Experiment: Def Nalidixic 0.0005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_4324 and Psest_4325 are separated by 288 nucleotides Psest_4325 and Psest_4326 are separated by 232 nucleotides
Psest_4324: Psest_4324 - DNA repair photolyase, at 4,524,103 to 4,525,167
_4324
Psest_4325: Psest_4325 - hypothetical protein, at 4,525,456 to 4,525,830
_4325
Psest_4326: Psest_4326 - cytochrome c oxidase, subunit II, at 4,526,063 to 4,527,196
_4326
Position (kb)
4525
4526 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4524.505 kb on + strand, within Psest_4324 at 4524.505 kb on + strand, within Psest_4324 at 4524.744 kb on - strand, within Psest_4324 at 4524.874 kb on + strand, within Psest_4324 at 4525.111 kb on + strand at 4525.112 kb on - strand at 4525.154 kb on + strand at 4525.154 kb on + strand at 4525.154 kb on + strand at 4525.155 kb on - strand at 4525.155 kb on - strand at 4525.155 kb on - strand at 4525.191 kb on + strand at 4525.191 kb on + strand at 4525.191 kb on + strand at 4525.191 kb on + strand at 4525.192 kb on - strand at 4525.192 kb on - strand at 4525.192 kb on - strand at 4525.192 kb on - strand at 4525.192 kb on - strand at 4525.192 kb on - strand at 4525.314 kb on + strand at 4525.314 kb on + strand at 4525.387 kb on + strand at 4525.516 kb on + strand, within Psest_4325 at 4525.517 kb on - strand, within Psest_4325 at 4525.517 kb on - strand, within Psest_4325 at 4525.737 kb on + strand, within Psest_4325 at 4525.828 kb on + strand at 4525.828 kb on + strand at 4525.854 kb on + strand at 4525.854 kb on + strand at 4525.854 kb on + strand at 4525.855 kb on - strand at 4525.855 kb on - strand at 4525.855 kb on - strand at 4525.855 kb on - strand at 4525.856 kb on + strand at 4525.857 kb on - strand at 4525.857 kb on - strand at 4525.857 kb on - strand at 4525.868 kb on + strand at 4525.874 kb on + strand at 4525.874 kb on + strand at 4525.875 kb on - strand at 4525.968 kb on + strand at 4525.968 kb on + strand at 4525.968 kb on + strand at 4525.969 kb on - strand at 4526.048 kb on + strand at 4526.109 kb on + strand at 4526.110 kb on - strand at 4526.110 kb on - strand at 4526.110 kb on - strand at 4526.249 kb on + strand, within Psest_4326 at 4526.250 kb on - strand, within Psest_4326 at 4526.250 kb on - strand, within Psest_4326 at 4526.250 kb on - strand, within Psest_4326 at 4526.250 kb on - strand, within Psest_4326 at 4526.250 kb on - strand, within Psest_4326 at 4526.396 kb on + strand, within Psest_4326 at 4526.396 kb on + strand, within Psest_4326 at 4526.396 kb on + strand, within Psest_4326 at 4526.396 kb on + strand, within Psest_4326 at 4526.396 kb on + strand, within Psest_4326 at 4526.396 kb on + strand, within Psest_4326 at 4526.397 kb on - strand, within Psest_4326 at 4526.397 kb on - strand, within Psest_4326 at 4526.397 kb on - strand, within Psest_4326 at 4526.397 kb on - strand, within Psest_4326 at 4526.397 kb on - strand, within Psest_4326 at 4526.397 kb on - strand, within Psest_4326 at 4526.456 kb on + strand, within Psest_4326 at 4526.456 kb on + strand, within Psest_4326 at 4526.457 kb on - strand, within Psest_4326 at 4526.457 kb on - strand, within Psest_4326 at 4526.457 kb on - strand, within Psest_4326 at 4526.457 kb on - strand, within Psest_4326 at 4526.462 kb on + strand, within Psest_4326 at 4526.462 kb on + strand, within Psest_4326 at 4526.462 kb on + strand, within Psest_4326 at 4526.462 kb on + strand, within Psest_4326 at 4526.463 kb on - strand, within Psest_4326 at 4526.463 kb on - strand, within Psest_4326 at 4526.463 kb on - strand, within Psest_4326 at 4526.463 kb on - strand, within Psest_4326 at 4526.463 kb on - strand, within Psest_4326 at 4526.463 kb on - strand, within Psest_4326 at 4526.463 kb on - strand, within Psest_4326 at 4526.463 kb on - strand, within Psest_4326 at 4526.463 kb on - strand, within Psest_4326 at 4526.546 kb on + strand, within Psest_4326 at 4526.547 kb on - strand, within Psest_4326 at 4526.547 kb on - strand, within Psest_4326 at 4526.547 kb on - strand, within Psest_4326 at 4526.720 kb on + strand, within Psest_4326 at 4526.721 kb on - strand, within Psest_4326 at 4526.801 kb on + strand, within Psest_4326 at 4526.802 kb on - strand, within Psest_4326
Per-strain Table
Position Strand Gene LocusTag Fraction Def Nalidixic 0.0005 mg/ml remove 4,524,505 + Psest_4324 0.38 +0.6 4,524,505 + Psest_4324 0.38 -0.3 4,524,744 - Psest_4324 0.60 +0.5 4,524,874 + Psest_4324 0.72 -1.2 4,525,111 + +1.4 4,525,112 - +0.2 4,525,154 + -0.1 4,525,154 + +1.0 4,525,154 + +0.7 4,525,155 - -0.8 4,525,155 - -0.1 4,525,155 - +0.0 4,525,191 + -0.5 4,525,191 + -0.9 4,525,191 + +0.1 4,525,191 + +2.1 4,525,192 - -0.3 4,525,192 - -0.3 4,525,192 - -0.2 4,525,192 - +0.3 4,525,192 - -0.3 4,525,192 - +0.2 4,525,314 + +0.1 4,525,314 + +0.3 4,525,387 + +0.6 4,525,516 + Psest_4325 0.16 -0.5 4,525,517 - Psest_4325 0.16 -0.4 4,525,517 - Psest_4325 0.16 -0.8 4,525,737 + Psest_4325 0.75 -0.8 4,525,828 + -0.1 4,525,828 + -0.3 4,525,854 + +0.4 4,525,854 + +0.1 4,525,854 + -0.6 4,525,855 - +0.0 4,525,855 - +0.2 4,525,855 - -0.9 4,525,855 - -1.2 4,525,856 + -2.9 4,525,857 - -0.8 4,525,857 - -1.0 4,525,857 - +0.1 4,525,868 + +0.3 4,525,874 + -0.5 4,525,874 + +0.2 4,525,875 - +0.6 4,525,968 + +0.2 4,525,968 + -0.6 4,525,968 + +1.2 4,525,969 - -0.0 4,526,048 + +0.3 4,526,109 + -1.2 4,526,110 - +0.1 4,526,110 - +0.3 4,526,110 - -1.3 4,526,249 + Psest_4326 0.16 -0.7 4,526,250 - Psest_4326 0.16 -0.7 4,526,250 - Psest_4326 0.16 -0.6 4,526,250 - Psest_4326 0.16 -0.8 4,526,250 - Psest_4326 0.16 +0.1 4,526,250 - Psest_4326 0.16 +2.4 4,526,396 + Psest_4326 0.29 -0.4 4,526,396 + Psest_4326 0.29 +0.0 4,526,396 + Psest_4326 0.29 -0.7 4,526,396 + Psest_4326 0.29 -0.1 4,526,396 + Psest_4326 0.29 -1.0 4,526,396 + Psest_4326 0.29 +0.1 4,526,397 - Psest_4326 0.29 -0.7 4,526,397 - Psest_4326 0.29 -0.3 4,526,397 - Psest_4326 0.29 -0.2 4,526,397 - Psest_4326 0.29 -0.1 4,526,397 - Psest_4326 0.29 -0.6 4,526,397 - Psest_4326 0.29 +0.1 4,526,456 + Psest_4326 0.35 +0.1 4,526,456 + Psest_4326 0.35 +0.3 4,526,457 - Psest_4326 0.35 -0.1 4,526,457 - Psest_4326 0.35 -0.3 4,526,457 - Psest_4326 0.35 -1.0 4,526,457 - Psest_4326 0.35 -0.0 4,526,462 + Psest_4326 0.35 -0.8 4,526,462 + Psest_4326 0.35 -0.0 4,526,462 + Psest_4326 0.35 -2.0 4,526,462 + Psest_4326 0.35 -0.5 4,526,463 - Psest_4326 0.35 -0.5 4,526,463 - Psest_4326 0.35 +0.8 4,526,463 - Psest_4326 0.35 +0.4 4,526,463 - Psest_4326 0.35 -0.3 4,526,463 - Psest_4326 0.35 +1.2 4,526,463 - Psest_4326 0.35 +0.2 4,526,463 - Psest_4326 0.35 -0.5 4,526,463 - Psest_4326 0.35 -1.4 4,526,463 - Psest_4326 0.35 -0.6 4,526,546 + Psest_4326 0.43 +0.3 4,526,547 - Psest_4326 0.43 +1.2 4,526,547 - Psest_4326 0.43 -0.6 4,526,547 - Psest_4326 0.43 +0.1 4,526,720 + Psest_4326 0.58 -0.3 4,526,721 - Psest_4326 0.58 +0.3 4,526,801 + Psest_4326 0.65 -0.1 4,526,802 - Psest_4326 0.65 +0.3
Or see this region's nucleotide sequence