Psest_0202 at 201.549 kb on + strand, within Psest_0202 at 201.570 kb on + strand, within Psest_0202 at 201.570 kb on + strand, within Psest_0202 at 201.570 kb on + strand, within Psest_0202 at 201.570 kb on + strand, within Psest_0202 at 201.570 kb on + strand, within Psest_0202 at 201.570 kb on + strand, within Psest_0202 at 201.570 kb on + strand, within Psest_0202 at 201.571 kb on - strand, within Psest_0202 at 201.571 kb on - strand, within Psest_0202 at 201.571 kb on - strand, within Psest_0202 at 201.571 kb on - strand, within Psest_0202 at 201.603 kb on + strand, within Psest_0202 at 201.603 kb on + strand, within Psest_0202 at 201.603 kb on + strand, within Psest_0202 at 201.603 kb on + strand, within Psest_0202 at 201.756 kb on + strand, within Psest_0202 at 201.757 kb on - strand, within Psest_0202
Per-strain Table
Position Strand Gene LocusTag Fraction Def Nalidixic 0.001 mg/ml remove 198,213 + Psest_0199 0.75 +0.1 198,300 + Psest_0199 0.80 +1.4 198,300 + Psest_0199 0.80 +1.1 198,300 + Psest_0199 0.80 -3.3 198,300 + Psest_0199 0.80 +0.1 198,301 - Psest_0199 0.80 +0.1 198,301 - Psest_0199 0.80 -0.9 198,301 - Psest_0199 0.80 -0.2 198,301 - Psest_0199 0.80 -0.4 198,331 + Psest_0199 0.82 +0.1 198,332 - Psest_0199 0.82 +0.7 198,576 + -0.4 198,653 + +1.1 198,660 + +0.1 198,699 - -0.6 198,765 + +1.5 198,765 + -0.7 198,765 + +1.0 198,765 + +0.1 198,769 + -2.9 198,769 + +0.1 198,769 + -0.1 198,769 + +0.8 198,769 + -0.2 198,769 + -0.3 198,770 - +0.9 198,770 - -1.4 198,770 - -2.2 198,770 - -0.9 198,770 - -0.5 198,801 + -0.3 198,801 + +0.6 198,801 + -0.9 198,801 + +0.1 198,801 + +0.1 198,801 + -0.1 198,801 + +0.1 198,801 + +1.5 198,801 + +0.1 198,801 + +0.1 198,875 + -0.3 198,875 + +1.1 198,875 + -0.1 198,875 + +0.9 198,875 + +0.1 198,875 + +1.6 198,875 + -0.3 198,876 - -0.5 198,876 - -0.1 198,876 - -1.2 198,876 - +1.3 198,876 - -1.1 199,083 + +0.1 199,122 - +1.6 199,179 + +0.9 199,179 + -0.9 199,180 - -0.6 199,180 - +1.7 199,180 - -0.9 199,180 - -0.2 199,236 + -1.4 199,274 - +1.1 199,274 - +1.1 199,274 - -0.3 199,510 + Psest_0201 0.21 +1.7 199,511 - Psest_0201 0.21 +0.1 199,511 - Psest_0201 0.21 +0.1 199,568 - Psest_0201 0.25 +1.5 199,769 + Psest_0201 0.37 -0.7 199,834 + Psest_0201 0.41 +0.6 199,834 + Psest_0201 0.41 +0.7 199,834 + Psest_0201 0.41 +0.9 199,834 + Psest_0201 0.41 -0.3 199,835 - Psest_0201 0.41 +0.9 199,835 - Psest_0201 0.41 +0.1 199,835 - Psest_0201 0.41 +1.7 199,835 - Psest_0201 0.41 -0.2 199,835 - Psest_0201 0.41 +0.1 199,835 - Psest_0201 0.41 -0.2 199,835 - Psest_0201 0.41 -0.9 199,835 - Psest_0201 0.41 +1.5 199,835 - Psest_0201 0.41 +0.7 199,837 - Psest_0201 0.42 +0.1 200,181 + Psest_0201 0.63 +2.1 200,182 - Psest_0201 0.63 -1.9 200,182 - Psest_0201 0.63 +2.1 200,243 + Psest_0201 0.67 +1.6 200,395 - Psest_0201 0.77 +0.9 200,640 + +1.3 200,829 + +0.3 200,829 + +0.1 200,829 + +0.0 200,829 + +1.4 200,829 + +1.1 200,833 + +1.1 200,833 + -0.3 201,024 + -0.4 201,024 + +1.4 201,024 + -1.2 201,024 + -0.2 201,024 + -0.4 201,024 + +2.5 201,024 + -0.3 201,024 + -0.2 201,025 - -0.9 201,147 + Psest_0202 0.13 -0.4 201,147 + Psest_0202 0.13 +1.0 201,147 + Psest_0202 0.13 -0.9 201,148 - Psest_0202 0.13 -1.1 201,148 - Psest_0202 0.13 +2.9 201,148 - Psest_0202 0.13 -1.9 201,178 - Psest_0202 0.15 +1.1 201,357 + Psest_0202 0.24 +0.8 201,357 + Psest_0202 0.24 -0.3 201,357 + Psest_0202 0.24 +1.4 201,357 + Psest_0202 0.24 -1.4 201,357 + Psest_0202 0.24 +1.1 201,357 + Psest_0202 0.24 -2.2 201,357 + Psest_0202 0.24 -0.8 201,357 + Psest_0202 0.24 -0.5 201,357 + Psest_0202 0.24 +0.9 201,358 - Psest_0202 0.24 -0.9 201,358 - Psest_0202 0.24 +0.1 201,358 - Psest_0202 0.24 +0.1 201,358 - Psest_0202 0.24 +0.1 201,358 - Psest_0202 0.24 +0.4 201,358 - Psest_0202 0.24 +1.4 201,358 - Psest_0202 0.24 -0.9 201,358 - Psest_0202 0.24 -1.2 201,358 - Psest_0202 0.24 -2.2 201,358 - Psest_0202 0.24 -0.4 201,358 - Psest_0202 0.24 -0.9 201,358 - Psest_0202 0.24 +0.1 201,358 - Psest_0202 0.24 +0.7 201,358 - Psest_0202 0.24 +0.4 201,358 - Psest_0202 0.24 -0.6 201,358 - Psest_0202 0.24 -0.3 201,358 - Psest_0202 0.24 +0.5 201,358 - Psest_0202 0.24 +1.1 201,360 - Psest_0202 0.24 -0.9 201,360 - Psest_0202 0.24 +0.4 201,492 + Psest_0202 0.31 -0.9 201,531 + Psest_0202 0.33 -0.4 201,532 - Psest_0202 0.33 -0.9 201,532 - Psest_0202 0.33 +0.1 201,549 + Psest_0202 0.34 -0.3 201,549 + Psest_0202 0.34 +0.1 201,570 + Psest_0202 0.35 +0.6 201,570 + Psest_0202 0.35 -0.6 201,570 + Psest_0202 0.35 +0.1 201,570 + Psest_0202 0.35 +0.1 201,570 + Psest_0202 0.35 +0.1 201,570 + Psest_0202 0.35 -0.3 201,570 + Psest_0202 0.35 +0.1 201,571 - Psest_0202 0.35 +1.7 201,571 - Psest_0202 0.35 -0.5 201,571 - Psest_0202 0.35 -0.9 201,571 - Psest_0202 0.35 +0.1 201,603 + Psest_0202 0.37 -0.5 201,603 + Psest_0202 0.37 -0.2 201,603 + Psest_0202 0.37 -1.1 201,603 + Psest_0202 0.37 -0.7 201,756 + Psest_0202 0.45 +1.7 201,757 - Psest_0202 0.45 -0.1
Or see this region's nucleotide sequence